Wall clock time and date at job start Mon Mar 30 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38281 * 119.96836 * 2 1 4 4 C 1.38286 * 120.15087 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96181 * 179.97438 * 4 3 2 6 6 C 1.38097 * 120.07709 * 0.02562 * 4 3 2 7 7 C 1.38914 * 119.92395 * 0.02562 * 6 4 3 8 8 N 1.39672 * 120.07436 * 179.97438 * 7 6 4 9 9 C 1.46502 * 120.00349 * 5.59848 * 8 7 6 10 10 C 1.46498 * 119.99872 * 185.60299 * 8 7 6 11 11 C 1.52998 * 109.47180 * 269.36638 * 10 8 7 12 12 C 1.50697 * 115.55214 * 279.09404 * 11 10 8 13 13 H 1.08000 * 120.00639 * 140.77372 * 12 11 10 14 14 C 1.37884 * 119.99964 * 320.77228 * 12 11 10 15 15 N 1.31513 * 120.00046 * 162.80875 * 14 12 11 16 16 Si 1.86805 * 119.99673 * 342.80700 * 14 12 11 17 17 H 1.48493 * 109.46733 * 95.71038 * 16 14 12 18 18 H 1.48499 * 109.46777 * 215.70913 * 16 14 12 19 19 H 1.48500 * 109.47231 * 335.70785 * 16 14 12 20 20 C 1.53007 * 117.49708 * 64.76159 * 11 10 8 21 21 C 1.52995 * 60.03305 * 107.50158 * 20 11 10 22 22 C 1.38112 * 119.95765 * 180.25692 * 2 1 3 23 23 H 1.08999 * 109.47204 * 89.99606 * 1 2 3 24 24 H 1.08997 * 109.47633 * 210.00285 * 1 2 3 25 25 H 1.09007 * 109.46595 * 329.99879 * 1 2 3 26 26 H 1.08004 * 119.92229 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.47605 * 270.02745 * 5 4 3 28 28 H 1.09007 * 109.47241 * 30.02300 * 5 4 3 29 29 H 1.08998 * 109.47194 * 150.02344 * 5 4 3 30 30 H 1.08002 * 120.03638 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.46738 * 273.28411 * 9 8 7 32 32 H 1.09000 * 109.46557 * 33.27401 * 9 8 7 33 33 H 1.08999 * 109.47390 * 153.27735 * 9 8 7 34 34 H 1.09004 * 109.47252 * 149.37227 * 10 8 7 35 35 H 1.08993 * 109.47359 * 29.36738 * 10 8 7 36 36 H 0.96996 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.09000 * 117.49446 * 215.00809 * 20 11 10 38 38 H 1.09000 * 117.49862 * 359.97438 * 20 11 10 39 39 H 1.09003 * 117.49778 * 107.49853 * 21 20 11 40 40 H 1.08997 * 117.50186 * 252.52556 * 21 20 11 41 41 H 1.07993 * 120.03961 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1979 0.0000 4 6 3.5806 1.2023 0.0005 5 6 4.3290 2.5103 -0.0001 6 6 4.2765 0.0095 0.0005 7 6 3.5857 -1.1957 -0.0005 8 7 4.2864 -2.4040 -0.0011 9 6 5.7461 -2.4044 0.1233 10 6 3.5616 -3.6710 -0.1261 11 6 3.2007 -4.1916 1.2666 12 6 4.3045 -4.9115 1.9976 13 1 4.4338 -4.7652 3.0598 14 6 5.1495 -5.7570 1.3103 15 7 6.2959 -6.1177 1.8444 16 14 4.6657 -6.3901 -0.3792 17 1 5.2773 -5.5300 -1.4238 18 1 5.1480 -7.7852 -0.5418 19 1 3.1873 -6.3585 -0.5151 20 6 2.2266 -3.3582 2.1018 21 6 1.7679 -4.6827 1.4886 22 6 2.1966 -1.1966 -0.0054 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5139 26 1 1.6559 2.1322 -0.0004 27 1 4.5095 2.8253 -1.0278 28 1 3.7370 3.2680 0.5134 29 1 5.2819 2.3839 0.5139 30 1 5.3565 0.0137 0.0014 31 1 6.1948 -2.2948 -0.8641 32 1 6.0569 -1.5743 0.7577 33 1 6.0726 -3.3442 0.5686 34 1 4.1911 -4.4010 -0.6350 35 1 2.6501 -3.5128 -0.7023 36 1 6.8901 -6.7128 1.3610 37 1 2.3843 -3.3306 3.1800 38 1 1.8432 -2.4388 1.6593 39 1 1.6238 -5.5265 2.1634 40 1 1.0828 -4.6349 0.6422 41 1 1.6566 -2.1318 -0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:10 Heat of formation + Delta-G solvation = 46.246807 kcal Electronic energy + Delta-G solvation = -19997.993199 eV Core-core repulsion = 17264.207034 eV Total energy + Delta-G solvation = -2733.786165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.91280 -38.91551 -36.51609 -34.47334 -34.20068 -31.68593 -29.56581 -28.30817 -27.79043 -26.80510 -25.62400 -23.12701 -21.70768 -21.27561 -20.67937 -18.43863 -17.95349 -17.21843 -16.57909 -16.37609 -15.87197 -15.23337 -14.91201 -14.88410 -14.57465 -14.48929 -13.95173 -13.89794 -13.83138 -13.68008 -13.22261 -12.95619 -12.78734 -12.59928 -12.53869 -12.33811 -12.22819 -11.93922 -11.78847 -11.65414 -11.51876 -11.19523 -10.61487 -10.37530 -10.29118 -9.32170 -8.36386 -8.04049 -6.27631 0.60214 0.83798 1.21762 1.34338 1.44564 2.27282 2.28313 2.88053 3.01566 3.50146 3.90226 4.01841 4.06917 4.16343 4.26639 4.40102 4.45549 4.48963 4.55782 4.61113 4.64668 4.66043 4.74701 4.84621 4.89324 4.92103 4.93968 5.01351 5.02183 5.06941 5.16939 5.22588 5.26925 5.35443 5.49933 5.57912 5.67858 5.79060 5.91398 6.18452 6.30539 6.44652 6.67492 6.78699 7.28773 8.80135 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.007041 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.800674 B = 3975.767115 C = 4581.813598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.043 4.043 3 C -0.194 4.194 4 C -0.043 4.043 5 C -0.109 4.109 6 C -0.226 4.226 7 C 0.215 3.785 8 N -0.617 5.617 9 C 0.099 3.901 10 C 0.155 3.845 11 C -0.032 4.032 12 C -0.482 4.482 13 H 0.024 0.976 14 C 0.035 3.965 15 N -0.932 5.932 16 Si 0.928 3.072 17 H -0.267 1.267 18 H -0.298 1.298 19 H -0.240 1.240 20 C -0.181 4.181 21 C -0.193 4.193 22 C -0.225 4.225 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.267 0.733 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 14.368 -7.709 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.044 4.044 3 C -0.214 4.214 4 C -0.044 4.044 5 C -0.165 4.165 6 C -0.249 4.249 7 C 0.112 3.888 8 N -0.325 5.325 9 C -0.044 4.044 10 C 0.032 3.968 11 C -0.034 4.034 12 C -0.520 4.520 13 H 0.042 0.958 14 C -0.164 4.164 15 N -0.570 5.570 16 Si 0.755 3.245 17 H -0.194 1.194 18 H -0.225 1.225 19 H -0.163 1.163 20 C -0.218 4.218 21 C -0.231 4.231 22 C -0.247 4.247 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.155 0.845 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.105 14.079 -7.719 17.986 hybrid contribution 0.554 -1.150 -0.039 1.277 sum -7.551 12.929 -7.758 16.863 Atomic orbital electron populations 1.20824 0.89551 1.03325 1.03040 1.19934 0.96969 0.92097 0.95379 1.20851 0.93322 0.97731 1.09529 1.19938 0.94174 0.94936 0.95305 1.20804 0.99780 0.92939 1.02996 1.20651 0.99653 0.90955 1.13639 1.18138 0.91829 0.85740 0.93049 1.46393 1.05491 1.02787 1.77827 1.21563 0.79921 1.02651 1.00288 1.21197 0.95822 0.84606 0.95131 1.19782 0.89146 0.99924 0.94525 1.20361 1.12050 1.25444 0.94117 0.95807 1.25592 0.93473 0.95951 1.01403 1.70094 1.09538 1.35863 1.41492 0.86185 0.81131 0.76645 0.80568 1.19383 1.22543 1.16290 1.23061 1.05496 0.95253 0.97960 1.23175 0.99619 0.97184 1.03172 1.20707 0.91993 0.98756 1.13229 0.90089 0.91748 0.90058 0.84543 0.90152 0.90164 0.91647 0.86296 0.92963 0.91418 0.92692 0.92966 0.90441 0.92376 0.92300 0.87142 0.90593 0.88492 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 10.01 71.23 0.71 -1.52 16 2 C -0.04 -1.17 5.88 -19.89 -0.12 -1.29 16 3 C -0.19 -4.94 9.35 22.29 0.21 -4.73 16 4 C -0.04 -1.15 5.88 -19.89 -0.12 -1.26 16 5 C -0.11 -2.08 10.01 71.24 0.71 -1.37 16 6 C -0.23 -7.25 8.82 22.40 0.20 -7.06 16 7 C 0.22 7.75 6.35 38.22 0.24 8.00 16 8 N -0.62 -24.73 2.98 -722.20 -2.15 -26.88 16 9 C 0.10 3.89 9.97 127.77 1.27 5.16 16 10 C 0.16 6.54 4.41 86.38 0.38 6.92 16 11 C -0.03 -1.47 1.32 -52.90 -0.07 -1.54 16 12 C -0.48 -27.26 9.04 25.60 0.23 -27.03 16 13 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 14 C 0.03 1.96 4.55 84.66 0.39 2.34 16 15 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 16 Si 0.93 43.21 24.51 68.60 1.68 44.89 16 17 H -0.27 -11.83 6.70 99.48 0.67 -11.16 16 18 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.24 -10.35 7.07 99.48 0.70 -9.64 16 20 C -0.18 -7.55 9.32 30.59 0.29 -7.27 16 21 C -0.19 -7.83 9.89 30.62 0.30 -7.53 16 22 C -0.22 -7.37 6.51 22.40 0.15 -7.22 16 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 25 H 0.08 1.34 8.09 -2.38 -0.02 1.32 16 26 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.26 8.09 -2.38 -0.02 1.25 16 29 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 30 H 0.12 3.64 6.38 -2.91 -0.02 3.62 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.44 6.64 -2.39 -0.02 2.43 16 33 H 0.05 2.57 6.69 -2.39 -0.02 2.55 16 34 H 0.05 2.33 2.59 -2.38 -0.01 2.32 16 35 H 0.08 2.90 6.20 -2.39 -0.01 2.89 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.11 4.18 4.23 -2.39 -0.01 4.17 16 39 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.10 3.34 8.08 -2.39 -0.02 3.32 16 41 H 0.12 3.96 4.88 -2.91 -0.01 3.95 16 Total: -1.00 -63.77 316.78 5.58 -58.19 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.97 Total: 25.04 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 4.78 Total: -45.39 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.85 Total: -82.73 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.68 Total: 44.89 kcal Total: -63.77 5.58 -58.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.436 kcal (2) G-P(sol) polarization free energy of solvation -63.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds