Wall clock time and date at job start Mon Mar 30 2020 07:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47584 * 2 1 4 4 N 1.46905 * 109.46659 * 120.00005 * 2 1 3 5 5 C 1.46903 * 110.99948 * 294.94450 * 4 2 1 6 6 C 1.50703 * 109.46747 * 160.32423 * 5 4 2 7 7 H 1.07998 * 120.00112 * 4.04036 * 6 5 4 8 8 C 1.37874 * 119.99423 * 184.03316 * 6 5 4 9 9 N 1.31509 * 120.00793 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99708 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47234 * 89.99857 * 10 8 6 12 12 H 1.48495 * 109.47120 * 210.00344 * 10 8 6 13 13 H 1.48504 * 109.47076 * 330.00045 * 10 8 6 14 14 C 1.46909 * 110.99815 * 170.99618 * 4 2 1 15 15 C 1.53001 * 109.46860 * 293.95130 * 14 4 2 16 16 H 1.09000 * 112.50755 * 45.33652 * 15 14 4 17 17 C 1.52880 * 113.21757 * 175.21229 * 15 14 4 18 18 C 1.51423 * 84.73647 * 115.23407 * 17 15 14 19 19 C 1.38944 * 145.53501 * 180.02562 * 18 17 15 20 20 C 1.37971 * 120.32644 * 180.02562 * 19 18 17 21 21 C 1.38246 * 120.17721 * 359.97438 * 20 19 18 22 22 C 1.38174 * 119.74555 * 0.02562 * 21 20 19 23 23 C 1.38231 * 120.12856 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47260 * 306.06291 * 1 2 3 25 25 H 1.09008 * 109.46628 * 66.05552 * 1 2 3 26 26 H 1.08993 * 109.47608 * 186.05681 * 1 2 3 27 27 H 1.09002 * 109.47333 * 239.99676 * 2 1 3 28 28 H 1.08993 * 109.47372 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46785 * 299.99680 * 3 2 1 30 30 H 1.09002 * 109.47050 * 59.99502 * 3 2 1 31 31 H 1.09000 * 109.47229 * 280.32641 * 5 4 2 32 32 H 1.09001 * 109.46834 * 40.32758 * 5 4 2 33 33 H 0.96992 * 120.00930 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.46943 * 173.95554 * 14 4 2 35 35 H 1.09001 * 109.46790 * 53.95081 * 14 4 2 36 36 H 1.09005 * 113.98987 * 229.18048 * 17 15 14 37 37 H 1.09000 * 113.99196 * 1.28421 * 17 15 14 38 38 H 1.08000 * 119.83510 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.91161 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.12334 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.93490 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 1.6496 0.0398 2.4181 6 6 1.7211 -0.8884 3.6031 7 1 2.0746 -1.9009 3.4755 8 6 1.3352 -0.4449 4.8503 9 7 0.9044 0.7879 5.0057 10 14 1.4245 -1.5952 6.3194 11 1 2.7575 -1.4744 6.9625 12 1 0.3681 -1.2315 7.2977 13 1 1.2186 -2.9943 5.8659 14 6 3.4721 -0.9009 1.1311 15 6 3.7950 -1.8714 -0.0068 16 1 3.2512 -1.6371 -0.9220 17 6 5.2956 -2.0601 -0.2304 18 6 5.0377 -3.4901 0.1954 19 6 5.6053 -4.7378 0.4227 20 6 4.8225 -5.7930 0.8440 21 6 3.4661 -5.6156 1.0437 22 6 2.8963 -4.3771 0.8192 23 6 3.6795 -3.3192 0.3971 24 1 -0.3634 0.6050 0.8307 25 1 -0.3633 0.4171 -0.9393 26 1 -0.3634 -1.0218 0.1084 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.3389 0.8713 2.5656 32 1 0.6342 0.4231 2.3174 33 1 0.6326 1.0998 5.8830 34 1 3.8243 -1.3174 2.0747 35 1 3.9676 0.0524 0.9472 36 1 5.6052 -1.9563 -1.2704 37 1 5.9212 -1.4973 0.4624 38 1 6.6643 -4.8825 0.2680 39 1 5.2707 -6.7600 1.0183 40 1 2.8543 -6.4421 1.3739 41 1 1.8368 -4.2352 0.9739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090976993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:17 Heat of formation + Delta-G solvation = 45.211521 kcal Electronic energy + Delta-G solvation = -19643.705048 eV Core-core repulsion = 16909.873990 eV Total energy + Delta-G solvation = -2733.831058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52583 -39.20865 -36.40284 -34.86637 -32.53087 -31.53505 -29.89937 -28.07032 -27.95374 -26.46483 -24.27049 -24.00586 -22.22411 -20.91305 -19.75021 -18.63822 -17.49839 -16.94640 -16.52416 -16.16473 -15.96850 -15.41881 -15.18661 -14.75521 -14.47856 -14.14841 -13.90714 -13.83318 -13.75443 -13.16004 -12.95269 -12.94188 -12.72803 -12.65662 -12.55000 -12.20536 -12.17199 -12.10021 -11.97488 -11.65663 -11.24917 -11.13198 -10.95804 -10.56056 -9.64095 -9.43003 -8.82967 -8.17691 -6.26105 0.49557 0.57598 1.36654 1.37381 1.49218 2.39282 2.92667 3.12187 3.26001 3.34840 3.63732 3.90384 4.03679 4.16356 4.26263 4.28957 4.32717 4.44409 4.57820 4.63394 4.75140 4.80604 4.81336 4.85428 4.92012 4.97423 5.02980 5.09072 5.09572 5.19006 5.31232 5.34807 5.40755 5.44114 5.48984 5.57656 5.67452 5.69774 5.97784 6.14537 6.20874 6.49511 6.76842 6.90723 7.42623 8.91925 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.007691 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.995821 B = 3639.895560 C = 4941.638545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.069 3.931 3 C -0.176 4.176 4 N -0.534 5.534 5 C 0.212 3.788 6 C -0.514 4.514 7 H 0.051 0.949 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.269 1.269 14 C 0.083 3.917 15 C -0.037 4.037 16 H 0.100 0.900 17 C -0.059 4.059 18 C -0.148 4.148 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.107 4.107 23 C -0.129 4.129 24 H 0.031 0.969 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.030 0.970 31 H -0.039 1.039 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.782 -7.737 -12.868 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.040 4.040 3 C -0.235 4.235 4 N -0.258 5.258 5 C 0.086 3.914 6 C -0.553 4.553 7 H 0.069 0.931 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.783 3.217 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.194 1.194 14 C -0.045 4.045 15 C -0.055 4.055 16 H 0.118 0.882 17 C -0.096 4.096 18 C -0.148 4.148 19 C -0.128 4.128 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.126 4.126 23 C -0.129 4.129 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.049 0.951 31 H -0.021 1.021 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.477 -8.098 -12.708 16.822 hybrid contribution -0.073 0.579 1.372 1.491 sum 7.404 -7.519 -11.337 15.488 Atomic orbital electron populations 1.21771 0.94834 1.01419 1.01200 1.21847 0.95830 0.92479 0.93814 1.22377 1.01113 0.98265 1.01717 1.62223 1.12359 1.48975 1.02251 1.19325 0.94082 0.91081 0.86880 1.21478 1.42088 0.98538 0.93194 0.93062 1.25778 0.95207 0.96655 1.01731 1.70059 1.45613 1.17568 1.24200 0.85561 0.77916 0.79278 0.78979 1.20035 1.20499 1.19409 1.21785 0.88727 0.96596 0.97434 1.21319 0.96503 0.89515 0.98194 0.88178 1.21825 0.94925 0.89422 1.03405 1.22707 0.95711 0.96062 1.00352 1.20824 1.00772 0.91265 0.99939 1.21260 0.93564 0.99659 0.99968 1.21281 0.96150 0.96592 1.00575 1.20448 0.99872 0.92569 0.99664 1.21841 0.95976 0.96322 0.98747 0.94982 0.90165 0.93107 0.88806 0.92670 0.90288 0.95084 1.02108 0.96722 0.92836 0.93580 0.94671 0.86273 0.88536 0.84441 0.83213 0.84175 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.00 71.98 0.65 -3.95 16 2 C 0.07 2.37 2.80 44.91 0.13 2.50 16 3 C -0.18 -5.75 8.54 71.98 0.61 -5.13 16 4 N -0.53 -22.90 4.38 -875.48 -3.84 -26.73 16 5 C 0.21 11.35 3.38 85.56 0.29 11.64 16 6 C -0.51 -30.08 8.60 25.60 0.22 -29.86 16 7 H 0.05 3.04 7.68 -2.91 -0.02 3.02 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 10 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.08 3.17 4.35 86.30 0.38 3.55 16 15 C -0.04 -1.13 3.70 -13.91 -0.05 -1.18 16 16 H 0.10 2.78 6.15 -2.39 -0.01 2.77 16 17 C -0.06 -1.41 8.01 30.04 0.24 -1.17 16 18 C -0.15 -4.23 7.32 -21.79 -0.16 -4.39 16 19 C -0.11 -2.76 10.05 22.38 0.22 -2.53 16 20 C -0.13 -3.07 10.03 22.21 0.22 -2.85 16 21 C -0.13 -3.56 10.06 22.26 0.22 -3.34 16 22 C -0.11 -3.63 10.04 22.25 0.22 -3.40 16 23 C -0.13 -4.30 7.00 -19.82 -0.14 -4.44 16 24 H 0.03 1.26 6.47 -2.39 -0.02 1.24 16 25 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 2.77 6.01 -2.39 -0.01 2.76 16 28 H 0.05 1.72 6.54 -2.39 -0.02 1.70 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.03 1.20 6.79 -2.39 -0.02 1.19 16 31 H -0.04 -2.24 7.32 -2.39 -0.02 -2.26 16 32 H 0.01 0.85 5.92 -2.39 -0.01 0.83 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.05 2.08 7.22 -2.39 -0.02 2.06 16 35 H 0.04 1.29 6.35 -2.39 -0.02 1.27 16 36 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.10 2.24 7.99 -2.39 -0.02 2.22 16 38 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.10 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -67.50 324.38 2.99 -64.51 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.00 Total: 14.94 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 3.52 Total: -43.86 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -3.55 Total: -83.60 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -67.50 2.99 -64.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090976993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.721 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds