Wall clock time and date at job start Mon Mar 30 2020 07:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 H 1.08995 * 109.47586 * 175.10618 * 3 2 1 5 5 C 1.50700 * 109.47085 * 55.10143 * 3 2 1 6 6 H 1.07996 * 120.00226 * 267.91289 * 5 3 2 7 7 C 1.37873 * 119.99674 * 87.64379 * 5 3 2 8 8 N 1.31516 * 119.99995 * 187.71025 * 7 5 3 9 9 Si 1.86800 * 120.00229 * 7.70682 * 7 5 3 10 10 H 1.48496 * 109.47323 * 90.98239 * 9 7 5 11 11 H 1.48501 * 109.47409 * 210.98545 * 9 7 5 12 12 H 1.48502 * 109.46965 * 330.98329 * 9 7 5 13 13 N 1.46907 * 109.46952 * 295.10390 * 3 2 1 14 14 C 1.46813 * 110.99906 * 203.74833 * 13 3 2 15 15 C 1.51721 * 111.14978 * 35.61894 * 14 13 3 16 16 C 1.51768 * 113.89260 * 67.49265 * 15 14 13 17 17 C 1.53172 * 110.63578 * 293.16818 * 16 15 14 18 18 C 1.51476 * 108.23492 * 83.20794 * 17 16 15 19 19 C 1.38150 * 119.73880 * 110.57765 * 18 17 16 20 20 C 1.38378 * 119.65465 * 179.97438 * 19 18 17 21 21 C 1.38317 * 120.13983 * 359.97438 * 20 19 18 22 22 C 1.38130 * 120.19856 * 359.97438 * 21 20 19 23 23 C 1.37781 * 119.81686 * 290.53188 * 18 17 16 24 24 H 1.08998 * 109.47124 * 184.27050 * 1 2 3 25 25 H 1.08993 * 109.47131 * 304.27081 * 1 2 3 26 26 H 1.09004 * 109.47457 * 64.27126 * 1 2 3 27 27 H 1.09001 * 109.47267 * 239.99966 * 2 1 3 28 28 H 1.08996 * 109.47037 * 120.00181 * 2 1 3 29 29 H 0.97008 * 120.00016 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.14337 * 156.04912 * 14 13 3 31 31 H 1.09000 * 109.14671 * 275.24510 * 14 13 3 32 32 H 1.08998 * 108.59887 * 188.63613 * 15 14 13 33 33 H 1.09006 * 108.59651 * 306.35790 * 15 14 13 34 34 H 1.09005 * 109.24561 * 53.45996 * 16 15 14 35 35 H 1.08995 * 109.24448 * 172.86410 * 16 15 14 36 36 H 1.09004 * 109.70660 * 202.89840 * 17 16 15 37 37 H 1.09001 * 109.70420 * 323.47671 * 17 16 15 38 38 H 1.08002 * 120.17531 * 359.97438 * 19 18 17 39 39 H 1.07993 * 119.92922 * 179.97438 * 20 19 18 40 40 H 1.07996 * 119.89635 * 180.02562 * 21 20 19 41 41 H 1.07995 * 120.20294 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0877 5 6 1.4410 2.1870 1.1653 6 1 0.5205 2.7375 1.0388 7 6 2.0654 2.1609 2.3943 8 7 1.4698 2.6804 3.4456 9 14 3.7571 1.3876 2.5664 10 1 4.7990 2.4254 2.3601 11 1 3.8997 0.8061 3.9253 12 1 3.9173 0.3165 1.5504 13 7 1.6492 2.1000 -1.2542 14 6 2.5420 3.2249 -1.5589 15 6 3.9667 2.9242 -1.1325 16 6 4.6299 1.8223 -1.9383 17 6 3.9500 0.4756 -1.6733 18 6 2.7273 0.3789 -2.5622 19 6 2.7123 -0.5194 -3.6116 20 6 1.5942 -0.6066 -4.4222 21 6 0.4975 0.2013 -4.1821 22 6 0.5122 1.0986 -3.1321 23 6 1.6376 1.1861 -2.3185 24 1 -0.3633 -1.0248 0.0765 25 1 -0.3633 0.5786 0.8492 26 1 -0.3634 0.4461 -0.9258 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.9093 2.6623 4.3102 30 1 2.5229 3.4160 -2.6319 31 1 2.1918 4.1123 -1.0317 32 1 4.5591 3.8335 -1.2334 33 1 3.9607 2.6315 -0.0824 34 1 4.5561 2.0593 -2.9997 35 1 5.6811 1.7554 -1.6582 36 1 4.6391 -0.3362 -1.9062 37 1 3.6505 0.4147 -0.6270 38 1 3.5687 -1.1503 -3.7985 39 1 1.5778 -1.3070 -5.2441 40 1 -0.3732 0.1296 -4.8169 41 1 -0.3442 1.7292 -2.9442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088333595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:17 Heat of formation + Delta-G solvation = 59.533252 kcal Electronic energy + Delta-G solvation = -21167.691834 eV Core-core repulsion = 18434.481813 eV Total energy + Delta-G solvation = -2733.210021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87321 -37.06362 -34.24458 -32.88748 -31.99335 -30.71300 -29.63806 -27.44558 -25.66409 -24.00239 -23.46858 -21.81008 -20.87656 -20.03556 -18.67566 -16.98974 -16.12827 -15.43613 -15.34892 -14.85623 -14.38118 -13.94507 -13.67245 -13.38817 -13.06711 -12.79603 -12.52518 -12.40858 -12.09965 -11.92338 -11.72132 -11.29467 -11.14551 -10.99756 -10.65899 -10.58123 -10.32905 -10.22157 -10.19213 -10.06801 -9.67432 -9.35277 -9.14729 -8.52340 -8.34725 -7.94697 -7.33450 -6.08150 -4.02919 1.74887 1.79059 3.19526 3.26577 3.31228 4.13525 4.36138 4.69563 5.02736 5.14173 5.24423 5.30023 5.36012 5.39611 5.48168 5.70374 5.85719 5.92336 5.93098 6.03982 6.12664 6.20482 6.25180 6.27244 6.31290 6.38385 6.41182 6.51642 6.59938 6.68730 6.79709 6.84368 6.87319 7.00201 7.05494 7.11918 7.14370 7.33312 7.47858 7.72389 7.91724 8.24737 8.69927 9.06223 9.55667 11.05269 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.009345 C = 0.008315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.114473 B = 2995.660250 C = 3366.633507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.046 0.954 5 C -0.484 4.484 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.853 3.147 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.263 1.263 13 N -0.484 5.484 14 C 0.075 3.925 15 C -0.168 4.168 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.103 4.103 23 C 0.121 3.879 24 H 0.021 0.979 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -4.213 -12.943 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.171 4.171 3 C 0.055 3.945 4 H 0.063 0.937 5 C -0.522 4.522 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.680 3.320 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.188 1.188 13 N -0.204 5.204 14 C -0.051 4.051 15 C -0.206 4.206 16 C -0.147 4.147 17 C -0.158 4.158 18 C -0.107 4.107 19 C -0.138 4.138 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.122 4.122 23 C 0.027 3.973 24 H 0.040 0.960 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.267 -3.953 -12.639 13.640 hybrid contribution 1.771 -0.843 0.190 1.971 sum 5.038 -4.796 -12.449 14.261 Atomic orbital electron populations 1.21578 0.95818 0.98547 1.02798 1.22145 0.97406 0.98175 0.99330 1.20441 0.95852 0.91054 0.87137 0.93741 1.20841 1.09944 1.30414 0.91038 0.90002 1.24910 0.96944 0.95162 0.95898 1.69886 1.37654 1.46251 0.99687 0.87278 0.86436 0.80366 0.77874 1.20131 1.21239 1.18752 1.60706 1.50681 1.08089 1.00959 1.21669 0.89238 0.95004 0.99237 1.21809 0.97864 0.98467 1.02474 1.21278 0.98747 0.94481 1.00153 1.21659 0.94450 0.97487 1.02182 1.20398 0.95982 0.97750 0.96577 1.20905 0.98217 0.98995 0.95677 1.20970 0.94164 1.00344 1.00086 1.20979 0.98225 0.97025 0.98228 1.21133 0.97651 0.98816 0.94610 1.18893 0.92079 0.93855 0.92466 0.96021 0.90977 0.93199 0.93691 0.93281 0.92722 0.92800 0.90001 0.92125 0.89916 0.92358 0.92238 0.91883 0.87163 0.86932 0.86968 0.86675 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.43 37.16 0.35 -2.40 16 2 C -0.13 -2.87 4.13 -26.73 -0.11 -2.98 16 3 C 0.16 3.58 0.24 -68.86 -0.02 3.57 16 4 H 0.05 1.01 0.37 -51.93 -0.02 0.99 16 5 C -0.48 -12.89 7.45 -34.44 -0.26 -13.15 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 9 Si 0.85 20.53 25.56 -169.99 -4.34 16.18 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.26 -5.97 5.64 56.52 0.32 -5.65 16 13 N -0.48 -9.84 4.32 -165.79 -0.72 -10.55 16 14 C 0.08 1.39 5.74 -4.52 -0.03 1.37 16 15 C -0.17 -2.96 5.18 -28.00 -0.14 -3.11 16 16 C -0.11 -1.73 5.67 -27.27 -0.15 -1.88 16 17 C -0.12 -2.07 5.09 -27.41 -0.14 -2.21 16 18 C -0.10 -1.79 3.11 -104.44 -0.32 -2.11 16 19 C -0.12 -1.78 9.69 -39.56 -0.38 -2.16 16 20 C -0.14 -1.89 10.05 -39.50 -0.40 -2.28 16 21 C -0.13 -1.79 10.03 -39.59 -0.40 -2.18 16 22 C -0.10 -1.70 8.53 -39.29 -0.33 -2.04 16 23 C 0.12 2.21 2.54 -83.82 -0.21 2.00 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 1.70 6.91 -51.93 -0.36 1.34 16 26 H 0.05 1.01 5.76 -51.93 -0.30 0.71 16 27 H 0.04 0.92 4.52 -51.93 -0.23 0.68 16 28 H 0.05 1.11 7.22 -51.93 -0.38 0.73 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.05 0.90 7.76 -51.93 -0.40 0.50 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.70 4.42 -51.93 -0.23 1.47 16 34 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.11 2.19 2.87 -51.93 -0.15 2.04 16 38 H 0.11 1.45 7.98 -52.49 -0.42 1.03 16 39 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 292.75 15.07 4.41 4.41 Total: -1.00 -28.40 292.75 -8.43 -36.83 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.91 Total: 6.62 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -2.65 Total: -27.67 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.06 Total: -36.37 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.34 Total: 16.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.40 -8.43 -36.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088333595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.359 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds