Wall clock time and date at job start Mon Mar 30 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38308 * 119.92743 * 2 1 4 4 C 1.38084 * 120.07467 * 179.97438 * 3 2 1 5 5 C 1.38928 * 119.92528 * 359.77589 * 4 3 2 6 6 N 1.39676 * 120.07340 * 180.22838 * 5 4 3 7 7 C 1.46903 * 110.99934 * 66.22780 * 6 5 4 8 8 C 1.46896 * 111.00206 * 302.26933 * 6 5 4 9 9 C 1.53001 * 109.47376 * 195.28633 * 8 6 5 10 10 C 1.50696 * 115.54805 * 39.70460 * 9 8 6 11 11 H 1.08002 * 120.00218 * 268.69104 * 10 9 8 12 12 C 1.37874 * 120.00185 * 88.69078 * 10 9 8 13 13 N 1.31518 * 120.00185 * 180.24272 * 12 10 9 14 14 Si 1.86800 * 120.00130 * 0.24536 * 12 10 9 15 15 H 1.48495 * 109.47347 * 91.57657 * 14 12 10 16 16 H 1.48493 * 109.47321 * 211.58074 * 14 12 10 17 17 H 1.48503 * 109.46633 * 331.57992 * 14 12 10 18 18 C 1.52999 * 117.49573 * 253.99895 * 9 8 6 19 19 C 1.52998 * 117.49923 * 185.37469 * 9 8 6 20 20 C 1.38896 * 119.84998 * 0.45498 * 5 4 3 21 21 C 1.50702 * 120.03305 * 179.79447 * 20 5 4 22 22 C 1.38122 * 119.92408 * 359.51938 * 20 5 4 23 23 H 1.08992 * 109.47166 * 270.02237 * 1 2 3 24 24 H 1.09000 * 109.46898 * 30.02605 * 1 2 3 25 25 H 1.09001 * 109.47048 * 150.02272 * 1 2 3 26 26 H 1.07997 * 119.96016 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.03446 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47442 * 54.26432 * 7 6 5 29 29 H 1.09002 * 109.46611 * 174.26538 * 7 6 5 30 30 H 1.09006 * 109.46835 * 294.25999 * 7 6 5 31 31 H 1.09003 * 109.47251 * 315.28529 * 8 6 5 32 32 H 1.08998 * 109.47233 * 75.28039 * 8 6 5 33 33 H 0.97005 * 120.00108 * 180.02562 * 13 12 10 34 34 H 1.08995 * 117.50332 * 359.97438 * 18 9 8 35 35 H 1.08999 * 117.49433 * 145.02404 * 18 9 8 36 36 H 1.08998 * 117.50126 * 214.97959 * 19 9 8 37 37 H 1.09007 * 117.49871 * 359.97438 * 19 9 8 38 38 H 1.08995 * 109.47203 * 265.53181 * 21 20 5 39 39 H 1.09010 * 109.46377 * 145.53523 * 21 20 5 40 40 H 1.08996 * 109.47298 * 25.53731 * 21 20 5 41 41 H 1.08004 * 119.96142 * 180.25070 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5779 1.2022 0.0005 5 6 4.2740 -0.0001 0.0058 6 7 5.6708 -0.0001 0.0112 7 6 6.1924 0.5555 1.2671 8 6 6.2017 0.7296 -1.1479 9 6 7.6842 0.3956 -1.3255 10 6 8.0595 -1.0438 -1.0846 11 1 8.3655 -1.3645 -0.0997 12 6 8.0123 -1.9514 -2.1213 13 7 8.3353 -3.2087 -1.9099 14 14 7.4897 -1.3954 -3.8264 15 1 8.6886 -0.9945 -4.6055 16 1 6.7985 -2.5113 -4.5207 17 1 6.5664 -0.2383 -3.7082 18 6 8.7020 1.4673 -0.9301 19 6 8.4548 1.1551 -2.4073 20 6 3.5779 -1.2020 0.0009 21 6 4.3290 -2.5085 0.0019 22 6 2.1967 -1.1983 0.0009 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6552 2.1329 0.0004 27 1 4.1160 2.1386 0.0010 28 1 5.7590 0.0174 2.1101 29 1 7.2771 0.4505 1.2879 30 1 5.9281 1.6108 1.3350 31 1 5.6536 0.4372 -2.0436 32 1 6.0875 1.8014 -0.9860 33 1 8.3024 -3.8472 -2.6395 34 1 8.3155 2.4104 -0.5438 35 1 9.6434 1.1313 -0.4954 36 1 9.2335 0.6137 -2.9445 37 1 7.9054 1.8924 -2.9929 38 1 4.4449 -2.8618 -1.0227 39 1 3.7729 -3.2467 0.5800 40 1 5.3121 -2.3622 0.4492 41 1 1.6549 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:58 Heat of formation + Delta-G solvation = 57.023826 kcal Electronic energy + Delta-G solvation = -19957.895530 eV Core-core repulsion = 17224.576692 eV Total energy + Delta-G solvation = -2733.318838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.72139 -37.47545 -35.37464 -32.58372 -31.89260 -31.04128 -27.08808 -26.88056 -26.36383 -25.20397 -23.20795 -21.60947 -21.44761 -19.73090 -18.77509 -16.42618 -16.03272 -15.51363 -14.93815 -14.62927 -14.13027 -13.83375 -13.60542 -13.44248 -13.15321 -12.75697 -12.64137 -12.53787 -12.29296 -12.11609 -11.78527 -11.52876 -11.32610 -11.11020 -11.01386 -10.80127 -10.66989 -10.39417 -10.36305 -10.02560 -9.49105 -8.97541 -8.45464 -8.39650 -8.38378 -7.99122 -7.59475 -5.93541 -3.90957 1.60866 1.71388 3.37331 3.47153 3.51325 3.99751 4.45593 4.56265 4.98567 5.04791 5.05628 5.25516 5.34898 5.44775 5.60602 5.63397 5.76574 5.81740 5.86965 5.90697 5.95631 6.04661 6.11611 6.20244 6.22837 6.24257 6.33791 6.45412 6.48533 6.51174 6.63281 6.66886 6.75177 6.83119 6.89718 7.10063 7.15736 7.21781 7.30151 7.66766 7.94036 8.15059 8.67627 9.09865 9.71107 11.19024 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.007224 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.306865 B = 3874.827680 C = 4317.358924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.125 4.125 4 C -0.149 4.149 5 C 0.096 3.904 6 N -0.473 5.473 7 C 0.042 3.958 8 C 0.101 3.899 9 C 0.009 3.991 10 C -0.448 4.448 11 H 0.078 0.922 12 C 0.079 3.921 13 N -0.903 5.903 14 Si 0.874 3.126 15 H -0.284 1.284 16 H -0.298 1.298 17 H -0.262 1.262 18 C -0.186 4.186 19 C -0.204 4.204 20 C -0.051 4.051 21 C -0.106 4.106 22 C -0.122 4.122 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.012 0.988 31 H 0.065 0.935 32 H 0.012 0.988 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 7.307 3.937 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.169 4.169 5 C 0.002 3.998 6 N -0.193 5.193 7 C -0.105 4.105 8 C -0.026 4.026 9 C 0.008 3.992 10 C -0.485 4.485 11 H 0.096 0.904 12 C -0.122 4.122 13 N -0.542 5.542 14 Si 0.704 3.296 15 H -0.211 1.211 16 H -0.225 1.225 17 H -0.187 1.187 18 C -0.223 4.223 19 C -0.241 4.241 20 C -0.052 4.052 21 C -0.163 4.163 22 C -0.141 4.141 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.481 6.631 3.824 13.799 hybrid contribution -0.520 1.204 -1.115 1.721 sum -12.001 7.835 2.708 14.586 Atomic orbital electron populations 1.20722 0.91733 1.02280 1.01796 1.19799 0.95572 0.93238 1.01354 1.20751 0.93828 0.97053 1.02734 1.21708 0.94752 0.98386 1.02055 1.18943 0.89985 0.91812 0.99052 1.59307 1.01889 1.55384 1.02691 1.22311 1.01995 0.95465 0.90718 1.21886 0.96845 0.92095 0.91741 1.19461 0.87859 0.94254 0.97613 1.19994 1.43018 0.88206 0.97313 0.90447 1.24834 0.94562 0.94607 0.98204 1.69885 1.49557 1.02527 1.32198 0.86964 0.79032 0.78164 0.85450 1.21096 1.22519 1.18701 1.22900 1.02603 0.99524 0.97250 1.22952 1.05110 1.04270 0.91812 1.20003 0.92706 0.95575 0.96902 1.20677 1.01363 0.91776 1.02468 1.20853 0.93463 0.97240 1.02540 0.91655 0.92026 0.91851 0.86930 0.86805 0.92482 0.89969 0.96917 0.91681 0.96953 0.93011 0.91462 0.89594 0.89422 0.91316 0.91329 0.93227 0.88730 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.10 -1.37 5.88 -104.59 -0.62 -1.99 16 3 C -0.12 -1.78 9.69 -39.61 -0.38 -2.16 16 4 C -0.15 -2.41 8.75 -39.38 -0.34 -2.75 16 5 C 0.10 1.77 4.59 -83.78 -0.38 1.38 16 6 N -0.47 -9.43 2.89 -178.95 -0.52 -9.95 16 7 C 0.04 0.74 9.13 60.07 0.55 1.29 16 8 C 0.10 2.11 4.37 -3.83 -0.02 2.09 16 9 C 0.01 0.21 0.34 -155.66 -0.05 0.16 16 10 C -0.45 -11.99 8.76 -34.44 -0.30 -12.29 16 11 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 14 Si 0.87 22.01 24.96 -169.99 -4.24 17.77 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 17 H -0.26 -6.34 5.44 56.52 0.31 -6.03 16 18 C -0.19 -3.70 9.64 -26.73 -0.26 -3.96 16 19 C -0.20 -4.34 7.44 -26.73 -0.20 -4.54 16 20 C -0.05 -0.90 5.90 -104.42 -0.62 -1.52 16 21 C -0.11 -1.95 9.82 36.01 0.35 -1.60 16 22 C -0.12 -1.85 9.36 -39.61 -0.37 -2.22 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 25 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.11 1.74 7.30 -52.49 -0.38 1.36 16 28 H 0.06 0.95 8.11 -51.93 -0.42 0.52 16 29 H 0.08 1.54 7.30 -51.93 -0.38 1.16 16 30 H 0.01 0.20 7.61 -51.93 -0.40 -0.19 16 31 H 0.06 1.47 6.49 -51.93 -0.34 1.13 16 32 H 0.01 0.24 7.29 -51.93 -0.38 -0.14 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 35 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.09 1.97 6.99 -51.93 -0.36 1.61 16 37 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.05 0.77 8.11 -51.92 -0.42 0.35 16 40 H 0.09 1.99 7.32 -51.93 -0.38 1.61 16 41 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 326.44 15.07 4.92 4.92 Total: -1.00 -29.04 326.44 -8.35 -37.40 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.91 Total: 2.88 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -2.38 Total: -26.75 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.26 Total: -36.22 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.24 Total: 17.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.04 -8.35 -37.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.421 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds