Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38279 * 119.92592 * 2 1 4 4 C 1.38106 * 120.07517 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.03649 * 180.02562 * 4 3 2 6 6 C 1.38910 * 119.92655 * 359.97438 * 4 3 2 7 7 N 1.39671 * 120.07682 * 179.97438 * 6 4 3 8 8 C 1.48528 * 111.00096 * 178.78524 * 7 6 4 9 9 C 1.54937 * 103.22739 * 200.28393 * 8 7 6 10 10 C 1.54590 * 102.92366 * 37.41046 * 9 8 7 11 11 H 1.09000 * 110.38951 * 97.00776 * 10 9 8 12 12 C 1.50708 * 110.31265 * 219.12961 * 10 9 8 13 13 H 1.07999 * 120.00074 * 110.26785 * 12 10 9 14 14 C 1.37885 * 119.99709 * 290.27351 * 12 10 9 15 15 N 1.31516 * 120.00039 * 2.35874 * 14 12 10 16 16 Si 1.86798 * 119.99593 * 182.35428 * 14 12 10 17 17 H 1.48503 * 109.47146 * 265.02060 * 16 14 12 18 18 H 1.48506 * 109.46918 * 145.02388 * 16 14 12 19 19 H 1.48499 * 109.47329 * 25.02470 * 16 14 12 20 20 C 1.47907 * 110.99853 * 61.38787 * 7 6 4 21 21 C 1.38908 * 119.84792 * 0.25552 * 6 4 3 22 22 C 1.50705 * 120.03639 * 179.72621 * 21 6 4 23 23 C 1.38106 * 119.92702 * 359.48989 * 21 6 4 24 24 H 1.09003 * 109.47005 * 90.00190 * 1 2 3 25 25 H 1.08999 * 109.47269 * 209.99808 * 1 2 3 26 26 H 1.08995 * 109.46944 * 330.00183 * 1 2 3 27 27 H 1.08000 * 119.96222 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47214 * 262.13659 * 5 4 3 29 29 H 1.09006 * 109.47216 * 22.14093 * 5 4 3 30 30 H 1.08997 * 109.47192 * 142.13929 * 5 4 3 31 31 H 1.09005 * 110.66732 * 318.71360 * 8 7 6 32 32 H 1.08994 * 110.67089 * 81.84259 * 8 7 6 33 33 H 1.09007 * 110.71991 * 279.05388 * 9 8 7 34 34 H 1.08992 * 110.72760 * 155.77643 * 9 8 7 35 35 H 0.96996 * 119.99722 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.91658 * 26.49153 * 20 7 6 37 37 H 1.08998 * 109.91505 * 265.19668 * 20 7 6 38 38 H 1.08995 * 109.47293 * 78.62849 * 22 21 6 39 39 H 1.08999 * 109.46872 * 198.62733 * 22 21 6 40 40 H 1.08996 * 109.46772 * 318.62503 * 22 21 6 41 41 H 1.08002 * 119.96605 * 180.25189 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.3288 2.5086 0.0011 6 6 4.2741 -0.0001 0.0016 7 7 5.6708 -0.0001 0.0016 8 6 6.2030 -1.3864 0.0323 9 6 7.6509 -1.1988 0.5511 10 6 7.5000 -0.0702 1.5967 11 1 7.4160 -0.4899 2.5991 12 6 8.6734 0.8725 1.5219 13 1 8.5371 1.8757 1.1458 14 6 9.9211 0.4542 1.9336 15 7 10.0967 -0.7816 2.3479 16 14 11.3618 1.6427 1.9028 17 1 12.1144 1.4755 0.6336 18 1 12.2600 1.3616 3.0516 19 1 10.8565 3.0358 1.9989 20 6 6.2008 0.6623 1.2132 21 6 3.5779 -1.2021 -0.0032 22 6 4.3289 -2.5087 -0.0083 23 6 2.1969 -1.1985 0.0016 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6550 2.1327 0.0004 28 1 4.6322 2.7538 -1.0167 29 1 3.6844 3.2979 0.3884 30 1 5.2131 2.4192 0.6321 31 1 5.6254 -2.0052 0.7190 32 1 6.2058 -1.8196 -0.9679 33 1 8.3133 -0.8896 -0.2575 34 1 8.0140 -2.1132 1.0202 35 1 10.9744 -1.0757 2.6379 36 1 5.4775 0.5851 2.0251 37 1 6.4140 1.7098 1.0006 38 1 4.6855 -2.7268 0.9983 39 1 3.6656 -3.3076 -0.3398 40 1 5.1786 -2.4367 -0.6872 41 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084506684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = 102.188074 kcal Electronic energy + Delta-G solvation = -19841.827697 eV Core-core repulsion = 17110.467327 eV Total energy + Delta-G solvation = -2731.360369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.65490 -37.55837 -34.24059 -33.71776 -32.04943 -29.91882 -29.26348 -27.66560 -26.07858 -25.57834 -24.00734 -20.84847 -20.41444 -20.24471 -19.42322 -16.72409 -16.30476 -15.42739 -15.08285 -14.62514 -14.31290 -13.72689 -13.61757 -13.42164 -13.02869 -12.94127 -12.67097 -12.47204 -12.20892 -12.01321 -11.98578 -11.68203 -11.41016 -11.06199 -10.95487 -10.76073 -10.59882 -10.54658 -10.20931 -9.76182 -9.53217 -9.23664 -8.78425 -8.64369 -8.32497 -8.24514 -7.08365 -6.04147 -4.06011 1.64633 1.68367 3.29937 3.37157 3.40626 3.92284 4.42911 4.56337 4.97816 5.02091 5.12733 5.27383 5.39037 5.45314 5.53223 5.58598 5.63450 5.69676 5.81223 5.84251 5.93608 5.94530 6.01427 6.15766 6.19908 6.22593 6.26599 6.26919 6.44629 6.52196 6.74327 6.78039 6.87328 6.91635 7.06740 7.10551 7.22266 7.43124 7.58616 7.83824 7.95136 7.97205 8.39686 8.95416 9.57546 11.05983 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.005276 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.284688 B = 5305.347353 C = 5918.346915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.099 4.099 5 C -0.125 4.125 6 C 0.114 3.886 7 N -0.469 5.469 8 C -0.027 4.027 9 C -0.103 4.103 10 C 0.041 3.959 11 H 0.036 0.964 12 C -0.509 4.509 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.046 3.954 21 C -0.126 4.126 22 C -0.154 4.154 23 C -0.105 4.105 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.260 0.740 36 H 0.028 0.972 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.120 0.880 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 -0.546 -4.120 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.101 4.101 5 C -0.181 4.181 6 C 0.015 3.985 7 N -0.184 5.184 8 C -0.151 4.151 9 C -0.142 4.142 10 C 0.022 3.978 11 H 0.054 0.946 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.208 4.208 23 C -0.123 4.123 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.137 0.863 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.297 -0.374 -4.495 14.992 hybrid contribution 0.528 0.259 0.512 0.780 sum -13.769 -0.115 -3.983 14.334 Atomic orbital electron populations 1.20665 0.91791 1.02074 1.01601 1.19665 0.95487 0.93121 1.03976 1.20694 0.93043 0.97132 1.01610 1.19546 0.93220 0.94416 1.02945 1.21116 1.00994 0.92962 1.03041 1.19112 0.89914 0.92251 0.97268 1.61777 1.02864 1.15976 1.37755 1.25771 0.99145 0.89848 1.00376 1.22626 0.92234 0.99905 0.99387 1.19526 0.90448 0.92956 0.94901 0.94577 1.21161 0.92705 0.98443 1.42411 0.92444 1.24972 0.98762 0.95106 0.95109 1.69962 1.23079 1.15897 1.43930 0.86601 0.82505 0.81498 0.77543 1.20781 1.21274 1.19843 1.23326 0.97272 0.99998 0.87207 1.19963 0.93959 0.94484 1.04532 1.22476 1.01987 0.93368 1.02967 1.20668 0.93008 0.97097 1.01572 0.91907 0.92137 0.92095 0.86603 0.91527 0.92749 0.89212 0.87870 0.90350 0.92215 0.92038 0.93062 0.95317 0.89743 0.90622 0.93857 0.86297 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.12 -1.66 5.88 -104.59 -0.62 -2.28 16 3 C -0.11 -1.54 9.32 -39.61 -0.37 -1.91 16 4 C -0.10 -1.63 5.76 -104.42 -0.60 -2.24 16 5 C -0.13 -1.92 9.62 36.01 0.35 -1.58 16 6 C 0.11 2.03 5.32 -83.79 -0.45 1.58 16 7 N -0.47 -9.16 5.04 -199.73 -1.01 -10.17 16 8 C -0.03 -0.51 4.36 -1.90 -0.01 -0.52 16 9 C -0.10 -2.32 6.04 -24.87 -0.15 -2.47 16 10 C 0.04 0.99 2.79 -90.42 -0.25 0.74 16 11 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.51 -13.70 8.31 -34.43 -0.29 -13.99 16 13 H 0.06 1.54 7.36 -52.49 -0.39 1.15 16 14 C 0.06 1.70 5.39 -17.82 -0.10 1.60 16 15 N -0.89 -25.19 12.86 55.43 0.71 -24.48 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 C 0.05 0.96 4.79 -2.75 -0.01 0.95 16 21 C -0.13 -2.04 5.84 -104.42 -0.61 -2.65 16 22 C -0.15 -2.17 7.86 36.01 0.28 -1.89 16 23 C -0.10 -1.51 9.31 -39.61 -0.37 -1.87 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.12 1.42 8.05 -52.49 -0.42 0.99 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.71 8.03 -51.93 -0.42 0.29 16 30 H 0.09 1.52 3.94 -51.93 -0.20 1.32 16 31 H 0.10 1.78 3.20 -107.14 -0.34 1.44 16 32 H 0.08 1.34 6.26 -51.93 -0.33 1.01 16 33 H 0.06 1.46 7.86 -51.92 -0.41 1.05 16 34 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.03 0.59 7.76 -51.93 -0.40 0.19 16 37 H 0.08 1.79 5.02 -51.93 -0.26 1.53 16 38 H 0.08 1.09 6.40 -51.93 -0.33 0.75 16 39 H 0.04 0.52 7.99 -51.93 -0.41 0.11 16 40 H 0.12 1.72 3.60 -92.03 -0.33 1.39 16 41 H 0.11 1.39 8.03 -52.49 -0.42 0.97 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -28.47 309.87 -9.80 -38.28 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.33 Total: 2.81 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -2.83 Total: -27.20 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.29 Total: -34.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.47 -9.80 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084506684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.466 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds