Wall clock time and date at job start Mon Mar 30 2020 07:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47089 * 2 1 4 4 C 1.53003 * 109.47142 * 240.00238 * 2 1 3 5 5 C 1.53001 * 109.47503 * 120.00110 * 2 1 3 6 6 C 1.53516 * 114.17099 * 65.51997 * 5 2 1 7 7 N 1.47473 * 87.93160 * 139.86429 * 6 5 2 8 8 C 1.38860 * 111.00215 * 221.29792 * 7 6 5 9 9 C 1.39564 * 119.84173 * 228.86303 * 8 7 6 10 10 C 1.36336 * 120.15762 * 179.97438 * 9 8 7 11 11 C 1.40884 * 119.83865 * 0.02562 * 10 9 8 12 12 C 1.41137 * 120.15298 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00218 * 28.29960 * 12 11 10 14 14 C 1.39864 * 120.00043 * 208.29062 * 12 11 10 15 15 N 1.30908 * 119.99738 * 11.03961 * 14 12 11 16 16 Si 1.86796 * 120.00279 * 191.03544 * 14 12 11 17 17 H 1.48504 * 109.47113 * 60.00148 * 16 14 12 18 18 H 1.48502 * 109.47056 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47168 * 300.00085 * 16 14 12 20 20 C 1.40884 * 119.69192 * 0.02562 * 11 10 9 21 21 C 1.36343 * 119.83006 * 359.97438 * 20 11 10 22 22 C 1.47481 * 87.83776 * 332.99375 * 7 6 5 23 23 H 1.09004 * 109.47459 * 299.99757 * 1 2 3 24 24 H 1.08999 * 109.47256 * 60.00199 * 1 2 3 25 25 H 1.09006 * 109.47449 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47266 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46909 * 300.00014 * 3 2 1 28 28 H 1.08997 * 109.47200 * 60.00342 * 3 2 1 29 29 H 1.09007 * 109.46763 * 294.45117 * 4 2 1 30 30 H 1.09002 * 109.47193 * 54.45209 * 4 2 1 31 31 H 1.08999 * 109.47008 * 174.45681 * 4 2 1 32 32 H 1.08999 * 113.25265 * 292.57402 * 5 2 1 33 33 H 1.09005 * 113.47442 * 25.09640 * 6 5 2 34 34 H 1.08998 * 113.53032 * 254.64399 * 6 5 2 35 35 H 1.08005 * 119.92040 * 0.02562 * 9 8 7 36 36 H 1.08007 * 120.08034 * 180.28129 * 10 9 8 37 37 H 0.96996 * 120.00085 * 180.02562 * 15 14 12 38 38 H 1.07990 * 120.08476 * 180.02562 * 20 11 10 39 39 H 1.08011 * 119.91502 * 180.02562 * 21 20 11 40 40 H 1.08994 * 113.48225 * 141.78089 * 22 7 6 41 41 H 1.09008 * 113.47559 * 272.24540 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.7024 -2.2182 1.2926 7 7 3.0522 -2.4522 1.8387 8 6 3.6309 -3.5789 1.2696 9 6 4.2167 -4.5467 2.0869 10 6 4.7863 -5.6557 1.5351 11 6 4.7829 -5.8231 0.1362 12 6 5.3710 -6.9683 -0.4421 13 1 5.4096 -7.8942 0.1125 14 6 5.9038 -6.9043 -1.7337 15 7 6.0550 -5.7449 -2.3226 16 14 6.3998 -8.4729 -2.6184 17 1 5.2145 -9.3558 -2.7627 18 1 6.9331 -8.1356 -3.9627 19 1 7.4468 -9.1743 -1.8329 20 6 4.1906 -4.8415 -0.6826 21 6 3.6248 -3.7376 -0.1169 22 6 3.4856 -1.2265 1.1423 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7600 -1.7736 -1.2010 30 1 1.5978 -0.2679 -2.1365 31 1 3.1254 -0.6360 -1.3003 32 1 1.8210 -0.1874 2.1739 33 1 1.5506 -2.6579 0.3068 34 1 0.9027 -2.4638 1.9913 35 1 4.2182 -4.4172 3.1592 36 1 5.2353 -6.4061 2.1690 37 1 6.4241 -5.7005 -3.2185 38 1 4.1840 -4.9636 -1.7556 39 1 3.1699 -2.9844 -0.7434 40 1 4.1972 -0.6308 1.7139 41 1 3.8097 -1.4015 0.1164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093965580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:03 Heat of formation + Delta-G solvation = 46.481180 kcal Electronic energy + Delta-G solvation = -19578.929098 eV Core-core repulsion = 16845.153097 eV Total energy + Delta-G solvation = -2733.776001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74300 -37.37824 -35.59757 -33.44019 -30.03638 -29.51972 -27.48304 -27.36609 -27.07597 -25.09255 -24.06022 -21.61796 -20.88636 -19.37034 -17.86354 -17.34533 -16.31790 -15.40376 -15.12725 -14.51638 -14.06171 -13.93615 -13.68849 -13.22960 -13.15254 -12.72821 -12.50306 -12.23592 -12.06960 -11.85567 -11.72949 -11.47294 -11.32369 -11.17561 -10.98277 -10.90730 -10.80283 -10.51194 -10.30861 -10.03601 -9.84810 -9.76001 -9.46444 -9.22381 -8.08054 -7.56523 -7.19439 -6.75499 -4.39124 2.66418 3.04017 3.06962 3.08531 3.14798 3.90550 4.54184 4.63277 4.68517 4.86266 5.08190 5.26746 5.44329 5.57776 5.60411 5.67848 5.73441 5.80146 5.89156 5.93406 5.96792 6.08950 6.11598 6.17960 6.18680 6.23796 6.28917 6.39859 6.41707 6.44413 6.69380 6.86637 6.89068 7.04627 7.07639 7.33652 7.46859 7.61967 7.99461 8.05781 8.21950 8.40872 8.62494 8.85438 8.98131 10.17532 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.004905 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.099768 B = 5706.835708 C = 6240.255923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.152 4.152 5 C -0.109 4.109 6 C 0.004 3.996 7 N -0.420 5.420 8 C -0.087 4.087 9 C -0.059 4.059 10 C -0.224 4.224 11 C 0.112 3.888 12 C -0.459 4.459 13 H 0.077 0.923 14 C 0.073 3.927 15 N -0.800 5.800 16 Si 0.912 3.088 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.153 4.153 21 C -0.128 4.128 22 C 0.001 3.999 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.280 0.720 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 9.260 0.630 11.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.208 4.208 5 C -0.128 4.128 6 C -0.124 4.124 7 N -0.139 5.139 8 C -0.183 4.183 9 C -0.078 4.078 10 C -0.244 4.244 11 C 0.110 3.890 12 C -0.489 4.489 13 H 0.095 0.905 14 C -0.144 4.144 15 N -0.425 5.425 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.173 4.173 21 C -0.147 4.147 22 C -0.127 4.127 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.761 9.246 1.131 11.510 hybrid contribution 0.331 -0.693 -1.352 1.555 sum -6.430 8.553 -0.221 10.703 Atomic orbital electron populations 1.21816 0.94717 1.01829 1.01168 1.20421 0.95343 0.95225 0.94887 1.21822 1.01174 0.95334 1.01170 1.22141 1.01412 1.00753 0.96533 1.22814 0.96973 0.95438 0.97581 1.24036 0.94420 0.94263 0.99639 1.66151 1.02197 1.00572 1.44951 1.18632 1.11906 0.96370 0.91374 1.20089 0.97080 0.93517 0.97147 1.20742 1.09127 0.99277 0.95295 1.17692 0.88149 0.92367 0.90840 1.19544 1.33005 0.97544 0.98773 0.90471 1.25916 0.93850 0.97418 0.97219 1.69823 1.33328 1.25335 1.14043 0.86306 0.79693 0.81875 0.78480 1.18854 1.20318 1.18985 1.21020 1.00738 0.95459 1.00121 1.20968 1.01301 0.98361 0.94120 1.24126 0.96037 0.93287 0.99223 0.92864 0.93029 0.92525 0.92585 0.93026 0.92888 0.91930 0.92925 0.92075 0.88936 0.90818 0.91196 0.88898 0.88777 0.90874 0.86276 0.88899 0.91239 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.34 37.15 0.31 -1.16 16 2 C -0.06 -0.70 0.71 -154.51 -0.11 -0.80 16 3 C -0.14 -1.45 8.46 37.16 0.31 -1.14 16 4 C -0.15 -1.98 6.91 37.16 0.26 -1.72 16 5 C -0.11 -1.53 3.34 -90.09 -0.30 -1.83 16 6 C 0.00 0.07 6.24 -7.55 -0.05 0.02 16 7 N -0.42 -8.19 6.42 -180.43 -1.16 -9.35 16 8 C -0.09 -1.98 5.26 -83.69 -0.44 -2.42 16 9 C -0.06 -1.40 9.90 -39.77 -0.39 -1.79 16 10 C -0.22 -5.60 9.74 -39.27 -0.38 -5.99 16 11 C 0.11 2.99 5.56 -106.80 -0.59 2.40 16 12 C -0.46 -12.16 9.05 -37.87 -0.34 -12.51 16 13 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 14 C 0.07 1.82 5.25 -17.34 -0.09 1.73 16 15 N -0.80 -20.61 10.81 55.54 0.60 -20.01 16 16 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 C -0.15 -3.98 8.60 -39.26 -0.34 -4.31 16 21 C -0.13 -2.96 7.67 -39.77 -0.31 -3.27 16 22 C 0.00 0.01 6.81 -7.55 -0.05 -0.04 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.91 4.79 -51.92 -0.25 0.66 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.85 6.47 -51.93 -0.34 0.51 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.28 4.41 -51.93 -0.23 1.05 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 2.02 8.06 -52.48 -0.42 1.59 16 36 H 0.09 2.21 8.06 -52.48 -0.42 1.78 16 37 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 38 H 0.12 3.18 6.18 -52.49 -0.32 2.86 16 39 H 0.09 1.94 4.13 -52.48 -0.22 1.72 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.41 3.77 -51.92 -0.20 1.21 16 LS Contribution 312.91 15.07 4.72 4.72 Total: -1.00 -26.98 312.91 -9.53 -36.51 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.15 Total: 7.37 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: -2.51 Total: -32.83 kcal Atomic # 7 Polarization: -28.80 SS G_CDS: -0.56 Total: -29.36 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.98 -9.53 -36.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.989 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds