Wall clock time and date at job start Mon Mar 30 2020 07:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47584 * 2 1 4 4 N 1.46905 * 109.46659 * 120.00005 * 2 1 3 5 5 C 1.46903 * 110.99948 * 294.94450 * 4 2 1 6 6 C 1.50703 * 109.46747 * 160.32423 * 5 4 2 7 7 H 1.07998 * 120.00112 * 4.04036 * 6 5 4 8 8 C 1.37874 * 119.99423 * 184.03316 * 6 5 4 9 9 N 1.31509 * 120.00793 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99708 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47234 * 89.99857 * 10 8 6 12 12 H 1.48495 * 109.47120 * 210.00344 * 10 8 6 13 13 H 1.48504 * 109.47076 * 330.00045 * 10 8 6 14 14 C 1.46909 * 110.99815 * 170.99618 * 4 2 1 15 15 C 1.53001 * 109.46860 * 293.95130 * 14 4 2 16 16 H 1.09000 * 112.50755 * 45.33652 * 15 14 4 17 17 C 1.52880 * 113.21757 * 175.21229 * 15 14 4 18 18 C 1.51423 * 84.73647 * 115.23407 * 17 15 14 19 19 C 1.38944 * 145.53501 * 180.02562 * 18 17 15 20 20 C 1.37971 * 120.32644 * 180.02562 * 19 18 17 21 21 C 1.38246 * 120.17721 * 359.97438 * 20 19 18 22 22 C 1.38174 * 119.74555 * 0.02562 * 21 20 19 23 23 C 1.38231 * 120.12856 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47260 * 306.06291 * 1 2 3 25 25 H 1.09008 * 109.46628 * 66.05552 * 1 2 3 26 26 H 1.08993 * 109.47608 * 186.05681 * 1 2 3 27 27 H 1.09002 * 109.47333 * 239.99676 * 2 1 3 28 28 H 1.08993 * 109.47372 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46785 * 299.99680 * 3 2 1 30 30 H 1.09002 * 109.47050 * 59.99502 * 3 2 1 31 31 H 1.09000 * 109.47229 * 280.32641 * 5 4 2 32 32 H 1.09001 * 109.46834 * 40.32758 * 5 4 2 33 33 H 0.96992 * 120.00930 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.46943 * 173.95554 * 14 4 2 35 35 H 1.09001 * 109.46790 * 53.95081 * 14 4 2 36 36 H 1.09005 * 113.98987 * 229.18048 * 17 15 14 37 37 H 1.09000 * 113.99196 * 1.28421 * 17 15 14 38 38 H 1.08000 * 119.83510 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.91161 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.12334 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.93490 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 1.6496 0.0398 2.4181 6 6 1.7211 -0.8884 3.6031 7 1 2.0746 -1.9009 3.4755 8 6 1.3352 -0.4449 4.8503 9 7 0.9044 0.7879 5.0057 10 14 1.4245 -1.5952 6.3194 11 1 2.7575 -1.4744 6.9625 12 1 0.3681 -1.2315 7.2977 13 1 1.2186 -2.9943 5.8659 14 6 3.4721 -0.9009 1.1311 15 6 3.7950 -1.8714 -0.0068 16 1 3.2512 -1.6371 -0.9220 17 6 5.2956 -2.0601 -0.2304 18 6 5.0377 -3.4901 0.1954 19 6 5.6053 -4.7378 0.4227 20 6 4.8225 -5.7930 0.8440 21 6 3.4661 -5.6156 1.0437 22 6 2.8963 -4.3771 0.8192 23 6 3.6795 -3.3192 0.3971 24 1 -0.3634 0.6050 0.8307 25 1 -0.3633 0.4171 -0.9393 26 1 -0.3634 -1.0218 0.1084 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.3389 0.8713 2.5656 32 1 0.6342 0.4231 2.3174 33 1 0.6326 1.0998 5.8830 34 1 3.8243 -1.3174 2.0747 35 1 3.9676 0.0524 0.9472 36 1 5.6052 -1.9563 -1.2704 37 1 5.9212 -1.4973 0.4624 38 1 6.6643 -4.8825 0.2680 39 1 5.2707 -6.7600 1.0183 40 1 2.8543 -6.4421 1.3739 41 1 1.8368 -4.2352 0.9739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090976993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:18 Heat of formation + Delta-G solvation = 61.367837 kcal Electronic energy + Delta-G solvation = -19643.004457 eV Core-core repulsion = 16909.873990 eV Total energy + Delta-G solvation = -2733.130467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34979 -37.67296 -35.22389 -32.73834 -31.00518 -30.34141 -28.22418 -26.71676 -26.45184 -24.91989 -22.83551 -22.30853 -21.02636 -19.64302 -18.27554 -16.61023 -16.31935 -15.42061 -14.87081 -14.62547 -14.50919 -14.10296 -13.81972 -13.19634 -13.02942 -12.77506 -12.71187 -12.24028 -11.96697 -11.91223 -11.67827 -11.44813 -11.25326 -10.97171 -10.84036 -10.76605 -10.58278 -10.47938 -10.37508 -10.17229 -9.72584 -9.47998 -9.15494 -8.49720 -8.37349 -8.26688 -7.12806 -5.97332 -3.97288 1.61681 1.72361 3.34496 3.40664 3.45880 4.06632 4.46002 4.47449 4.69757 4.75215 5.18703 5.26651 5.33640 5.38384 5.40627 5.53605 5.66868 5.72654 5.84913 5.87512 5.94966 6.00591 6.08155 6.14150 6.18068 6.24291 6.37550 6.40402 6.47514 6.50677 6.66207 6.76830 6.80978 6.81421 6.88013 7.14102 7.31655 7.34525 7.42052 7.89043 8.19318 8.29129 8.63299 9.11132 9.66492 11.13165 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.007691 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.995821 B = 3639.895560 C = 4941.638545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 C -0.184 4.184 4 N -0.525 5.525 5 C 0.191 3.809 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.076 3.924 15 C -0.040 4.040 16 H 0.089 0.911 17 C -0.074 4.074 18 C -0.141 4.141 19 C -0.105 4.105 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.080 4.080 23 C -0.090 4.090 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.063 0.937 31 H -0.011 1.011 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -6.363 -11.556 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 C -0.243 4.243 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.053 4.053 15 C -0.059 4.059 16 H 0.107 0.893 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.123 4.123 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.098 4.098 23 C -0.090 4.090 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.007 0.993 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.925 -6.720 -11.378 14.482 hybrid contribution 0.412 0.181 1.004 1.100 sum 6.337 -6.538 -10.374 13.803 Atomic orbital electron populations 1.21801 0.95023 1.02316 1.00525 1.21674 0.95593 0.91813 0.94570 1.22475 1.00860 0.99117 1.01864 1.62329 1.10736 1.49186 1.02649 1.19766 0.96136 0.92219 0.85228 1.21204 1.42245 0.98655 0.91762 0.92037 1.24953 0.95630 0.95135 0.98877 1.69944 1.44850 1.15939 1.23393 0.86580 0.77545 0.81333 0.82481 1.20863 1.21348 1.19799 1.21893 0.90156 0.95654 0.97578 1.21347 0.94164 0.90884 0.99481 0.89256 1.21803 0.97069 0.90844 1.01446 1.22399 0.96484 0.94722 1.00499 1.20426 0.99230 0.91767 1.00887 1.20840 0.94137 0.98285 1.01485 1.20993 0.95063 0.96937 1.00914 1.20316 1.00367 0.91099 0.97994 1.21586 0.94552 0.95748 0.97148 0.92079 0.93758 0.92201 0.91572 0.93211 0.93440 0.91755 0.99284 0.94402 0.93073 0.89954 0.95253 0.89448 0.89021 0.87218 0.86437 0.86075 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.00 37.15 0.33 -2.04 16 2 C 0.07 1.27 2.80 -67.71 -0.19 1.08 16 3 C -0.18 -3.07 8.54 37.16 0.32 -2.75 16 4 N -0.53 -10.93 4.38 -228.07 -1.00 -11.92 16 5 C 0.19 4.86 3.38 -4.97 -0.02 4.84 16 6 C -0.50 -14.04 8.60 -34.44 -0.30 -14.34 16 7 H 0.06 1.75 7.68 -52.49 -0.40 1.35 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.08 1.43 4.35 -3.82 -0.02 1.41 16 15 C -0.04 -0.63 3.70 -95.44 -0.35 -0.99 16 16 H 0.09 1.33 6.15 -51.93 -0.32 1.01 16 17 C -0.07 -0.98 8.01 -27.59 -0.22 -1.20 16 18 C -0.14 -2.14 7.32 -107.59 -0.79 -2.93 16 19 C -0.11 -1.46 10.05 -39.42 -0.40 -1.86 16 20 C -0.13 -1.74 10.03 -39.68 -0.40 -2.13 16 21 C -0.12 -1.75 10.06 -39.60 -0.40 -2.14 16 22 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 23 C -0.09 -1.52 7.00 -104.55 -0.73 -2.25 16 24 H 0.06 1.16 6.47 -51.93 -0.34 0.83 16 25 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.05 6.01 -51.93 -0.31 0.74 16 28 H 0.05 0.80 6.54 -51.93 -0.34 0.46 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.22 6.79 -51.93 -0.35 0.87 16 31 H -0.01 -0.29 7.32 -51.93 -0.38 -0.67 16 32 H 0.04 1.03 5.92 -51.93 -0.31 0.72 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.78 7.22 -51.93 -0.38 1.41 16 35 H 0.03 0.53 6.35 -51.93 -0.33 0.20 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.16 7.99 -51.93 -0.42 0.75 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.12 2.07 8.06 -52.48 -0.42 1.64 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -30.01 324.38 -10.43 -40.44 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.39 Total: 1.23 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -3.65 Total: -25.56 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.26 Total: -37.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.01 -10.43 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090976993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.805 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds