Wall clock time and date at job start Mon Mar 30 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38281 * 119.96836 * 2 1 4 4 C 1.38286 * 120.15087 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96181 * 179.97438 * 4 3 2 6 6 C 1.38097 * 120.07709 * 0.02562 * 4 3 2 7 7 C 1.38914 * 119.92395 * 0.02562 * 6 4 3 8 8 N 1.39672 * 120.07436 * 179.97438 * 7 6 4 9 9 C 1.46502 * 120.00349 * 5.59848 * 8 7 6 10 10 C 1.46498 * 119.99872 * 185.60299 * 8 7 6 11 11 C 1.52998 * 109.47180 * 269.36638 * 10 8 7 12 12 C 1.50697 * 115.55214 * 279.09404 * 11 10 8 13 13 H 1.08000 * 120.00639 * 140.77372 * 12 11 10 14 14 C 1.37884 * 119.99964 * 320.77228 * 12 11 10 15 15 N 1.31513 * 120.00046 * 162.80875 * 14 12 11 16 16 Si 1.86805 * 119.99673 * 342.80700 * 14 12 11 17 17 H 1.48493 * 109.46733 * 95.71038 * 16 14 12 18 18 H 1.48499 * 109.46777 * 215.70913 * 16 14 12 19 19 H 1.48500 * 109.47231 * 335.70785 * 16 14 12 20 20 C 1.53007 * 117.49708 * 64.76159 * 11 10 8 21 21 C 1.52995 * 60.03305 * 107.50158 * 20 11 10 22 22 C 1.38112 * 119.95765 * 180.25692 * 2 1 3 23 23 H 1.08999 * 109.47204 * 89.99606 * 1 2 3 24 24 H 1.08997 * 109.47633 * 210.00285 * 1 2 3 25 25 H 1.09007 * 109.46595 * 329.99879 * 1 2 3 26 26 H 1.08004 * 119.92229 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.47605 * 270.02745 * 5 4 3 28 28 H 1.09007 * 109.47241 * 30.02300 * 5 4 3 29 29 H 1.08998 * 109.47194 * 150.02344 * 5 4 3 30 30 H 1.08002 * 120.03638 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.46738 * 273.28411 * 9 8 7 32 32 H 1.09000 * 109.46557 * 33.27401 * 9 8 7 33 33 H 1.08999 * 109.47390 * 153.27735 * 9 8 7 34 34 H 1.09004 * 109.47252 * 149.37227 * 10 8 7 35 35 H 1.08993 * 109.47359 * 29.36738 * 10 8 7 36 36 H 0.96996 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.09000 * 117.49446 * 215.00809 * 20 11 10 38 38 H 1.09000 * 117.49862 * 359.97438 * 20 11 10 39 39 H 1.09003 * 117.49778 * 107.49853 * 21 20 11 40 40 H 1.08997 * 117.50186 * 252.52556 * 21 20 11 41 41 H 1.07993 * 120.03961 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1979 0.0000 4 6 3.5806 1.2023 0.0005 5 6 4.3290 2.5103 -0.0001 6 6 4.2765 0.0095 0.0005 7 6 3.5857 -1.1957 -0.0005 8 7 4.2864 -2.4040 -0.0011 9 6 5.7461 -2.4044 0.1233 10 6 3.5616 -3.6710 -0.1261 11 6 3.2007 -4.1916 1.2666 12 6 4.3045 -4.9115 1.9976 13 1 4.4338 -4.7652 3.0598 14 6 5.1495 -5.7570 1.3103 15 7 6.2959 -6.1177 1.8444 16 14 4.6657 -6.3901 -0.3792 17 1 5.2773 -5.5300 -1.4238 18 1 5.1480 -7.7852 -0.5418 19 1 3.1873 -6.3585 -0.5151 20 6 2.2266 -3.3582 2.1018 21 6 1.7679 -4.6827 1.4886 22 6 2.1966 -1.1966 -0.0054 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5139 26 1 1.6559 2.1322 -0.0004 27 1 4.5095 2.8253 -1.0278 28 1 3.7370 3.2680 0.5134 29 1 5.2819 2.3839 0.5139 30 1 5.3565 0.0137 0.0014 31 1 6.1948 -2.2948 -0.8641 32 1 6.0569 -1.5743 0.7577 33 1 6.0726 -3.3442 0.5686 34 1 4.1911 -4.4010 -0.6350 35 1 2.6501 -3.5128 -0.7023 36 1 6.8901 -6.7128 1.3610 37 1 2.3843 -3.3306 3.1800 38 1 1.8432 -2.4388 1.6593 39 1 1.6238 -5.5265 2.1634 40 1 1.0828 -4.6349 0.6422 41 1 1.6566 -2.1318 -0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:11 Heat of formation + Delta-G solvation = 60.789365 kcal Electronic energy + Delta-G solvation = -19997.362586 eV Core-core repulsion = 17264.207034 eV Total energy + Delta-G solvation = -2733.155552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.58185 -37.37057 -35.01363 -33.20993 -32.30806 -30.40259 -28.04639 -27.07811 -26.29081 -25.38059 -24.09051 -21.45356 -20.29695 -20.02891 -18.92850 -16.77974 -16.31845 -15.64448 -15.06786 -14.94477 -14.33286 -13.78967 -13.56965 -13.42199 -13.18370 -13.02589 -12.89512 -12.54729 -12.39909 -12.15222 -11.98221 -11.64408 -11.37483 -11.24861 -11.05889 -10.95952 -10.60100 -10.45148 -10.17682 -9.98920 -9.77893 -9.32058 -9.02993 -8.73916 -8.34926 -8.13788 -6.63545 -6.24342 -4.12705 1.80277 2.06784 3.10880 3.28719 3.33253 3.75444 4.23116 4.27489 4.83067 5.08800 5.11892 5.32286 5.44537 5.55321 5.57061 5.66948 5.71370 5.77972 5.80904 5.86656 5.88275 5.95656 6.00304 6.03137 6.07840 6.15891 6.26430 6.38038 6.39731 6.55355 6.61291 6.65543 6.79207 6.82276 6.94406 7.02748 7.08690 7.19684 7.36145 7.68100 7.91393 8.16049 8.45824 8.84124 9.41115 10.87252 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.007041 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.800674 B = 3975.767115 C = 4581.813598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.041 4.041 3 C -0.196 4.196 4 C -0.041 4.041 5 C -0.110 4.110 6 C -0.211 4.211 7 C 0.241 3.759 8 N -0.604 5.604 9 C 0.092 3.908 10 C 0.149 3.851 11 C -0.009 4.009 12 C -0.476 4.476 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.885 5.885 16 Si 0.869 3.131 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.258 1.258 20 C -0.192 4.192 21 C -0.208 4.208 22 C -0.208 4.208 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.265 0.735 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 12.127 -5.767 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.042 4.042 3 C -0.216 4.216 4 C -0.041 4.041 5 C -0.167 4.167 6 C -0.234 4.234 7 C 0.135 3.865 8 N -0.309 5.309 9 C -0.051 4.051 10 C 0.026 3.974 11 C -0.011 4.011 12 C -0.513 4.513 13 H 0.093 0.907 14 C -0.125 4.125 15 N -0.521 5.521 16 Si 0.699 3.301 17 H -0.207 1.207 18 H -0.221 1.221 19 H -0.182 1.182 20 C -0.229 4.229 21 C -0.247 4.247 22 C -0.230 4.230 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.837 11.796 -5.780 14.375 hybrid contribution -0.124 -0.611 -0.755 0.979 sum -5.960 11.185 -6.535 14.260 Atomic orbital electron populations 1.20764 0.91936 1.02390 1.01794 1.19527 0.95150 0.92655 0.96827 1.20437 0.93240 0.96762 1.11152 1.19501 0.93560 0.94205 0.96878 1.20747 0.99794 0.94420 1.01749 1.20450 0.99267 0.90630 1.13082 1.17861 0.91120 0.85968 0.91525 1.46438 1.05567 1.02541 1.76367 1.21698 0.79491 1.04451 0.99432 1.21381 0.95225 0.84197 0.96565 1.19823 0.89446 0.98672 0.93203 1.20308 1.10251 1.24688 0.96084 0.90714 1.24937 0.93948 0.96077 0.97564 1.69971 1.08162 1.34607 1.39385 0.87146 0.80425 0.77693 0.84860 1.20684 1.22073 1.18244 1.23085 1.06553 0.94160 0.99060 1.23157 1.01109 0.97757 1.02661 1.20625 0.92397 0.97987 1.11985 0.91606 0.91692 0.91918 0.87332 0.91633 0.91953 0.91874 0.86479 0.94776 0.92299 0.88859 0.91526 0.92476 0.92459 0.90578 0.89144 0.89787 0.91630 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 36.00 0.36 -0.99 16 2 C -0.04 -0.62 5.88 -104.65 -0.62 -1.24 16 3 C -0.20 -2.85 9.35 -39.55 -0.37 -3.22 16 4 C -0.04 -0.60 5.88 -104.65 -0.62 -1.22 16 5 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 6 C -0.21 -3.54 8.82 -39.38 -0.35 -3.89 16 7 C 0.24 4.48 6.35 -83.79 -0.53 3.94 16 8 N -0.60 -12.20 2.98 -179.62 -0.53 -12.73 16 9 C 0.09 1.78 9.97 59.85 0.60 2.38 16 10 C 0.15 3.20 4.41 -4.04 -0.02 3.18 16 11 C -0.01 -0.22 1.32 -155.62 -0.21 -0.42 16 12 C -0.48 -12.90 9.04 -34.44 -0.31 -13.21 16 13 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 14 C 0.08 2.11 4.55 -17.82 -0.08 2.03 16 15 N -0.89 -25.49 13.96 55.43 0.77 -24.71 16 16 Si 0.87 20.75 24.51 -169.99 -4.17 16.59 16 17 H -0.28 -6.45 6.70 56.52 0.38 -6.07 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.26 -5.96 7.07 56.52 0.40 -5.56 16 20 C -0.19 -4.04 9.32 -26.73 -0.25 -4.29 16 21 C -0.21 -4.38 9.89 -26.69 -0.26 -4.65 16 22 C -0.21 -3.62 6.51 -39.38 -0.26 -3.88 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 25 H 0.06 0.66 8.09 -51.92 -0.42 0.24 16 26 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.12 1.84 6.38 -52.49 -0.33 1.51 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.04 6.64 -51.93 -0.34 0.69 16 33 H 0.09 2.09 6.69 -51.93 -0.35 1.74 16 34 H 0.07 1.52 2.59 -51.93 -0.13 1.38 16 35 H 0.06 1.13 6.20 -51.93 -0.32 0.81 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.09 1.77 4.23 -51.93 -0.22 1.55 16 39 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 40 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 41 H 0.12 2.21 4.88 -52.49 -0.26 1.96 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -28.44 316.78 -7.88 -36.32 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.18 Total: 6.12 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -2.55 Total: -26.36 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.24 Total: -37.45 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.17 Total: 16.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.44 -7.88 -36.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.107 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds