Wall clock time and date at job start Mon Mar 30 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 C 1.50699 * 109.47282 * 120.00220 * 2 1 3 5 5 C 1.38304 * 119.96200 * 299.99693 * 4 2 1 6 6 C 1.38259 * 120.14901 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.07614 * 0.05015 * 6 5 4 8 8 C 1.38890 * 119.92586 * 0.22366 * 7 6 5 9 9 N 1.39671 * 120.07406 * 179.74790 * 8 7 6 10 10 C 1.46499 * 120.00287 * 354.74727 * 9 8 7 11 11 C 1.52999 * 109.46919 * 185.16709 * 10 9 8 12 12 C 1.50697 * 115.55180 * 65.19460 * 11 10 9 13 13 H 1.07997 * 120.00019 * 264.81075 * 12 11 10 14 14 C 1.37874 * 119.99914 * 84.82198 * 12 11 10 15 15 N 1.31510 * 120.00234 * 184.67416 * 14 12 11 16 16 Si 1.86807 * 120.00032 * 4.66613 * 14 12 11 17 17 H 1.48498 * 109.46598 * 94.53273 * 16 14 12 18 18 H 1.48502 * 109.47160 * 214.52991 * 16 14 12 19 19 H 1.48499 * 109.47183 * 334.53159 * 16 14 12 20 20 C 1.53002 * 117.49736 * 279.52468 * 11 10 9 21 21 C 1.53006 * 117.49809 * 210.86878 * 11 10 9 22 22 C 1.38088 * 119.96092 * 119.98156 * 4 2 1 23 23 H 1.09004 * 109.46440 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46853 * 299.99791 * 1 2 3 25 25 H 1.08997 * 109.47119 * 60.00186 * 1 2 3 26 26 H 1.09000 * 109.46853 * 240.00208 * 2 1 3 27 27 H 1.09003 * 109.46931 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47084 * 299.99835 * 3 2 1 29 29 H 1.09000 * 109.47199 * 60.00421 * 3 2 1 30 30 H 1.08005 * 119.92377 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.96239 * 180.02562 * 6 5 4 32 32 H 1.08005 * 120.03984 * 179.97438 * 7 6 5 33 33 H 0.97008 * 119.99748 * 174.74495 * 9 8 7 34 34 H 1.08998 * 109.47024 * 305.16623 * 10 9 8 35 35 H 1.09001 * 109.47027 * 65.16766 * 10 9 8 36 36 H 0.96999 * 120.00590 * 180.02562 * 15 14 12 37 37 H 1.08999 * 117.50094 * 0.02562 * 20 11 10 38 38 H 1.09003 * 117.50287 * 145.02294 * 20 11 10 39 39 H 1.08994 * 117.49722 * 214.98118 * 21 11 10 40 40 H 1.09006 * 117.49581 * 359.96980 * 21 11 10 41 41 H 1.07999 * 120.03666 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6979 -0.2373 2.4862 6 6 2.1562 -0.8864 3.6176 7 6 2.9510 -2.0096 3.4972 8 6 3.2936 -2.4842 2.2376 9 7 4.1014 -3.6166 2.1122 10 6 4.6828 -4.2374 3.3050 11 6 5.6203 -5.3711 2.8843 12 6 6.8442 -4.9498 2.1126 13 1 6.8363 -4.9731 1.0329 14 6 7.9741 -4.5350 2.7850 15 7 9.0094 -4.0805 2.1132 16 14 8.0345 -4.6183 4.6502 17 1 8.6724 -5.8924 5.0683 18 1 8.8253 -3.4745 5.1714 19 1 6.6540 -4.5541 5.1935 20 6 4.9854 -6.7155 2.5231 21 6 5.7595 -6.5620 3.8347 22 6 2.8259 -1.8333 1.1027 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.0772 0.6413 2.5832 31 1 1.8928 -0.5145 4.5968 32 1 3.3091 -2.5159 4.3814 33 1 4.2775 -3.9920 1.2352 34 1 5.2446 -3.4907 3.8661 35 1 3.8857 -4.6385 3.9310 36 1 9.8045 -3.7890 2.5862 37 1 3.8998 -6.7922 2.5848 38 1 5.4532 -7.2955 1.7276 39 1 6.7363 -7.0410 3.9015 40 1 5.1836 -6.5376 4.7599 41 1 3.0869 -2.2021 0.1218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:30 Heat of formation + Delta-G solvation = 33.698438 kcal Electronic energy + Delta-G solvation = -19016.978606 eV Core-core repulsion = 16282.648303 eV Total energy + Delta-G solvation = -2734.330303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.35168 -37.47408 -35.67498 -33.53647 -32.14618 -30.09557 -28.54424 -27.12392 -26.13365 -25.00075 -22.56844 -22.11773 -21.64152 -19.35451 -19.06405 -16.70296 -16.48288 -15.67918 -15.16885 -14.95168 -14.33275 -14.13829 -13.71787 -13.59819 -13.26877 -13.14983 -12.93315 -12.70660 -12.35717 -12.22930 -11.80103 -11.73175 -11.26465 -11.17013 -11.13054 -10.88831 -10.59672 -10.52915 -10.34466 -10.20091 -9.65814 -9.53995 -9.07101 -8.67255 -8.54614 -8.37029 -6.79681 -6.16465 -4.20284 1.81093 2.07343 3.24876 3.35521 3.38566 4.02838 4.27632 4.37559 4.82472 4.91289 4.95115 5.12369 5.25472 5.33247 5.50792 5.57879 5.61276 5.65933 5.72589 5.81820 5.83211 5.93582 5.97341 6.01679 6.06604 6.13275 6.18877 6.26187 6.29896 6.38884 6.40732 6.48101 6.65293 6.79916 6.91882 6.97467 7.04212 7.06173 7.34288 7.66572 7.99566 8.40667 8.44363 8.84566 9.46379 10.95178 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.004844 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.425679 B = 5778.854507 C = 5933.272643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.030 4.030 5 C -0.192 4.192 6 C -0.070 4.070 7 C -0.212 4.212 8 C 0.235 3.765 9 N -0.719 5.719 10 C 0.162 3.838 11 C -0.012 4.012 12 C -0.488 4.488 13 H 0.077 0.923 14 C 0.079 3.921 15 N -0.895 5.895 16 Si 0.878 3.122 17 H -0.280 1.280 18 H -0.293 1.293 19 H -0.256 1.256 20 C -0.179 4.179 21 C -0.193 4.193 22 C -0.202 4.202 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.403 0.597 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 6.059 -0.037 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.199 4.199 4 C -0.031 4.031 5 C -0.213 4.213 6 C -0.089 4.089 7 C -0.235 4.235 8 C 0.128 3.872 9 N -0.344 5.344 10 C 0.038 3.962 11 C -0.014 4.014 12 C -0.525 4.525 13 H 0.095 0.905 14 C -0.124 4.124 15 N -0.531 5.531 16 Si 0.706 3.294 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.180 1.180 20 C -0.217 4.217 21 C -0.230 4.230 22 C -0.225 4.225 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.238 0.762 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.474 6.025 0.160 15.678 hybrid contribution 0.453 -0.244 0.783 0.937 sum -14.020 5.781 0.943 15.195 Atomic orbital electron populations 1.21827 0.94669 1.01839 1.01477 1.20110 0.95632 0.95966 0.95845 1.21832 1.01455 0.95209 1.01439 1.19440 0.95452 0.94036 0.94200 1.20494 1.06384 1.02489 0.91909 1.20755 0.95875 0.94390 0.97861 1.20610 1.06123 1.00953 0.95818 1.17924 0.88959 0.86824 0.93537 1.44727 1.51426 1.28258 1.09981 1.21087 0.93623 0.95182 0.86353 1.19590 0.97045 0.85567 0.99160 1.20172 0.93794 1.44555 0.93993 0.90548 1.24966 0.95328 0.93724 0.98333 1.69893 1.05151 1.41988 1.36095 0.86855 0.78856 0.77359 0.86311 1.20575 1.22024 1.18041 1.22841 0.96942 1.03301 0.98573 1.22954 1.01199 1.05913 0.92978 1.20438 1.05863 0.99236 0.96982 0.92640 0.92511 0.92836 0.90755 0.92432 0.92828 0.92513 0.87316 0.86985 0.86658 0.76231 0.92574 0.94837 0.92516 0.90903 0.89514 0.89333 0.90836 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.01 37.16 0.33 -1.06 16 2 C -0.06 -0.66 3.09 -91.77 -0.28 -0.94 16 3 C -0.14 -1.49 9.01 37.16 0.33 -1.16 16 4 C -0.03 -0.44 4.78 -104.65 -0.50 -0.94 16 5 C -0.19 -2.68 8.71 -39.55 -0.34 -3.02 16 6 C -0.07 -1.03 10.04 -39.61 -0.40 -1.43 16 7 C -0.21 -3.57 9.30 -39.38 -0.37 -3.94 16 8 C 0.24 4.19 6.65 -83.79 -0.56 3.63 16 9 N -0.72 -13.70 5.63 -58.63 -0.33 -14.03 16 10 C 0.16 3.29 4.37 -4.04 -0.02 3.27 16 11 C -0.01 -0.27 0.79 -155.66 -0.12 -0.40 16 12 C -0.49 -12.99 9.31 -34.44 -0.32 -13.31 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 15 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 16 Si 0.88 21.19 24.95 -169.99 -4.24 16.95 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.26 -5.78 5.69 56.52 0.32 -5.46 16 20 C -0.18 -3.47 9.96 -26.69 -0.27 -3.73 16 21 C -0.19 -3.92 7.31 -26.69 -0.20 -4.11 16 22 C -0.20 -3.27 9.52 -39.38 -0.37 -3.64 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.54 7.38 -51.93 -0.38 0.16 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 30 H 0.11 1.29 7.09 -52.48 -0.37 0.92 16 31 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.12 1.92 6.76 -52.48 -0.35 1.57 16 33 H 0.40 7.64 8.47 -40.82 -0.35 7.29 16 34 H 0.06 1.23 6.82 -51.93 -0.35 0.88 16 35 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.09 1.89 7.13 -51.93 -0.37 1.52 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.12 1.75 7.94 -52.49 -0.42 1.34 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -28.53 327.97 -8.85 -37.38 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.82 Total: 9.39 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -3.17 Total: -28.66 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.44 Total: -40.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.24 Total: 16.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.53 -8.85 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.076 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds