Wall clock time and date at job start Mon Mar 30 2020 07:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46904 * 2 1 4 4 C 1.50700 * 109.47309 * 120.00329 * 2 1 3 5 5 C 1.38311 * 119.91375 * 300.01825 * 4 2 1 6 6 C 1.38026 * 119.90285 * 180.09158 * 5 4 2 7 7 C 1.39071 * 120.03849 * 359.93635 * 6 5 4 8 8 C 1.38606 * 120.02078 * 359.92033 * 7 6 5 9 9 C 1.38121 * 119.92102 * 120.00015 * 4 2 1 10 10 C 1.50602 * 121.50840 * 180.21056 * 8 7 6 11 11 C 1.52856 * 110.48657 * 339.49816 * 10 8 7 12 12 H 1.08999 * 109.57598 * 291.50397 * 11 10 8 13 13 C 1.53004 * 109.57066 * 171.24630 * 11 10 8 14 14 C 1.50708 * 109.46767 * 174.99640 * 13 11 10 15 15 H 1.08000 * 119.99981 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99776 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47050 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46924 * 119.99883 * 18 16 14 21 21 H 1.48496 * 109.46995 * 240.00189 * 18 16 14 22 22 C 1.53433 * 108.83963 * 51.31617 * 11 10 8 23 23 N 1.39923 * 119.13807 * 179.88048 * 7 6 5 24 24 H 1.08995 * 109.46929 * 299.99625 * 1 2 3 25 25 H 1.08997 * 109.47506 * 59.99957 * 1 2 3 26 26 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46996 * 240.00118 * 2 1 3 28 28 H 1.09000 * 109.47460 * 299.99969 * 3 2 1 29 29 H 1.09004 * 109.47198 * 60.00241 * 3 2 1 30 30 H 1.09002 * 109.47123 * 180.02562 * 3 2 1 31 31 H 1.07993 * 120.05216 * 0.09735 * 5 4 2 32 32 H 1.08010 * 119.98183 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.84341 * 359.97438 * 9 4 2 34 34 H 1.08995 * 109.30348 * 219.18445 * 10 8 7 35 35 H 1.09002 * 109.29484 * 99.80673 * 10 8 7 36 36 H 1.08988 * 109.47374 * 294.99725 * 13 11 10 37 37 H 1.09003 * 109.46776 * 55.00522 * 13 11 10 38 38 H 0.96994 * 119.99657 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.79971 * 56.32859 * 22 11 10 40 40 H 1.09001 * 109.79394 * 177.19720 * 22 11 10 41 41 H 0.96993 * 120.54076 * 346.66420 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6969 -0.2367 2.4858 6 6 2.1587 -0.8865 3.6126 7 6 2.9591 -2.0167 3.4855 8 6 3.2924 -2.4925 2.2271 9 6 2.8264 -1.8333 1.1017 10 6 4.1529 -3.7159 2.0507 11 6 4.9601 -3.9896 3.3195 12 1 5.7068 -3.2069 3.4532 13 6 5.6559 -5.3472 3.2013 14 6 6.5475 -5.5604 4.3975 15 1 6.6112 -4.8036 5.1653 16 6 7.2819 -6.7217 4.5115 17 7 7.2047 -7.6431 3.5763 18 14 8.3866 -6.9863 5.9945 19 1 8.2957 -5.8095 6.8957 20 1 7.9511 -8.2035 6.7252 21 1 9.7906 -7.1564 5.5418 22 6 4.0060 -4.0008 4.5210 23 7 3.4189 -2.6592 4.6403 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.0745 0.6403 2.5843 32 1 1.8978 -0.5174 4.5935 33 1 3.0846 -2.1992 0.1189 34 1 4.8359 -3.5586 1.2160 35 1 3.5176 -4.5751 1.8354 36 1 4.9063 -6.1374 3.1615 37 1 6.2564 -5.3697 2.2919 38 1 7.7217 -8.4599 3.6564 39 1 3.2175 -4.7357 4.3595 40 1 4.5583 -4.2441 5.4287 41 1 3.3514 -2.2259 5.5055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084783713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:01 Heat of formation + Delta-G solvation = -9.127935 kcal Electronic energy + Delta-G solvation = -18993.666690 eV Core-core repulsion = 16257.479297 eV Total energy + Delta-G solvation = -2736.187394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85799 -37.26131 -34.69225 -33.33999 -32.48679 -30.44145 -28.75036 -27.15962 -26.87464 -24.21127 -23.57638 -22.33140 -21.68033 -19.79474 -18.31049 -17.01012 -16.46059 -15.89719 -15.11953 -14.49954 -14.33045 -14.07131 -13.74592 -13.56132 -13.23684 -13.05318 -12.64747 -12.59399 -12.40529 -12.26874 -12.09056 -11.43661 -11.31572 -11.19034 -11.09960 -10.81899 -10.74795 -10.60388 -10.36367 -10.15760 -10.01751 -9.43616 -9.16371 -8.99488 -8.38905 -8.35052 -6.89071 -6.03119 -4.05537 1.74037 1.91360 3.28417 3.36513 3.39509 3.95774 4.12559 4.42822 4.80861 4.88423 5.22595 5.23156 5.25923 5.32889 5.46664 5.56811 5.58181 5.69868 5.73454 5.78004 5.79129 5.92551 5.94604 5.98835 6.15351 6.22307 6.22782 6.32178 6.38845 6.41006 6.66628 6.77386 6.85576 6.88330 6.97766 7.04108 7.26341 7.62269 7.75878 7.78032 7.96511 8.19924 8.38030 9.00866 9.58734 11.08053 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042855 B = 0.003950 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.214163 B = 7087.264951 C = 7421.831768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.078 4.078 6 C -0.199 4.199 7 C 0.220 3.780 8 C -0.142 4.142 9 C -0.076 4.076 10 C -0.071 4.071 11 C -0.094 4.094 12 H 0.062 0.938 13 C 0.029 3.971 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.133 3.867 23 N -0.752 5.752 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.018 0.982 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 14.453 -4.034 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.097 4.097 6 C -0.221 4.221 7 C 0.116 3.884 8 C -0.146 4.146 9 C -0.094 4.094 10 C -0.108 4.108 11 C -0.113 4.113 12 H 0.081 0.919 13 C -0.009 4.009 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.009 3.991 23 N -0.381 5.381 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.613 14.072 -4.097 18.700 hybrid contribution 0.677 -0.117 1.176 1.362 sum -10.936 13.955 -2.920 17.968 Atomic orbital electron populations 1.21850 0.95073 1.01766 1.01254 1.19953 0.95309 0.95579 0.95740 1.21852 1.01233 0.95627 1.01248 1.19410 1.02789 0.98011 0.94146 1.20520 0.98897 0.98671 0.91627 1.20585 1.03962 0.99052 0.98550 1.17655 0.91835 0.91658 0.87223 1.19541 1.03133 1.00626 0.91316 1.20759 0.96634 0.94536 0.97504 1.20474 0.96874 0.94000 0.99430 1.21521 0.95948 1.01490 0.92388 0.91919 1.19104 0.94989 0.89443 0.97358 1.21263 1.25332 1.02706 1.06414 0.92591 1.25016 0.96941 0.96179 0.96236 1.69970 1.41614 1.08228 1.33475 0.86580 0.80615 0.78069 0.83000 1.19795 1.21049 1.21033 1.21696 0.95216 0.81539 1.00629 1.44991 1.67923 1.19053 1.06124 0.92745 0.93012 0.92663 0.91053 0.93013 0.92746 0.92634 0.87016 0.86904 0.86718 0.91384 0.91483 0.96326 0.96170 0.93036 0.93094 0.89437 0.77234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.01 37.16 0.33 -1.00 16 2 C -0.05 -0.50 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.35 9.01 37.16 0.33 -1.01 16 4 C -0.14 -1.87 4.78 -104.64 -0.50 -2.37 16 5 C -0.08 -1.02 8.70 -39.63 -0.34 -1.37 16 6 C -0.20 -2.81 9.88 -39.35 -0.39 -3.20 16 7 C 0.22 3.59 6.47 -83.72 -0.54 3.04 16 8 C -0.14 -2.38 5.76 -104.44 -0.60 -2.98 16 9 C -0.08 -1.12 9.29 -39.53 -0.37 -1.49 16 10 C -0.07 -1.28 5.08 -28.00 -0.14 -1.42 16 11 C -0.09 -1.92 2.29 -90.47 -0.21 -2.13 16 12 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 13 C 0.03 0.71 4.44 -27.88 -0.12 0.59 16 14 C -0.52 -14.08 8.39 -34.44 -0.29 -14.37 16 15 H 0.06 1.48 7.13 -52.49 -0.37 1.10 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.13 2.45 6.25 -3.58 -0.02 2.43 16 23 N -0.75 -12.03 5.80 -58.08 -0.34 -12.37 16 24 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.50 7.39 -51.93 -0.38 0.11 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.21 7.10 -52.49 -0.37 0.84 16 32 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.11 1.54 7.93 -52.49 -0.42 1.12 16 34 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 35 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 36 H 0.02 0.49 8.14 -51.94 -0.42 0.06 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.66 6.98 -51.93 -0.36 1.30 16 41 H 0.39 5.32 8.86 -40.82 -0.36 4.96 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -29.09 326.22 -9.79 -38.88 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.85 Total: 2.51 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -3.24 Total: -24.55 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.40 Total: -37.97 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.09 -9.79 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084783713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.749 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds