Wall clock time and date at job start Mon Mar 30 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38308 * 119.92743 * 2 1 4 4 C 1.38084 * 120.07467 * 179.97438 * 3 2 1 5 5 C 1.38928 * 119.92528 * 359.77589 * 4 3 2 6 6 N 1.39676 * 120.07340 * 180.22838 * 5 4 3 7 7 C 1.46903 * 110.99934 * 66.22780 * 6 5 4 8 8 C 1.46896 * 111.00206 * 302.26933 * 6 5 4 9 9 C 1.53001 * 109.47376 * 195.28633 * 8 6 5 10 10 C 1.50696 * 115.54805 * 39.70460 * 9 8 6 11 11 H 1.08002 * 120.00218 * 268.69104 * 10 9 8 12 12 C 1.37874 * 120.00185 * 88.69078 * 10 9 8 13 13 N 1.31518 * 120.00185 * 180.24272 * 12 10 9 14 14 Si 1.86800 * 120.00130 * 0.24536 * 12 10 9 15 15 H 1.48495 * 109.47347 * 91.57657 * 14 12 10 16 16 H 1.48493 * 109.47321 * 211.58074 * 14 12 10 17 17 H 1.48503 * 109.46633 * 331.57992 * 14 12 10 18 18 C 1.52999 * 117.49573 * 253.99895 * 9 8 6 19 19 C 1.52998 * 117.49923 * 185.37469 * 9 8 6 20 20 C 1.38896 * 119.84998 * 0.45498 * 5 4 3 21 21 C 1.50702 * 120.03305 * 179.79447 * 20 5 4 22 22 C 1.38122 * 119.92408 * 359.51938 * 20 5 4 23 23 H 1.08992 * 109.47166 * 270.02237 * 1 2 3 24 24 H 1.09000 * 109.46898 * 30.02605 * 1 2 3 25 25 H 1.09001 * 109.47048 * 150.02272 * 1 2 3 26 26 H 1.07997 * 119.96016 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.03446 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47442 * 54.26432 * 7 6 5 29 29 H 1.09002 * 109.46611 * 174.26538 * 7 6 5 30 30 H 1.09006 * 109.46835 * 294.25999 * 7 6 5 31 31 H 1.09003 * 109.47251 * 315.28529 * 8 6 5 32 32 H 1.08998 * 109.47233 * 75.28039 * 8 6 5 33 33 H 0.97005 * 120.00108 * 180.02562 * 13 12 10 34 34 H 1.08995 * 117.50332 * 359.97438 * 18 9 8 35 35 H 1.08999 * 117.49433 * 145.02404 * 18 9 8 36 36 H 1.08998 * 117.50126 * 214.97959 * 19 9 8 37 37 H 1.09007 * 117.49871 * 359.97438 * 19 9 8 38 38 H 1.08995 * 109.47203 * 265.53181 * 21 20 5 39 39 H 1.09010 * 109.46377 * 145.53523 * 21 20 5 40 40 H 1.08996 * 109.47298 * 25.53731 * 21 20 5 41 41 H 1.08004 * 119.96142 * 180.25070 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5779 1.2022 0.0005 5 6 4.2740 -0.0001 0.0058 6 7 5.6708 -0.0001 0.0112 7 6 6.1924 0.5555 1.2671 8 6 6.2017 0.7296 -1.1479 9 6 7.6842 0.3956 -1.3255 10 6 8.0595 -1.0438 -1.0846 11 1 8.3655 -1.3645 -0.0997 12 6 8.0123 -1.9514 -2.1213 13 7 8.3353 -3.2087 -1.9099 14 14 7.4897 -1.3954 -3.8264 15 1 8.6886 -0.9945 -4.6055 16 1 6.7985 -2.5113 -4.5207 17 1 6.5664 -0.2383 -3.7082 18 6 8.7020 1.4673 -0.9301 19 6 8.4548 1.1551 -2.4073 20 6 3.5779 -1.2020 0.0009 21 6 4.3290 -2.5085 0.0019 22 6 2.1967 -1.1983 0.0009 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6552 2.1329 0.0004 27 1 4.1160 2.1386 0.0010 28 1 5.7590 0.0174 2.1101 29 1 7.2771 0.4505 1.2879 30 1 5.9281 1.6108 1.3350 31 1 5.6536 0.4372 -2.0436 32 1 6.0875 1.8014 -0.9860 33 1 8.3024 -3.8472 -2.6395 34 1 8.3155 2.4104 -0.5438 35 1 9.6434 1.1313 -0.4954 36 1 9.2335 0.6137 -2.9445 37 1 7.9054 1.8924 -2.9929 38 1 4.4449 -2.8618 -1.0227 39 1 3.7729 -3.2467 0.5800 40 1 5.3121 -2.3622 0.4492 41 1 1.6549 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:57 Heat of formation + Delta-G solvation = 42.119146 kcal Electronic energy + Delta-G solvation = -19958.541846 eV Core-core repulsion = 17224.576692 eV Total energy + Delta-G solvation = -2733.965153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01420 -39.03305 -36.82576 -34.07936 -33.81356 -32.17032 -28.69240 -28.04390 -27.78921 -27.11425 -24.49175 -23.27173 -22.76899 -20.95273 -20.63645 -18.19644 -17.54566 -16.84836 -16.76960 -15.82622 -15.78869 -15.22817 -14.91879 -14.80469 -14.65084 -14.45104 -13.95993 -13.87059 -13.79355 -13.42860 -13.21772 -13.03898 -12.82736 -12.71861 -12.32483 -12.28874 -12.06330 -12.00881 -11.97024 -11.78113 -11.44684 -10.86055 -10.49567 -10.17749 -9.63564 -9.23765 -9.00270 -8.12903 -6.11614 0.41884 0.51098 1.34676 1.39435 1.49155 2.45451 2.80042 2.99287 3.22857 3.35649 3.96329 4.05671 4.07222 4.17995 4.29691 4.41616 4.45889 4.46873 4.50709 4.55808 4.64780 4.74747 4.84395 4.85781 4.86890 4.89124 4.92196 4.96859 5.07987 5.12679 5.14046 5.20596 5.37665 5.45388 5.50080 5.59862 5.71775 5.81535 5.83128 6.08318 6.24838 6.50996 6.76859 6.91755 7.52742 9.03466 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.007224 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.306865 B = 3874.827680 C = 4317.358924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.095 4.095 3 C -0.121 4.121 4 C -0.153 4.153 5 C 0.070 3.930 6 N -0.498 5.498 7 C 0.049 3.951 8 C 0.113 3.887 9 C -0.019 4.019 10 C -0.429 4.429 11 H 0.034 0.966 12 C 0.025 3.975 13 N -0.952 5.952 14 Si 0.926 3.074 15 H -0.277 1.277 16 H -0.308 1.308 17 H -0.243 1.243 18 C -0.162 4.162 19 C -0.202 4.202 20 C -0.077 4.077 21 C -0.095 4.095 22 C -0.125 4.125 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.144 0.856 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.257 0.743 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 10.222 3.701 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.173 4.173 5 C -0.024 4.024 6 N -0.218 5.218 7 C -0.098 4.098 8 C -0.013 4.013 9 C -0.020 4.020 10 C -0.467 4.467 11 H 0.052 0.948 12 C -0.171 4.171 13 N -0.594 5.594 14 Si 0.754 3.246 15 H -0.203 1.203 16 H -0.236 1.236 17 H -0.166 1.166 18 C -0.199 4.199 19 C -0.240 4.240 20 C -0.078 4.078 21 C -0.152 4.152 22 C -0.143 4.143 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.162 0.838 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.111 9.579 3.598 17.431 hybrid contribution 0.261 0.297 -0.912 0.994 sum -13.850 9.876 2.685 17.222 Atomic orbital electron populations 1.20792 0.88791 1.03581 1.03153 1.20245 0.97665 0.92433 0.99160 1.21135 0.93175 0.98588 1.01072 1.21795 0.95757 0.97666 1.02073 1.19032 0.89156 0.92985 1.01249 1.59144 1.03522 1.56143 1.02977 1.22218 1.00663 0.96720 0.90168 1.21647 0.94703 0.93460 0.91525 1.19404 0.89816 0.92405 1.00359 1.20062 1.40892 0.90749 0.95033 0.94795 1.25506 0.95281 0.94555 1.01767 1.70031 1.52367 1.03889 1.33113 0.86112 0.79110 0.78002 0.81378 1.20305 1.23583 1.16643 1.22908 1.01143 0.99562 0.96279 1.22983 1.04359 1.04155 0.92468 1.20063 0.94012 0.94749 0.99020 1.20478 1.00151 0.93616 1.00945 1.21084 0.92376 0.98961 1.01885 0.90113 0.90429 0.90958 0.83845 0.85906 0.92240 0.91867 0.94707 0.93743 0.94485 0.93376 0.88092 0.90386 0.91020 0.88650 0.93714 0.90864 0.92365 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.24 0.71 -0.99 16 2 C -0.09 -2.29 5.88 -19.84 -0.12 -2.41 16 3 C -0.12 -2.99 9.69 22.25 0.22 -2.78 16 4 C -0.15 -4.55 8.75 22.40 0.20 -4.36 16 5 C 0.07 2.50 4.59 38.21 0.18 2.68 16 6 N -0.50 -19.90 2.89 -720.07 -2.08 -21.98 16 7 C 0.05 1.71 9.13 127.69 1.17 2.88 16 8 C 0.11 4.60 4.37 86.30 0.38 4.98 16 9 C -0.02 -0.83 0.34 -52.93 -0.02 -0.85 16 10 C -0.43 -23.85 8.76 25.60 0.22 -23.62 16 11 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 12 C 0.02 1.43 5.47 84.65 0.46 1.89 16 13 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 14 Si 0.93 46.16 24.96 68.60 1.71 47.87 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 16 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 17 H -0.24 -11.24 5.44 99.48 0.54 -10.70 16 18 C -0.16 -6.13 9.64 30.60 0.29 -5.83 16 19 C -0.20 -8.17 7.44 30.59 0.23 -7.94 16 20 C -0.08 -2.73 5.90 -19.73 -0.12 -2.85 16 21 C -0.10 -3.66 9.82 71.24 0.70 -2.96 16 22 C -0.12 -3.53 9.36 22.25 0.21 -3.32 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 25 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 26 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.12 3.36 7.30 -2.91 -0.02 3.33 16 28 H 0.06 2.00 8.11 -2.39 -0.02 1.98 16 29 H 0.06 2.41 7.30 -2.39 -0.02 2.39 16 30 H 0.03 1.04 7.61 -2.38 -0.02 1.03 16 31 H 0.04 1.96 6.49 -2.39 -0.02 1.94 16 32 H 0.04 1.31 7.29 -2.39 -0.02 1.29 16 33 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 34 H 0.10 3.17 8.08 -2.39 -0.02 3.15 16 35 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.07 3.13 6.99 -2.39 -0.02 3.11 16 37 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.34 8.11 -2.38 -0.02 2.32 16 40 H 0.06 2.62 7.32 -2.39 -0.02 2.61 16 41 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -65.86 326.44 5.46 -60.41 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.82 Total: 18.88 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 4.71 Total: -45.48 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -1.78 Total: -81.68 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.71 Total: 47.87 kcal Total: -65.86 5.46 -60.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.526 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds