Wall clock time and date at job start Mon Mar 30 2020 07:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.38303 * 119.92352 * 300.00386 * 4 2 1 6 6 C 1.38027 * 119.91277 * 179.89841 * 5 4 2 7 7 C 1.39074 * 120.02957 * 0.02562 * 6 5 4 8 8 C 1.38600 * 120.02703 * 0.14411 * 7 6 5 9 9 C 1.38133 * 119.91593 * 119.72459 * 4 2 1 10 10 C 1.50591 * 121.49983 * 179.53249 * 8 7 6 11 11 C 1.52852 * 110.49644 * 20.75292 * 10 8 7 12 12 H 1.08995 * 109.56765 * 68.49149 * 11 10 8 13 13 C 1.53001 * 109.57227 * 188.86497 * 11 10 8 14 14 C 1.50698 * 109.46993 * 185.00077 * 13 11 10 15 15 H 1.07996 * 119.99930 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00105 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00040 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00264 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47524 * 59.99689 * 18 16 14 20 20 H 1.48504 * 109.47539 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46808 * 299.99967 * 18 16 14 22 22 C 1.53424 * 108.85917 * 308.67961 * 11 10 8 23 23 N 1.39924 * 119.13515 * 180.36299 * 7 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.08001 * 120.04547 * 359.92357 * 5 4 2 32 32 H 1.08001 * 119.98023 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.84531 * 0.02562 * 9 4 2 34 34 H 1.08999 * 109.27278 * 141.02100 * 10 8 7 35 35 H 1.09009 * 109.27309 * 260.48901 * 10 8 7 36 36 H 1.09000 * 109.46982 * 305.00260 * 13 11 10 37 37 H 1.09004 * 109.47132 * 65.00226 * 13 11 10 38 38 H 0.96999 * 120.00396 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.79350 * 182.73573 * 22 11 10 40 40 H 1.08999 * 109.79427 * 303.58717 * 22 11 10 41 41 H 0.96998 * 120.54459 * 13.51274 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6973 -0.2365 2.4858 6 6 2.1558 -0.8886 3.6126 7 6 2.9541 -2.0202 3.4855 8 6 3.2925 -2.4925 2.2271 9 6 2.8218 -1.8366 1.1017 10 6 4.1633 -3.7084 2.0509 11 6 4.1514 -4.5634 3.3179 12 1 3.1656 -5.0097 3.4479 13 6 5.2051 -5.6666 3.2018 14 6 5.1086 -6.5811 4.3956 15 1 4.3694 -6.3944 5.1605 16 6 5.9634 -7.6567 4.5109 17 7 6.8632 -7.8844 3.5793 18 14 5.8433 -8.7908 5.9904 19 1 4.4904 -9.4010 6.0380 20 1 6.8661 -9.8615 5.8778 21 1 6.0785 -8.0109 7.2322 22 6 4.4738 -3.6694 4.5225 23 7 3.4023 -2.6711 4.6402 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.0773 0.6423 2.5843 32 1 1.8951 -0.5193 4.5935 33 1 3.0770 -2.2046 0.1189 34 1 3.7907 -4.2996 1.2144 35 1 5.1849 -3.3919 1.8401 36 1 5.0326 -6.2392 2.2905 37 1 6.1981 -5.2183 3.1667 38 1 7.4648 -8.6409 3.6605 39 1 4.5171 -4.2731 5.4290 40 1 5.4292 -3.1689 4.3654 41 1 3.0118 -2.4667 5.5043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084783715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:05 Heat of formation + Delta-G solvation = -9.045280 kcal Electronic energy + Delta-G solvation = -18993.632106 eV Core-core repulsion = 16257.448297 eV Total energy + Delta-G solvation = -2736.183809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85800 -37.26186 -34.69288 -33.33877 -32.48582 -30.44178 -28.75004 -27.15950 -26.87161 -24.20966 -23.57321 -22.33019 -21.67895 -19.79393 -18.31224 -17.00954 -16.45717 -15.89472 -15.11695 -14.50483 -14.33335 -14.07095 -13.74369 -13.56414 -13.23298 -13.05075 -12.64712 -12.59318 -12.40298 -12.26747 -12.08374 -11.43641 -11.30987 -11.18981 -11.09853 -10.80055 -10.76251 -10.60128 -10.37430 -10.16969 -10.01286 -9.43338 -9.16014 -9.01289 -8.38113 -8.34984 -6.89101 -6.02627 -4.05270 1.74040 1.91299 3.30653 3.35874 3.37658 3.95933 4.12477 4.42982 4.80877 4.88412 5.22574 5.23210 5.25932 5.33117 5.46649 5.56812 5.58246 5.69917 5.73476 5.78024 5.79222 5.92589 5.94637 5.98864 6.15413 6.22298 6.22807 6.32385 6.38930 6.40994 6.66656 6.77472 6.85582 6.88483 6.97753 7.04101 7.26387 7.62016 7.76029 7.78069 7.96705 8.20011 8.38223 9.00682 9.58845 11.08473 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042887 B = 0.003949 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.715552 B = 7087.975384 C = 7422.239623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.079 4.079 6 C -0.199 4.199 7 C 0.220 3.780 8 C -0.142 4.142 9 C -0.076 4.076 10 C -0.071 4.071 11 C -0.094 4.094 12 H 0.062 0.938 13 C 0.029 3.971 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.133 3.867 23 N -0.753 5.753 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 15.856 -4.046 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.144 4.144 5 C -0.097 4.097 6 C -0.221 4.221 7 C 0.116 3.884 8 C -0.146 4.146 9 C -0.094 4.094 10 C -0.108 4.108 11 C -0.114 4.114 12 H 0.081 0.919 13 C -0.008 4.008 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.009 3.991 23 N -0.381 5.381 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.412 15.581 -4.113 18.662 hybrid contribution -0.136 -0.668 1.191 1.372 sum -9.548 14.913 -2.922 17.947 Atomic orbital electron populations 1.21855 0.95061 1.01800 1.01248 1.19953 0.95328 0.95562 0.95739 1.21848 1.01194 0.95643 1.01253 1.19411 1.02738 0.98056 0.94147 1.20519 0.98832 0.98741 0.91628 1.20586 1.05545 0.97466 0.98549 1.17655 0.92953 0.90547 0.87223 1.19542 1.04249 0.99488 0.91323 1.20765 0.96621 0.94548 0.97502 1.20475 0.97951 0.92907 0.99445 1.21519 1.01569 0.95870 0.92394 0.91917 1.19092 0.92767 0.91634 0.97324 1.21187 1.17305 1.10705 1.06685 0.92701 1.25009 0.95405 0.97670 0.96226 1.69948 1.20213 1.29504 1.33642 0.86694 0.77747 0.80541 0.83223 1.20287 1.21305 1.20280 1.21696 0.88240 0.88531 1.00617 1.44990 1.42038 1.44834 1.06247 0.93011 0.92635 0.92746 0.91051 0.92745 0.92662 0.93012 0.87018 0.86902 0.86715 0.91379 0.91469 0.96189 0.96333 0.92915 0.89439 0.93098 0.77232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.01 37.16 0.33 -1.01 16 2 C -0.05 -0.50 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.33 9.01 37.16 0.33 -1.00 16 4 C -0.14 -1.87 4.78 -104.64 -0.50 -2.37 16 5 C -0.08 -1.02 8.70 -39.63 -0.34 -1.37 16 6 C -0.20 -2.81 9.88 -39.35 -0.39 -3.20 16 7 C 0.22 3.59 6.48 -83.72 -0.54 3.04 16 8 C -0.14 -2.38 5.76 -104.44 -0.60 -2.98 16 9 C -0.08 -1.12 9.29 -39.52 -0.37 -1.49 16 10 C -0.07 -1.28 5.08 -28.01 -0.14 -1.43 16 11 C -0.09 -1.93 2.30 -90.48 -0.21 -2.13 16 12 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 13 C 0.03 0.73 4.44 -27.88 -0.12 0.61 16 14 C -0.52 -14.14 8.39 -34.44 -0.29 -14.43 16 15 H 0.05 1.44 7.13 -52.49 -0.37 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.13 2.45 6.24 -3.59 -0.02 2.43 16 23 N -0.75 -12.04 5.80 -58.09 -0.34 -12.37 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.50 7.39 -51.93 -0.38 0.11 16 27 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 28 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 1.21 7.10 -52.49 -0.37 0.84 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.54 7.93 -52.49 -0.42 1.12 16 34 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 35 H 0.07 1.22 8.12 -51.92 -0.42 0.80 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.09 1.67 6.97 -51.93 -0.36 1.30 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.39 5.32 8.86 -40.82 -0.36 4.96 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -29.05 326.20 -9.79 -38.84 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.85 Total: 2.59 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.24 Total: -24.56 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.40 Total: -38.01 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.05 -9.79 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084783715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.794 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds