Wall clock time and date at job start Mon Mar 30 2020 07:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 H 1.08995 * 109.47586 * 175.10618 * 3 2 1 5 5 C 1.50700 * 109.47085 * 55.10143 * 3 2 1 6 6 H 1.07996 * 120.00226 * 267.91289 * 5 3 2 7 7 C 1.37873 * 119.99674 * 87.64379 * 5 3 2 8 8 N 1.31516 * 119.99995 * 187.71025 * 7 5 3 9 9 Si 1.86800 * 120.00229 * 7.70682 * 7 5 3 10 10 H 1.48496 * 109.47323 * 90.98239 * 9 7 5 11 11 H 1.48501 * 109.47409 * 210.98545 * 9 7 5 12 12 H 1.48502 * 109.46965 * 330.98329 * 9 7 5 13 13 N 1.46907 * 109.46952 * 295.10390 * 3 2 1 14 14 C 1.46813 * 110.99906 * 203.74833 * 13 3 2 15 15 C 1.51721 * 111.14978 * 35.61894 * 14 13 3 16 16 C 1.51768 * 113.89260 * 67.49265 * 15 14 13 17 17 C 1.53172 * 110.63578 * 293.16818 * 16 15 14 18 18 C 1.51476 * 108.23492 * 83.20794 * 17 16 15 19 19 C 1.38150 * 119.73880 * 110.57765 * 18 17 16 20 20 C 1.38378 * 119.65465 * 179.97438 * 19 18 17 21 21 C 1.38317 * 120.13983 * 359.97438 * 20 19 18 22 22 C 1.38130 * 120.19856 * 359.97438 * 21 20 19 23 23 C 1.37781 * 119.81686 * 290.53188 * 18 17 16 24 24 H 1.08998 * 109.47124 * 184.27050 * 1 2 3 25 25 H 1.08993 * 109.47131 * 304.27081 * 1 2 3 26 26 H 1.09004 * 109.47457 * 64.27126 * 1 2 3 27 27 H 1.09001 * 109.47267 * 239.99966 * 2 1 3 28 28 H 1.08996 * 109.47037 * 120.00181 * 2 1 3 29 29 H 0.97008 * 120.00016 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.14337 * 156.04912 * 14 13 3 31 31 H 1.09000 * 109.14671 * 275.24510 * 14 13 3 32 32 H 1.08998 * 108.59887 * 188.63613 * 15 14 13 33 33 H 1.09006 * 108.59651 * 306.35790 * 15 14 13 34 34 H 1.09005 * 109.24561 * 53.45996 * 16 15 14 35 35 H 1.08995 * 109.24448 * 172.86410 * 16 15 14 36 36 H 1.09004 * 109.70660 * 202.89840 * 17 16 15 37 37 H 1.09001 * 109.70420 * 323.47671 * 17 16 15 38 38 H 1.08002 * 120.17531 * 359.97438 * 19 18 17 39 39 H 1.07993 * 119.92922 * 179.97438 * 20 19 18 40 40 H 1.07996 * 119.89635 * 180.02562 * 21 20 19 41 41 H 1.07995 * 120.20294 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0877 5 6 1.4410 2.1870 1.1653 6 1 0.5205 2.7375 1.0388 7 6 2.0654 2.1609 2.3943 8 7 1.4698 2.6804 3.4456 9 14 3.7571 1.3876 2.5664 10 1 4.7990 2.4254 2.3601 11 1 3.8997 0.8061 3.9253 12 1 3.9173 0.3165 1.5504 13 7 1.6492 2.1000 -1.2542 14 6 2.5420 3.2249 -1.5589 15 6 3.9667 2.9242 -1.1325 16 6 4.6299 1.8223 -1.9383 17 6 3.9500 0.4756 -1.6733 18 6 2.7273 0.3789 -2.5622 19 6 2.7123 -0.5194 -3.6116 20 6 1.5942 -0.6066 -4.4222 21 6 0.4975 0.2013 -4.1821 22 6 0.5122 1.0986 -3.1321 23 6 1.6376 1.1861 -2.3185 24 1 -0.3633 -1.0248 0.0765 25 1 -0.3633 0.5786 0.8492 26 1 -0.3634 0.4461 -0.9258 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.9093 2.6623 4.3102 30 1 2.5229 3.4160 -2.6319 31 1 2.1918 4.1123 -1.0317 32 1 4.5591 3.8335 -1.2334 33 1 3.9607 2.6315 -0.0824 34 1 4.5561 2.0593 -2.9997 35 1 5.6811 1.7554 -1.6582 36 1 4.6391 -0.3362 -1.9062 37 1 3.6505 0.4147 -0.6270 38 1 3.5687 -1.1503 -3.7985 39 1 1.5778 -1.3070 -5.2441 40 1 -0.3732 0.1296 -4.8169 41 1 -0.3442 1.7292 -2.9442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088333595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:16 Heat of formation + Delta-G solvation = 43.087264 kcal Electronic energy + Delta-G solvation = -21168.404985 eV Core-core repulsion = 18434.481813 eV Total energy + Delta-G solvation = -2733.923173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26029 -38.35051 -35.79677 -34.52858 -33.76154 -32.12897 -30.89388 -29.15435 -27.21742 -25.30579 -25.23772 -23.09238 -22.41553 -21.32104 -20.27774 -18.77949 -17.50990 -17.10752 -16.83213 -16.20889 -15.66463 -15.64377 -15.05107 -14.81246 -14.74225 -14.36487 -14.07308 -13.75905 -13.60128 -13.37088 -13.04821 -12.86210 -12.69922 -12.61206 -12.33282 -12.07242 -11.97034 -11.74868 -11.67160 -11.48285 -11.43969 -11.03349 -10.97389 -10.55015 -9.54693 -9.22805 -8.86937 -8.23653 -6.21619 0.56808 0.61273 1.27650 1.29790 1.37704 2.32651 2.95910 3.06313 3.30751 3.79108 3.91011 4.06296 4.14869 4.21394 4.35270 4.37487 4.45743 4.49511 4.56794 4.66723 4.69588 4.77489 4.79786 4.93434 4.95571 5.05931 5.06371 5.12438 5.17289 5.22710 5.30041 5.33452 5.39755 5.52619 5.64900 5.65266 5.72481 5.77610 5.86302 6.14413 6.18907 6.55092 6.83656 6.96728 7.40916 8.93850 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.009345 C = 0.008315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.114473 B = 2995.660250 C = 3366.633507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C 0.168 3.832 4 H 0.057 0.943 5 C -0.474 4.474 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.912 3.088 10 H -0.265 1.265 11 H -0.290 1.290 12 H -0.239 1.239 13 N -0.502 5.502 14 C 0.074 3.926 15 C -0.166 4.166 16 C -0.104 4.104 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.120 4.120 23 C 0.096 3.904 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -6.504 -16.181 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 C 0.062 3.938 4 H 0.074 0.926 5 C -0.513 4.513 6 H 0.049 0.951 7 C -0.182 4.182 8 N -0.590 5.590 9 Si 0.737 3.263 10 H -0.190 1.190 11 H -0.217 1.217 12 H -0.162 1.162 13 N -0.222 5.222 14 C -0.053 4.053 15 C -0.205 4.205 16 C -0.141 4.141 17 C -0.160 4.160 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.139 4.139 23 C 0.002 3.998 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.230 -6.249 -15.913 17.879 hybrid contribution 1.019 -0.097 1.055 1.470 sum 6.249 -6.346 -14.858 17.323 Atomic orbital electron populations 1.21473 0.95863 0.99239 1.01408 1.22083 0.97331 0.97650 0.99620 1.20242 0.96139 0.90751 0.86670 0.92608 1.21006 1.07952 1.29328 0.93021 0.95095 1.25668 1.00925 0.96116 0.95473 1.70054 1.39696 1.48955 1.00323 0.86307 0.81666 0.80345 0.78015 1.19028 1.21670 1.16243 1.60417 1.51488 1.09090 1.01217 1.21666 0.89856 0.93819 0.99936 1.21784 0.97553 1.00330 1.00814 1.21259 0.99368 0.93005 1.00466 1.21625 0.95160 0.98981 1.00242 1.20450 0.95541 0.98413 0.97702 1.21232 0.99474 0.98244 0.94651 1.21399 0.93107 0.99907 1.00264 1.21299 0.99525 0.95750 0.97288 1.21221 0.97081 0.99867 0.95701 1.18920 0.93591 0.94670 0.92625 0.93800 0.94697 0.92622 0.91517 0.94589 0.92895 0.91005 0.92379 0.90277 0.93047 0.90990 0.90259 0.89372 0.90289 0.84336 0.83480 0.83921 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 9.43 71.98 0.68 -4.56 16 2 C -0.13 -5.54 4.13 30.59 0.13 -5.42 16 3 C 0.17 7.60 0.24 44.17 0.01 7.61 16 4 H 0.06 2.48 0.37 -2.39 0.00 2.48 16 5 C -0.47 -26.65 7.45 25.60 0.19 -26.46 16 6 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.84 5.47 84.65 0.46 1.31 16 8 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 9 Si 0.91 43.13 25.56 68.60 1.75 44.88 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.24 -10.29 5.64 99.48 0.56 -9.73 16 13 N -0.50 -20.59 4.32 -678.45 -2.93 -23.52 16 14 C 0.07 2.75 5.74 85.90 0.49 3.24 16 15 C -0.17 -5.66 5.18 29.77 0.15 -5.51 16 16 C -0.10 -2.94 5.67 30.25 0.17 -2.76 16 17 C -0.12 -3.79 5.09 30.15 0.15 -3.63 16 18 C -0.12 -3.67 3.11 -19.75 -0.06 -3.73 16 19 C -0.12 -2.92 9.69 22.28 0.22 -2.70 16 20 C -0.13 -2.86 10.05 22.32 0.22 -2.63 16 21 C -0.12 -2.94 10.03 22.26 0.22 -2.72 16 22 C -0.12 -3.75 8.53 22.46 0.19 -3.56 16 23 C 0.10 3.34 2.54 37.90 0.10 3.43 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.71 6.91 -2.39 -0.02 1.70 16 26 H 0.05 2.28 5.76 -2.38 -0.01 2.26 16 27 H 0.07 2.60 4.52 -2.39 -0.01 2.59 16 28 H 0.04 1.60 7.22 -2.39 -0.02 1.59 16 29 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 30 H 0.07 2.36 7.76 -2.39 -0.02 2.34 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.08 4.42 -2.38 -0.01 2.07 16 34 H 0.07 1.86 7.88 -2.38 -0.02 1.84 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 2.22 7.92 -2.39 -0.02 2.20 16 37 H 0.08 2.94 2.87 -2.39 -0.01 2.93 16 38 H 0.14 2.72 7.98 -2.91 -0.02 2.69 16 39 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -65.11 292.75 3.33 -61.78 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.88 Total: 24.02 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 3.33 Total: -48.08 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.63 Total: -82.60 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.75 Total: 44.88 kcal Total: -65.11 3.33 -61.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088333595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.870 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds