Wall clock time and date at job start Mon Mar 30 2020 07:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47089 * 2 1 4 4 C 1.53003 * 109.47142 * 240.00238 * 2 1 3 5 5 C 1.53001 * 109.47503 * 120.00110 * 2 1 3 6 6 C 1.53516 * 114.17099 * 65.51997 * 5 2 1 7 7 N 1.47473 * 87.93160 * 139.86429 * 6 5 2 8 8 C 1.38860 * 111.00215 * 221.29792 * 7 6 5 9 9 C 1.39564 * 119.84173 * 228.86303 * 8 7 6 10 10 C 1.36336 * 120.15762 * 179.97438 * 9 8 7 11 11 C 1.40884 * 119.83865 * 0.02562 * 10 9 8 12 12 C 1.41137 * 120.15298 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00218 * 28.29960 * 12 11 10 14 14 C 1.39864 * 120.00043 * 208.29062 * 12 11 10 15 15 N 1.30908 * 119.99738 * 11.03961 * 14 12 11 16 16 Si 1.86796 * 120.00279 * 191.03544 * 14 12 11 17 17 H 1.48504 * 109.47113 * 60.00148 * 16 14 12 18 18 H 1.48502 * 109.47056 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47168 * 300.00085 * 16 14 12 20 20 C 1.40884 * 119.69192 * 0.02562 * 11 10 9 21 21 C 1.36343 * 119.83006 * 359.97438 * 20 11 10 22 22 C 1.47481 * 87.83776 * 332.99375 * 7 6 5 23 23 H 1.09004 * 109.47459 * 299.99757 * 1 2 3 24 24 H 1.08999 * 109.47256 * 60.00199 * 1 2 3 25 25 H 1.09006 * 109.47449 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47266 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46909 * 300.00014 * 3 2 1 28 28 H 1.08997 * 109.47200 * 60.00342 * 3 2 1 29 29 H 1.09007 * 109.46763 * 294.45117 * 4 2 1 30 30 H 1.09002 * 109.47193 * 54.45209 * 4 2 1 31 31 H 1.08999 * 109.47008 * 174.45681 * 4 2 1 32 32 H 1.08999 * 113.25265 * 292.57402 * 5 2 1 33 33 H 1.09005 * 113.47442 * 25.09640 * 6 5 2 34 34 H 1.08998 * 113.53032 * 254.64399 * 6 5 2 35 35 H 1.08005 * 119.92040 * 0.02562 * 9 8 7 36 36 H 1.08007 * 120.08034 * 180.28129 * 10 9 8 37 37 H 0.96996 * 120.00085 * 180.02562 * 15 14 12 38 38 H 1.07990 * 120.08476 * 180.02562 * 20 11 10 39 39 H 1.08011 * 119.91502 * 180.02562 * 21 20 11 40 40 H 1.08994 * 113.48225 * 141.78089 * 22 7 6 41 41 H 1.09008 * 113.47559 * 272.24540 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.7024 -2.2182 1.2926 7 7 3.0522 -2.4522 1.8387 8 6 3.6309 -3.5789 1.2696 9 6 4.2167 -4.5467 2.0869 10 6 4.7863 -5.6557 1.5351 11 6 4.7829 -5.8231 0.1362 12 6 5.3710 -6.9683 -0.4421 13 1 5.4096 -7.8942 0.1125 14 6 5.9038 -6.9043 -1.7337 15 7 6.0550 -5.7449 -2.3226 16 14 6.3998 -8.4729 -2.6184 17 1 5.2145 -9.3558 -2.7627 18 1 6.9331 -8.1356 -3.9627 19 1 7.4468 -9.1743 -1.8329 20 6 4.1906 -4.8415 -0.6826 21 6 3.6248 -3.7376 -0.1169 22 6 3.4856 -1.2265 1.1423 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7600 -1.7736 -1.2010 30 1 1.5978 -0.2679 -2.1365 31 1 3.1254 -0.6360 -1.3003 32 1 1.8210 -0.1874 2.1739 33 1 1.5506 -2.6579 0.3068 34 1 0.9027 -2.4638 1.9913 35 1 4.2182 -4.4172 3.1592 36 1 5.2353 -6.4061 2.1690 37 1 6.4241 -5.7005 -3.2185 38 1 4.1840 -4.9636 -1.7556 39 1 3.1699 -2.9844 -0.7434 40 1 4.1972 -0.6308 1.7139 41 1 3.8097 -1.4015 0.1164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:02 Heat of formation + Delta-G solvation = 32.587534 kcal Electronic energy + Delta-G solvation = -19579.531572 eV Core-core repulsion = 16845.153097 eV Total energy + Delta-G solvation = -2734.378475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.16038 -39.09196 -36.90364 -35.26006 -31.79755 -31.42344 -28.84809 -28.41223 -28.24415 -26.37841 -25.79477 -23.24593 -22.64002 -20.95065 -19.28917 -19.04756 -17.79948 -17.05691 -16.57109 -15.76035 -15.69078 -15.37901 -15.20931 -14.53937 -14.48792 -14.34018 -13.95937 -13.69312 -13.52754 -13.21212 -12.98141 -12.89614 -12.80910 -12.50298 -12.40357 -12.30018 -12.13178 -11.87516 -11.75186 -11.54257 -11.35369 -11.08157 -11.05263 -11.01907 -9.65027 -9.49810 -9.12044 -8.62841 -6.37696 0.82134 1.13179 1.37069 1.48179 1.49892 2.19421 2.67922 3.28354 3.47014 3.66498 3.79453 4.03044 4.18751 4.30412 4.34859 4.44134 4.52065 4.64053 4.70787 4.76602 4.78807 4.82727 4.91263 4.96443 5.00328 5.05381 5.11699 5.12358 5.17434 5.22854 5.30535 5.38162 5.39843 5.41715 5.56682 5.58422 5.61419 5.72378 6.04538 6.10769 6.30192 6.54852 6.73641 6.89804 7.07173 8.32456 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.004905 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.099768 B = 5706.835708 C = 6240.255923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.054 4.054 3 C -0.135 4.135 4 C -0.152 4.152 5 C -0.083 4.083 6 C 0.001 3.999 7 N -0.436 5.436 8 C -0.075 4.075 9 C -0.071 4.071 10 C -0.236 4.236 11 C 0.080 3.920 12 C -0.496 4.496 13 H 0.077 0.923 14 C 0.032 3.968 15 N -0.831 5.831 16 Si 0.986 3.014 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.175 4.175 21 C -0.126 4.126 22 C -0.004 4.004 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.288 0.712 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 10.590 0.681 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.055 4.055 3 C -0.193 4.193 4 C -0.208 4.208 5 C -0.102 4.102 6 C -0.126 4.126 7 N -0.155 5.155 8 C -0.170 4.170 9 C -0.089 4.089 10 C -0.256 4.256 11 C 0.078 3.922 12 C -0.526 4.526 13 H 0.095 0.905 14 C -0.182 4.182 15 N -0.458 5.458 16 Si 0.807 3.193 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.195 4.195 21 C -0.146 4.146 22 C -0.132 4.132 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.726 10.593 1.197 13.166 hybrid contribution 0.568 -0.972 -1.286 1.709 sum -7.159 9.621 -0.090 11.993 Atomic orbital electron populations 1.21799 0.93274 1.01736 1.02511 1.20414 0.96410 0.95737 0.92939 1.21801 1.00754 0.94202 1.02500 1.22132 1.00688 0.99911 0.98117 1.22744 0.94009 0.94034 0.99412 1.24067 0.92971 0.96348 0.99212 1.66218 1.03848 1.00104 1.45320 1.18884 1.10149 0.96957 0.91013 1.20366 0.96969 0.93314 0.98294 1.20922 1.09599 1.00151 0.94951 1.18031 0.89148 0.93202 0.91834 1.19802 1.34771 0.97680 1.00342 0.90525 1.26779 0.93199 1.00842 0.97338 1.69886 1.33857 1.27386 1.14625 0.85191 0.79395 0.77348 0.77408 1.18385 1.19137 1.18408 1.20994 1.02292 0.96757 0.99466 1.21168 1.00582 0.97917 0.94925 1.24159 0.98326 0.92334 0.98340 0.91551 0.91742 0.93363 0.93294 0.91781 0.91554 0.93822 0.91336 0.93399 0.87314 0.91761 0.90218 0.87057 0.88112 0.90188 0.87847 0.86976 0.90637 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.34 71.98 0.60 -1.87 16 2 C -0.05 -1.16 0.71 -52.18 -0.04 -1.19 16 3 C -0.14 -2.42 8.46 71.98 0.61 -1.81 16 4 C -0.15 -3.76 6.91 71.98 0.50 -3.26 16 5 C -0.08 -2.13 3.34 -10.45 -0.03 -2.16 16 6 C 0.00 0.04 6.24 83.58 0.52 0.57 16 7 N -0.44 -16.49 6.42 -724.75 -4.65 -21.14 16 8 C -0.07 -3.38 5.26 38.67 0.20 -3.18 16 9 C -0.07 -3.34 9.90 22.15 0.22 -3.12 16 10 C -0.24 -12.10 9.74 22.47 0.22 -11.88 16 11 C 0.08 4.45 5.56 -21.27 -0.12 4.33 16 12 C -0.50 -27.23 9.05 23.38 0.21 -27.02 16 13 H 0.08 4.03 7.87 -2.91 -0.02 4.01 16 14 C 0.03 1.65 5.25 85.22 0.45 2.09 16 15 N -0.83 -44.00 10.81 21.82 0.24 -43.76 16 16 Si 0.99 38.50 29.57 68.60 2.03 40.53 16 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 C -0.17 -9.42 8.60 22.48 0.19 -9.22 16 21 C -0.13 -5.97 7.67 22.15 0.17 -5.80 16 22 C 0.00 -0.13 6.81 83.57 0.57 0.43 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 0.96 7.65 -2.38 -0.02 0.94 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.24 4.79 -2.38 -0.01 1.23 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.30 6.47 -2.39 -0.02 1.28 16 32 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.06 2.19 4.41 -2.38 -0.01 2.18 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 38 H 0.10 5.80 6.18 -2.92 -0.02 5.78 16 39 H 0.11 4.76 4.13 -2.91 -0.01 4.75 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 41 H 0.07 2.37 3.77 -2.38 -0.01 2.36 16 Total: -1.00 -59.11 312.91 2.90 -56.21 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 1.01 Total: 31.25 kcal Atomic # 6 Polarization: -67.36 SS G_CDS: 4.27 Total: -63.09 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -4.41 Total: -64.90 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -59.11 2.90 -56.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.796 kcal (2) G-P(sol) polarization free energy of solvation -59.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds