Wall clock time and date at job start Mon Mar 30 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46904 * 2 1 4 4 C 1.50700 * 109.47309 * 120.00329 * 2 1 3 5 5 C 1.38311 * 119.91375 * 300.01825 * 4 2 1 6 6 C 1.38026 * 119.90285 * 180.09158 * 5 4 2 7 7 C 1.39071 * 120.03849 * 359.93635 * 6 5 4 8 8 C 1.38606 * 120.02078 * 359.92033 * 7 6 5 9 9 C 1.38121 * 119.92102 * 120.00015 * 4 2 1 10 10 C 1.50602 * 121.50840 * 180.21056 * 8 7 6 11 11 C 1.52856 * 110.48657 * 339.49816 * 10 8 7 12 12 H 1.08999 * 109.57598 * 291.50397 * 11 10 8 13 13 C 1.53004 * 109.57066 * 171.24630 * 11 10 8 14 14 C 1.50708 * 109.46767 * 174.99640 * 13 11 10 15 15 H 1.08000 * 119.99981 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99776 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47050 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46924 * 119.99883 * 18 16 14 21 21 H 1.48496 * 109.46995 * 240.00189 * 18 16 14 22 22 C 1.53433 * 108.83963 * 51.31617 * 11 10 8 23 23 N 1.39923 * 119.13807 * 179.88048 * 7 6 5 24 24 H 1.08995 * 109.46929 * 299.99625 * 1 2 3 25 25 H 1.08997 * 109.47506 * 59.99957 * 1 2 3 26 26 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46996 * 240.00118 * 2 1 3 28 28 H 1.09000 * 109.47460 * 299.99969 * 3 2 1 29 29 H 1.09004 * 109.47198 * 60.00241 * 3 2 1 30 30 H 1.09002 * 109.47123 * 180.02562 * 3 2 1 31 31 H 1.07993 * 120.05216 * 0.09735 * 5 4 2 32 32 H 1.08010 * 119.98183 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.84341 * 359.97438 * 9 4 2 34 34 H 1.08995 * 109.30348 * 219.18445 * 10 8 7 35 35 H 1.09002 * 109.29484 * 99.80673 * 10 8 7 36 36 H 1.08988 * 109.47374 * 294.99725 * 13 11 10 37 37 H 1.09003 * 109.46776 * 55.00522 * 13 11 10 38 38 H 0.96994 * 119.99657 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.79971 * 56.32859 * 22 11 10 40 40 H 1.09001 * 109.79394 * 177.19720 * 22 11 10 41 41 H 0.96993 * 120.54076 * 346.66420 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6969 -0.2367 2.4858 6 6 2.1587 -0.8865 3.6126 7 6 2.9591 -2.0167 3.4855 8 6 3.2924 -2.4925 2.2271 9 6 2.8264 -1.8333 1.1017 10 6 4.1529 -3.7159 2.0507 11 6 4.9601 -3.9896 3.3195 12 1 5.7068 -3.2069 3.4532 13 6 5.6559 -5.3472 3.2013 14 6 6.5475 -5.5604 4.3975 15 1 6.6112 -4.8036 5.1653 16 6 7.2819 -6.7217 4.5115 17 7 7.2047 -7.6431 3.5763 18 14 8.3866 -6.9863 5.9945 19 1 8.2957 -5.8095 6.8957 20 1 7.9511 -8.2035 6.7252 21 1 9.7906 -7.1564 5.5418 22 6 4.0060 -4.0008 4.5210 23 7 3.4189 -2.6592 4.6403 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.0745 0.6403 2.5843 32 1 1.8978 -0.5174 4.5935 33 1 3.0846 -2.1992 0.1189 34 1 4.8359 -3.5586 1.2160 35 1 3.5176 -4.5751 1.8354 36 1 4.9063 -6.1374 3.1615 37 1 6.2564 -5.3697 2.2919 38 1 7.7217 -8.4599 3.6564 39 1 3.2175 -4.7357 4.3595 40 1 4.5583 -4.2441 5.4287 41 1 3.3514 -2.2259 5.5055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084783713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:57 Heat of formation + Delta-G solvation = -23.661067 kcal Electronic energy + Delta-G solvation = -18994.296894 eV Core-core repulsion = 16257.479297 eV Total energy + Delta-G solvation = -2736.817597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -41.07014 -38.49934 -36.07528 -34.73977 -34.20015 -31.93052 -29.90394 -28.66741 -27.87199 -25.57230 -25.33068 -23.53086 -22.92723 -21.18970 -19.65953 -18.48854 -18.21336 -17.12500 -16.59859 -16.11034 -15.67389 -15.22241 -14.99196 -14.60678 -14.49655 -14.26138 -14.11609 -13.97915 -13.68511 -13.57471 -13.18611 -13.04601 -12.86239 -12.62400 -12.51342 -12.15626 -12.02326 -11.95272 -11.65407 -11.59152 -11.40643 -11.17392 -10.89164 -10.61328 -10.50751 -9.52322 -8.18701 -8.11353 -6.28457 0.59337 0.77778 1.40087 1.41028 1.53259 2.41313 2.68136 2.98275 3.15598 3.80552 3.98674 4.06655 4.13992 4.17044 4.26262 4.45519 4.47419 4.55596 4.63477 4.70345 4.78432 4.82280 4.90385 4.98709 5.05199 5.08654 5.15188 5.17676 5.20838 5.24756 5.32819 5.40006 5.49818 5.49856 5.57509 5.70597 5.71186 5.85010 5.93415 6.08308 6.25466 6.49416 6.86812 7.04350 7.40374 8.93620 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042855 B = 0.003950 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.214163 B = 7087.264951 C = 7421.831768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.075 4.075 6 C -0.195 4.195 7 C 0.197 3.803 8 C -0.166 4.166 9 C -0.086 4.086 10 C -0.064 4.064 11 C -0.084 4.084 12 H 0.050 0.950 13 C 0.036 3.964 14 C -0.531 4.531 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.961 3.039 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.282 1.282 22 C 0.144 3.856 23 N -0.748 5.748 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.058 0.942 36 H -0.004 1.004 37 H -0.009 1.009 38 H 0.262 0.738 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.898 16.782 -3.327 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.217 4.217 7 C 0.094 3.906 8 C -0.171 4.171 9 C -0.105 4.105 10 C -0.101 4.101 11 C -0.104 4.104 12 H 0.068 0.932 13 C -0.001 4.001 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.786 3.214 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.207 1.207 22 C 0.020 3.980 23 N -0.379 5.379 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.014 0.986 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.763 16.436 -3.388 21.083 hybrid contribution 0.974 -0.782 0.857 1.515 sum -11.788 15.654 -2.530 19.759 Atomic orbital electron populations 1.21828 0.93832 1.01577 1.02436 1.20022 0.96268 0.96045 0.94379 1.21832 1.00607 0.94829 1.02440 1.19764 1.01353 0.97080 0.95625 1.20883 0.98370 0.99109 0.91023 1.20864 1.02771 0.97917 1.00152 1.17881 0.93061 0.92821 0.86814 1.19502 1.04309 1.00628 0.92648 1.20917 0.97103 0.95195 0.97251 1.20315 0.96757 0.94995 0.98030 1.21293 0.96152 0.98100 0.94841 0.93151 1.18950 0.94118 0.91467 0.95594 1.21634 1.25413 1.02882 1.06961 0.91951 1.25931 0.98560 0.95934 0.99284 1.70104 1.42801 1.08853 1.35617 0.85456 0.78284 0.78351 0.79303 1.18516 1.20475 1.20750 1.21354 0.94480 0.83111 0.99092 1.44746 1.68162 1.18077 1.06962 0.92118 0.91337 0.93552 0.91058 0.91326 0.92114 0.93626 0.84155 0.84647 0.86073 0.91674 0.92312 0.98563 0.99082 0.92873 0.93798 0.90079 0.75676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.01 71.98 0.65 -1.54 16 2 C -0.05 -0.90 3.09 -11.54 -0.04 -0.94 16 3 C -0.14 -2.22 9.01 71.98 0.65 -1.57 16 4 C -0.14 -3.30 4.78 -19.87 -0.10 -3.40 16 5 C -0.08 -1.73 8.70 22.24 0.19 -1.53 16 6 C -0.19 -5.00 9.88 22.42 0.22 -4.78 16 7 C 0.20 6.22 6.47 38.14 0.25 6.47 16 8 C -0.17 -5.60 5.76 -19.74 -0.11 -5.71 16 9 C -0.09 -2.49 9.29 22.30 0.21 -2.29 16 10 C -0.06 -2.41 5.08 29.77 0.15 -2.26 16 11 C -0.08 -3.58 2.29 -10.69 -0.02 -3.61 16 12 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 13 C 0.04 1.90 4.44 29.85 0.13 2.04 16 14 C -0.53 -29.49 8.39 25.60 0.21 -29.27 16 15 H 0.06 3.31 7.13 -2.91 -0.02 3.29 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 18 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.14 5.43 6.25 86.44 0.54 5.97 16 23 N -0.75 -23.43 5.80 -337.67 -1.96 -25.39 16 24 H 0.06 0.88 7.38 -2.39 -0.02 0.86 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.33 7.87 -2.38 -0.02 1.31 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.89 7.39 -2.38 -0.02 0.87 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.14 2.42 7.10 -2.91 -0.02 2.40 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.12 3.23 7.93 -2.91 -0.02 3.20 16 34 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 35 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 36 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 3.12 6.98 -2.39 -0.02 3.10 16 41 H 0.41 10.44 8.86 -92.71 -0.82 9.61 16 Total: -1.00 -63.21 326.22 3.93 -59.29 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.18 Total: 18.33 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 3.40 Total: -41.92 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -1.67 Total: -81.59 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -63.21 3.93 -59.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084783713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.627 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds