Wall clock time and date at job start Mon Mar 30 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38279 * 119.92592 * 2 1 4 4 C 1.38106 * 120.07517 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.03649 * 180.02562 * 4 3 2 6 6 C 1.38910 * 119.92655 * 359.97438 * 4 3 2 7 7 N 1.39671 * 120.07682 * 179.97438 * 6 4 3 8 8 C 1.48528 * 111.00096 * 178.78524 * 7 6 4 9 9 C 1.54937 * 103.22739 * 200.28393 * 8 7 6 10 10 C 1.54590 * 102.92366 * 37.41046 * 9 8 7 11 11 H 1.09000 * 110.38951 * 97.00776 * 10 9 8 12 12 C 1.50708 * 110.31265 * 219.12961 * 10 9 8 13 13 H 1.07999 * 120.00074 * 110.26785 * 12 10 9 14 14 C 1.37885 * 119.99709 * 290.27351 * 12 10 9 15 15 N 1.31516 * 120.00039 * 2.35874 * 14 12 10 16 16 Si 1.86798 * 119.99593 * 182.35428 * 14 12 10 17 17 H 1.48503 * 109.47146 * 265.02060 * 16 14 12 18 18 H 1.48506 * 109.46918 * 145.02388 * 16 14 12 19 19 H 1.48499 * 109.47329 * 25.02470 * 16 14 12 20 20 C 1.47907 * 110.99853 * 61.38787 * 7 6 4 21 21 C 1.38908 * 119.84792 * 0.25552 * 6 4 3 22 22 C 1.50705 * 120.03639 * 179.72621 * 21 6 4 23 23 C 1.38106 * 119.92702 * 359.48989 * 21 6 4 24 24 H 1.09003 * 109.47005 * 90.00190 * 1 2 3 25 25 H 1.08999 * 109.47269 * 209.99808 * 1 2 3 26 26 H 1.08995 * 109.46944 * 330.00183 * 1 2 3 27 27 H 1.08000 * 119.96222 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47214 * 262.13659 * 5 4 3 29 29 H 1.09006 * 109.47216 * 22.14093 * 5 4 3 30 30 H 1.08997 * 109.47192 * 142.13929 * 5 4 3 31 31 H 1.09005 * 110.66732 * 318.71360 * 8 7 6 32 32 H 1.08994 * 110.67089 * 81.84259 * 8 7 6 33 33 H 1.09007 * 110.71991 * 279.05388 * 9 8 7 34 34 H 1.08992 * 110.72760 * 155.77643 * 9 8 7 35 35 H 0.96996 * 119.99722 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.91658 * 26.49153 * 20 7 6 37 37 H 1.08998 * 109.91505 * 265.19668 * 20 7 6 38 38 H 1.08995 * 109.47293 * 78.62849 * 22 21 6 39 39 H 1.08999 * 109.46872 * 198.62733 * 22 21 6 40 40 H 1.08996 * 109.46772 * 318.62503 * 22 21 6 41 41 H 1.08002 * 119.96605 * 180.25189 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.3288 2.5086 0.0011 6 6 4.2741 -0.0001 0.0016 7 7 5.6708 -0.0001 0.0016 8 6 6.2030 -1.3864 0.0323 9 6 7.6509 -1.1988 0.5511 10 6 7.5000 -0.0702 1.5967 11 1 7.4160 -0.4899 2.5991 12 6 8.6734 0.8725 1.5219 13 1 8.5371 1.8757 1.1458 14 6 9.9211 0.4542 1.9336 15 7 10.0967 -0.7816 2.3479 16 14 11.3618 1.6427 1.9028 17 1 12.1144 1.4755 0.6336 18 1 12.2600 1.3616 3.0516 19 1 10.8565 3.0358 1.9989 20 6 6.2008 0.6623 1.2132 21 6 3.5779 -1.2021 -0.0032 22 6 4.3289 -2.5087 -0.0083 23 6 2.1969 -1.1985 0.0016 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6550 2.1327 0.0004 28 1 4.6322 2.7538 -1.0167 29 1 3.6844 3.2979 0.3884 30 1 5.2131 2.4192 0.6321 31 1 5.6254 -2.0052 0.7190 32 1 6.2058 -1.8196 -0.9679 33 1 8.3133 -0.8896 -0.2575 34 1 8.0140 -2.1132 1.0202 35 1 10.9744 -1.0757 2.6379 36 1 5.4775 0.5851 2.0251 37 1 6.4140 1.7098 1.0006 38 1 4.6855 -2.7268 0.9983 39 1 3.6656 -3.3076 -0.3398 40 1 5.1786 -2.4367 -0.6872 41 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084506684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:39 Heat of formation + Delta-G solvation = 87.071661 kcal Electronic energy + Delta-G solvation = -19842.483193 eV Core-core repulsion = 17110.467327 eV Total energy + Delta-G solvation = -2732.015866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.98701 -38.91626 -35.72474 -35.14216 -33.68135 -31.38712 -30.71614 -28.89039 -27.54382 -26.95376 -25.69388 -22.16989 -21.79975 -21.55433 -21.06833 -18.69198 -17.64521 -16.90364 -16.52885 -16.33408 -15.52216 -15.13882 -14.87327 -14.74931 -14.36890 -14.08291 -14.03282 -13.85931 -13.67325 -13.40120 -13.21272 -13.17266 -12.85020 -12.60926 -12.53829 -12.39144 -12.14436 -11.87033 -11.73907 -11.48626 -11.21945 -10.95355 -10.62259 -10.44047 -9.89746 -9.40621 -8.42465 -8.14116 -6.22423 0.47841 0.50866 1.40630 1.41769 1.52286 2.42860 2.74036 3.14684 3.19219 3.86789 3.94436 4.02744 4.07622 4.13300 4.34207 4.40865 4.47075 4.56924 4.57297 4.70689 4.72568 4.75066 4.80355 4.84073 4.90014 4.95852 4.97298 5.08533 5.14710 5.20572 5.26226 5.33527 5.39481 5.50104 5.59582 5.65595 5.75303 5.79067 5.84720 6.04114 6.17352 6.34586 6.58466 6.85058 7.43927 8.95505 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.005276 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.284688 B = 5305.347353 C = 5918.346915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.115 4.115 3 C -0.113 4.113 4 C -0.113 4.113 5 C -0.122 4.122 6 C 0.076 3.924 7 N -0.477 5.477 8 C -0.016 4.016 9 C -0.095 4.095 10 C 0.033 3.967 11 H 0.005 0.995 12 C -0.525 4.525 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.062 3.938 21 C -0.136 4.136 22 C -0.152 4.152 23 C -0.112 4.112 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.261 0.739 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 -0.378 -4.829 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.178 4.178 6 C -0.022 4.022 7 N -0.193 5.193 8 C -0.140 4.140 9 C -0.134 4.134 10 C 0.014 3.986 11 H 0.023 0.977 12 C -0.564 4.564 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.779 3.221 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.062 4.062 21 C -0.138 4.138 22 C -0.207 4.207 23 C -0.130 4.130 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.116 0.884 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.692 -0.201 -5.214 17.489 hybrid contribution 1.114 0.192 0.736 1.349 sum -15.578 -0.009 -4.478 16.209 Atomic orbital electron populations 1.20738 0.88992 1.03400 1.02864 1.20153 0.97544 0.92513 1.01350 1.21007 0.92279 0.98722 1.01126 1.19803 0.94369 0.94233 1.03088 1.21061 1.00579 0.93617 1.02564 1.19280 0.88911 0.93774 1.00235 1.61799 1.04615 1.16029 1.36841 1.25953 0.96018 0.90252 1.01746 1.22407 0.94738 0.98348 0.97934 1.19483 0.91711 0.93587 0.93843 0.97693 1.21484 0.93906 0.98697 1.42277 0.92872 1.25724 1.01287 0.96650 0.94857 1.70076 1.23636 1.17409 1.44744 0.85610 0.79274 0.79625 0.77574 1.20387 1.20826 1.19163 1.23012 0.95539 0.99470 0.88226 1.20236 0.95023 0.94417 1.04171 1.22347 1.02278 0.93489 1.02546 1.21016 0.92411 0.98618 1.00959 0.90515 0.90829 0.90876 0.84282 0.91720 0.90450 0.91309 0.86132 0.88430 0.94775 0.93545 0.93038 0.95540 0.90255 0.90939 0.91185 0.86873 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.01 71.24 0.71 -0.94 16 2 C -0.11 -2.74 5.88 -19.84 -0.12 -2.86 16 3 C -0.11 -2.97 9.32 22.25 0.21 -2.76 16 4 C -0.11 -3.60 5.76 -19.73 -0.11 -3.71 16 5 C -0.12 -3.69 9.62 71.24 0.69 -3.01 16 6 C 0.08 2.66 5.32 38.21 0.20 2.86 16 7 N -0.48 -18.84 5.04 -785.82 -3.96 -22.80 16 8 C -0.02 -0.60 4.36 86.65 0.38 -0.22 16 9 C -0.10 -4.50 6.04 31.80 0.19 -4.30 16 10 C 0.03 1.68 2.79 -10.66 -0.03 1.65 16 11 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 12 C -0.53 -29.32 8.31 25.60 0.21 -29.11 16 13 H 0.05 2.93 7.36 -2.91 -0.02 2.91 16 14 C 0.01 0.76 5.39 84.66 0.46 1.22 16 15 N -0.92 -53.62 12.86 21.45 0.28 -53.34 16 16 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 C 0.06 2.71 4.79 86.44 0.41 3.12 16 21 C -0.14 -4.12 5.84 -19.73 -0.12 -4.23 16 22 C -0.15 -4.01 7.86 71.24 0.56 -3.45 16 23 C -0.11 -2.86 9.31 22.25 0.21 -2.65 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 26 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 27 H 0.14 2.92 8.05 -2.91 -0.02 2.90 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.90 8.03 -2.38 -0.02 1.88 16 30 H 0.07 2.37 3.94 -2.39 -0.01 2.36 16 31 H 0.12 4.13 3.20 -54.24 -0.17 3.95 16 32 H 0.10 3.27 6.26 -2.39 -0.01 3.26 16 33 H 0.03 1.73 7.86 -2.38 -0.02 1.71 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.03 1.13 7.76 -2.39 -0.02 1.11 16 37 H 0.08 3.51 5.02 -2.39 -0.01 3.50 16 38 H 0.07 1.98 6.40 -2.39 -0.02 1.97 16 39 H 0.07 1.48 7.99 -2.39 -0.02 1.46 16 40 H 0.11 3.10 3.60 -40.06 -0.14 2.96 16 41 H 0.14 2.81 8.03 -2.91 -0.02 2.78 16 Total: -1.00 -62.70 309.87 2.92 -59.79 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.72 Total: 18.66 kcal Atomic # 6 Polarization: -52.25 SS G_CDS: 3.85 Total: -48.40 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -3.68 Total: -76.15 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.70 2.92 -59.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084506684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.858 kcal (2) G-P(sol) polarization free energy of solvation -62.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds