Wall clock time and date at job start Mon Mar 30 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.38303 * 119.92352 * 300.00386 * 4 2 1 6 6 C 1.38027 * 119.91277 * 179.89841 * 5 4 2 7 7 C 1.39074 * 120.02957 * 0.02562 * 6 5 4 8 8 C 1.38600 * 120.02703 * 0.14411 * 7 6 5 9 9 C 1.38133 * 119.91593 * 119.72459 * 4 2 1 10 10 C 1.50591 * 121.49983 * 179.53249 * 8 7 6 11 11 C 1.52852 * 110.49644 * 20.75292 * 10 8 7 12 12 H 1.08995 * 109.56765 * 68.49149 * 11 10 8 13 13 C 1.53001 * 109.57227 * 188.86497 * 11 10 8 14 14 C 1.50698 * 109.46993 * 185.00077 * 13 11 10 15 15 H 1.07996 * 119.99930 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00105 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00040 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00264 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47524 * 59.99689 * 18 16 14 20 20 H 1.48504 * 109.47539 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46808 * 299.99967 * 18 16 14 22 22 C 1.53424 * 108.85917 * 308.67961 * 11 10 8 23 23 N 1.39924 * 119.13515 * 180.36299 * 7 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.08001 * 120.04547 * 359.92357 * 5 4 2 32 32 H 1.08001 * 119.98023 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.84531 * 0.02562 * 9 4 2 34 34 H 1.08999 * 109.27278 * 141.02100 * 10 8 7 35 35 H 1.09009 * 109.27309 * 260.48901 * 10 8 7 36 36 H 1.09000 * 109.46982 * 305.00260 * 13 11 10 37 37 H 1.09004 * 109.47132 * 65.00226 * 13 11 10 38 38 H 0.96999 * 120.00396 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.79350 * 182.73573 * 22 11 10 40 40 H 1.08999 * 109.79427 * 303.58717 * 22 11 10 41 41 H 0.96998 * 120.54459 * 13.51274 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6973 -0.2365 2.4858 6 6 2.1558 -0.8886 3.6126 7 6 2.9541 -2.0202 3.4855 8 6 3.2925 -2.4925 2.2271 9 6 2.8218 -1.8366 1.1017 10 6 4.1633 -3.7084 2.0509 11 6 4.1514 -4.5634 3.3179 12 1 3.1656 -5.0097 3.4479 13 6 5.2051 -5.6666 3.2018 14 6 5.1086 -6.5811 4.3956 15 1 4.3694 -6.3944 5.1605 16 6 5.9634 -7.6567 4.5109 17 7 6.8632 -7.8844 3.5793 18 14 5.8433 -8.7908 5.9904 19 1 4.4904 -9.4010 6.0380 20 1 6.8661 -9.8615 5.8778 21 1 6.0785 -8.0109 7.2322 22 6 4.4738 -3.6694 4.5225 23 7 3.4023 -2.6711 4.6402 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.0773 0.6423 2.5843 32 1 1.8951 -0.5193 4.5935 33 1 3.0770 -2.2046 0.1189 34 1 3.7907 -4.2996 1.2144 35 1 5.1849 -3.3919 1.8401 36 1 5.0326 -6.2392 2.2905 37 1 6.1981 -5.2183 3.1667 38 1 7.4648 -8.6409 3.6605 39 1 4.5171 -4.2731 5.4290 40 1 5.4292 -3.1689 4.3654 41 1 3.0118 -2.4667 5.5043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084783715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:04 Heat of formation + Delta-G solvation = -23.550927 kcal Electronic energy + Delta-G solvation = -18994.261118 eV Core-core repulsion = 16257.448297 eV Total energy + Delta-G solvation = -2736.812821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.07086 -38.50066 -36.07576 -34.73923 -34.20022 -31.93141 -29.90418 -28.66481 -27.87204 -25.57171 -25.32719 -23.52999 -22.92691 -21.19048 -19.66163 -18.48309 -18.21258 -17.12409 -16.60062 -16.11320 -15.67672 -15.22045 -14.98883 -14.60904 -14.49147 -14.25704 -14.11457 -13.97604 -13.68492 -13.57691 -13.17463 -13.05100 -12.86071 -12.58531 -12.53229 -12.18191 -12.02033 -11.95372 -11.66252 -11.59221 -11.40870 -11.17769 -10.90220 -10.60483 -10.49955 -9.52343 -8.18318 -8.11428 -6.28324 0.59293 0.77668 1.40874 1.43079 1.50800 2.41574 2.68216 2.98166 3.15774 3.80501 3.98634 4.06660 4.14039 4.17011 4.26279 4.45491 4.47380 4.55566 4.63478 4.70347 4.78395 4.82320 4.90372 4.98643 5.05156 5.08634 5.15134 5.17573 5.20823 5.24767 5.32810 5.39992 5.49570 5.49820 5.57473 5.70583 5.71121 5.84913 5.93365 6.08287 6.25516 6.49378 6.86567 7.04397 7.40423 8.93628 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042887 B = 0.003949 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.715552 B = 7087.975384 C = 7422.239623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.076 4.076 6 C -0.195 4.195 7 C 0.197 3.803 8 C -0.166 4.166 9 C -0.086 4.086 10 C -0.064 4.064 11 C -0.084 4.084 12 H 0.050 0.950 13 C 0.037 3.963 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.144 3.856 23 N -0.748 5.748 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.058 0.942 36 H -0.009 1.009 37 H -0.004 1.004 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 17.701 -3.319 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.217 4.217 7 C 0.094 3.906 8 C -0.171 4.171 9 C -0.105 4.105 10 C -0.101 4.101 11 C -0.104 4.104 12 H 0.069 0.931 13 C -0.001 4.001 14 C -0.571 4.571 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.786 3.214 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.020 3.980 23 N -0.380 5.380 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.009 0.991 37 H 0.014 0.986 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -11.275 17.455 -3.383 21.053 hybrid contribution 0.395 -1.169 0.864 1.506 sum -10.879 16.286 -2.518 19.747 Atomic orbital electron populations 1.21834 0.93893 1.01543 1.02441 1.20022 0.96224 0.96089 0.94377 1.21826 1.00636 0.94772 1.02436 1.19765 1.01299 0.97127 0.95627 1.20883 0.98296 0.99189 0.91024 1.20864 1.04320 0.96362 1.00150 1.17882 0.94188 0.91702 0.86812 1.19502 1.05389 0.99526 0.92656 1.20924 0.97044 0.95254 0.97250 1.20317 0.98163 0.93568 0.98052 1.21290 0.99013 0.95240 0.94847 0.93130 1.18939 0.93062 0.92500 0.95560 1.21578 1.17255 1.11044 1.07261 0.91942 1.25928 0.94996 0.99451 0.99270 1.70089 1.21191 1.30297 1.35785 0.85567 0.77900 0.78312 0.79670 1.19483 1.21123 1.18956 1.21352 0.88917 0.88685 0.99082 1.44744 1.41710 1.44420 1.07086 0.91325 0.93624 0.92114 0.91055 0.92118 0.93554 0.91335 0.84156 0.84645 0.86069 0.91663 0.92311 0.99112 0.98583 0.92854 0.90072 0.93835 0.75669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.01 71.98 0.65 -1.57 16 2 C -0.05 -0.90 3.09 -11.54 -0.04 -0.94 16 3 C -0.14 -2.18 9.01 71.98 0.65 -1.54 16 4 C -0.14 -3.30 4.78 -19.87 -0.10 -3.40 16 5 C -0.08 -1.73 8.70 22.24 0.19 -1.53 16 6 C -0.19 -5.00 9.88 22.42 0.22 -4.77 16 7 C 0.20 6.22 6.48 38.14 0.25 6.47 16 8 C -0.17 -5.59 5.76 -19.75 -0.11 -5.71 16 9 C -0.09 -2.49 9.29 22.31 0.21 -2.29 16 10 C -0.06 -2.41 5.08 29.76 0.15 -2.26 16 11 C -0.08 -3.59 2.30 -10.70 -0.02 -3.61 16 12 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 13 C 0.04 1.94 4.44 29.85 0.13 2.07 16 14 C -0.53 -29.65 8.39 25.60 0.21 -29.43 16 15 H 0.06 3.30 7.13 -2.91 -0.02 3.28 16 16 C 0.00 0.07 5.46 84.65 0.46 0.54 16 17 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 18 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 C 0.14 5.43 6.24 86.44 0.54 5.97 16 23 N -0.75 -23.44 5.80 -337.70 -1.96 -25.40 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.89 7.39 -2.39 -0.02 0.87 16 27 H 0.07 1.33 7.87 -2.39 -0.02 1.31 16 28 H 0.06 0.88 7.38 -2.39 -0.02 0.86 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 2.42 7.10 -2.91 -0.02 2.40 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.12 3.23 7.93 -2.91 -0.02 3.21 16 34 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 35 H 0.06 2.26 8.12 -2.38 -0.02 2.24 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.08 3.13 6.97 -2.39 -0.02 3.11 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.41 10.43 8.86 -92.71 -0.82 9.61 16 Total: -1.00 -63.18 326.20 3.93 -59.26 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.18 Total: 18.57 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 3.40 Total: -42.00 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.67 Total: -81.67 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.18 3.93 -59.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084783715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.707 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds