Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.35224 * 2 1 4 4 C 1.54592 * 110.30690 * 237.86467 * 2 1 3 5 5 C 1.54932 * 102.92302 * 263.03664 * 4 2 1 6 6 N 1.48808 * 103.34757 * 322.69296 * 5 4 2 7 7 C 1.46903 * 111.19002 * 159.50342 * 6 5 4 8 8 H 1.09000 * 109.46704 * 297.66664 * 7 6 5 9 9 C 1.50699 * 109.47554 * 177.66205 * 7 6 5 10 10 H 1.07995 * 120.00109 * 125.37836 * 9 7 6 11 11 C 1.37875 * 119.99745 * 305.38307 * 9 7 6 12 12 N 1.31514 * 120.00460 * 10.01710 * 11 9 7 13 13 Si 1.86799 * 119.99825 * 190.01955 * 11 9 7 14 14 H 1.48505 * 109.47204 * 59.99756 * 13 11 9 15 15 H 1.48498 * 109.47440 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47174 * 300.00083 * 13 11 9 17 17 C 1.50701 * 109.46874 * 57.65878 * 7 6 5 18 18 C 1.38240 * 120.00093 * 33.40413 * 17 7 6 19 19 C 1.38228 * 119.99907 * 179.76157 * 18 17 7 20 20 C 1.38229 * 120.00317 * 0.48850 * 19 18 17 21 21 C 1.38238 * 119.99886 * 359.78465 * 20 19 18 22 22 C 1.38232 * 120.00174 * 359.95840 * 21 20 19 23 23 C 1.47898 * 105.68004 * 38.97215 * 6 5 4 24 24 H 1.09007 * 109.47036 * 297.85330 * 1 2 3 25 25 H 1.08996 * 109.47640 * 57.85142 * 1 2 3 26 26 H 1.09001 * 109.47179 * 177.85792 * 1 2 3 27 27 H 1.08996 * 109.47202 * 182.14275 * 3 2 1 28 28 H 1.09000 * 109.47714 * 302.15113 * 3 2 1 29 29 H 1.09002 * 109.46800 * 62.14531 * 3 2 1 30 30 H 1.08995 * 110.72832 * 21.39615 * 4 2 1 31 31 H 1.09008 * 110.72466 * 144.49972 * 4 2 1 32 32 H 1.09006 * 110.66977 * 81.01906 * 5 4 2 33 33 H 1.08996 * 110.67498 * 203.98752 * 5 4 2 34 34 H 0.96995 * 120.00074 * 180.02562 * 12 11 9 35 35 H 1.08000 * 119.99412 * 359.97438 * 18 17 7 36 36 H 1.08008 * 120.00046 * 180.24833 * 19 18 17 37 37 H 1.08002 * 120.00778 * 179.76576 * 20 19 18 38 38 H 1.08005 * 119.99827 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00580 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.92242 * 215.45355 * 23 6 5 41 41 H 1.09005 * 109.91963 * 94.35769 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 6 2.0665 -0.7712 -1.2277 5 6 2.3584 -2.1795 -0.6518 6 7 2.8798 -1.8917 0.7119 7 6 2.7616 -3.0674 1.5847 8 1 1.7100 -3.3300 1.7000 9 6 3.3517 -2.7521 2.9351 10 1 2.7613 -2.8924 3.8284 11 6 4.6452 -2.2844 3.0299 12 7 5.2964 -1.9265 1.9448 13 14 5.4729 -2.1591 4.6998 14 1 5.5311 -3.5046 5.3257 15 1 6.8511 -1.6324 4.5310 16 1 4.6949 -1.2415 5.5703 17 6 3.5041 -4.2259 0.9701 18 6 4.6515 -3.9988 0.2333 19 6 5.3353 -5.0618 -0.3263 20 6 4.8662 -6.3511 -0.1576 21 6 3.7157 -6.5778 0.5745 22 6 3.0348 -5.5152 1.1386 23 6 2.0646 -0.7684 1.2227 24 1 -0.3633 0.4802 0.9087 25 1 -0.3634 0.5468 -0.8700 26 1 -0.3633 -1.0269 -0.0384 27 1 3.1513 1.4180 -0.0384 28 1 1.6758 1.9654 -0.8700 29 1 1.7383 1.9421 0.9086 30 1 1.3102 -0.8239 -2.0108 31 1 2.9788 -0.3091 -1.6051 32 1 1.4433 -2.7690 -0.5943 33 1 3.1084 -2.6934 -1.2531 34 1 6.2065 -1.5979 2.0115 35 1 5.0155 -2.9910 0.0977 36 1 6.2340 -4.8847 -0.8987 37 1 5.3983 -7.1814 -0.5980 38 1 3.3490 -7.5851 0.7060 39 1 2.1358 -5.6922 1.7102 40 1 2.6813 -0.1100 1.8345 41 1 1.2324 -1.1518 1.8132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094802919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = 31.114508 kcal Electronic energy + Delta-G solvation = -20384.215354 eV Core-core repulsion = 17649.773004 eV Total energy + Delta-G solvation = -2734.442350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.97794 -37.71876 -34.33551 -31.96155 -30.26779 -29.63495 -28.77141 -26.93952 -26.27415 -24.60050 -22.44687 -21.34282 -20.78607 -19.47263 -18.28185 -16.28072 -15.79059 -14.98901 -14.62518 -14.44210 -13.84574 -13.58775 -13.31242 -13.05900 -12.72417 -12.55750 -12.35778 -12.11000 -11.88905 -11.56664 -11.46593 -11.09567 -11.00284 -10.93380 -10.77258 -10.63236 -10.25116 -10.00914 -9.99698 -9.94054 -9.74364 -9.56591 -9.13397 -8.42394 -7.81911 -7.41013 -6.81863 -5.86995 -4.05550 2.47143 2.57478 3.32691 3.37458 3.41701 4.44259 4.93324 5.15467 5.17465 5.31905 5.36897 5.57065 5.80185 5.85795 5.92799 5.94008 5.98912 6.01294 6.10380 6.15045 6.20070 6.34392 6.38375 6.47445 6.57203 6.59119 6.67221 6.71771 6.73832 6.84155 6.95085 7.00267 7.09025 7.22646 7.27275 7.48126 7.66700 7.81798 7.97377 8.12561 8.27764 8.50458 8.56065 9.03817 9.60678 11.06525 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.009759 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.315769 B = 2868.511141 C = 4039.488189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.109 4.109 5 C 0.027 3.973 6 N -0.458 5.458 7 C 0.241 3.759 8 H -0.003 1.003 9 C -0.530 4.530 10 H 0.055 0.945 11 C 0.090 3.910 12 N -0.823 5.823 13 Si 0.877 3.123 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.030 4.030 18 C -0.072 4.072 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.142 4.142 22 C -0.137 4.137 23 C 0.075 3.925 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.256 0.744 35 H 0.162 0.838 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 1.025 -5.619 7.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.147 4.147 5 C -0.101 4.101 6 N -0.182 5.182 7 C 0.134 3.866 8 H 0.014 0.986 9 C -0.568 4.568 10 H 0.074 0.926 11 C -0.118 4.118 12 N -0.455 5.455 13 Si 0.705 3.295 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.031 4.031 18 C -0.090 4.090 19 C -0.166 4.166 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.054 4.054 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.180 0.820 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.887 1.245 -5.694 7.006 hybrid contribution -0.240 -0.423 1.162 1.260 sum -4.127 0.822 -4.531 6.184 Atomic orbital electron populations 1.21861 0.95338 1.01098 1.00782 1.21496 0.94323 0.95692 0.96815 1.21787 1.01398 0.95160 1.00303 1.22534 0.99910 0.96298 0.95977 1.23286 0.97114 0.95078 0.94647 1.65143 1.47952 1.06052 0.99073 1.18416 0.91300 0.85249 0.91617 0.98550 1.20743 0.98770 1.46776 0.90501 0.92649 1.24853 0.97131 0.94150 0.95659 1.70039 1.10670 1.38175 1.26652 0.86923 0.78782 0.78349 0.85474 1.20396 1.21268 1.20407 1.20326 0.95950 0.94218 0.92575 1.21822 0.93101 1.00681 0.93394 1.21180 1.00043 0.93371 1.01997 1.20796 0.97718 0.96462 1.02112 1.20761 0.96876 0.97641 1.00723 1.20900 1.00306 0.93119 1.01217 1.22548 0.94829 0.93937 0.94052 0.93034 0.93404 0.93119 0.92078 0.93803 0.93289 0.92812 0.91313 0.96253 0.91234 0.93413 0.82035 0.88020 0.88279 0.88089 0.87922 0.91043 0.95587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.21 37.16 0.31 -1.61 16 2 C -0.08 -1.37 0.97 -153.16 -0.15 -1.52 16 3 C -0.13 -1.94 8.23 37.16 0.31 -1.63 16 4 C -0.11 -1.82 6.16 -24.88 -0.15 -1.97 16 5 C 0.03 0.53 5.59 -1.75 -0.01 0.52 16 6 N -0.46 -10.20 3.03 -225.04 -0.68 -10.89 16 7 C 0.24 5.81 1.67 -70.01 -0.12 5.69 16 8 H 0.00 -0.08 7.88 -51.93 -0.41 -0.49 16 9 C -0.53 -13.97 8.10 -34.44 -0.28 -14.25 16 10 H 0.06 1.48 7.83 -52.49 -0.41 1.07 16 11 C 0.09 2.36 5.19 -17.82 -0.09 2.27 16 12 N -0.82 -21.52 9.19 55.43 0.51 -21.02 16 13 Si 0.88 20.73 29.55 -169.99 -5.02 15.71 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.03 -0.69 4.08 -104.62 -0.43 -1.12 16 18 C -0.07 -1.65 6.65 -39.58 -0.26 -1.91 16 19 C -0.15 -3.03 10.05 -39.59 -0.40 -3.43 16 20 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 21 C -0.14 -2.75 10.05 -39.58 -0.40 -3.14 16 22 C -0.14 -2.94 9.69 -39.58 -0.38 -3.32 16 23 C 0.07 1.54 5.33 -2.76 -0.01 1.52 16 24 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 31 H 0.07 1.16 7.84 -51.92 -0.41 0.75 16 32 H 0.02 0.38 8.02 -51.93 -0.42 -0.04 16 33 H 0.07 1.40 6.85 -51.93 -0.36 1.04 16 34 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 35 H 0.16 4.01 5.63 -52.49 -0.30 3.71 16 36 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 40 H 0.07 1.61 7.68 -51.93 -0.40 1.22 16 41 H 0.03 0.55 7.19 -51.93 -0.37 0.18 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -26.37 319.22 -9.69 -36.06 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.84 Total: 2.52 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -2.47 Total: -27.20 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: -0.17 Total: -31.90 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.37 -9.69 -36.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094802919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.176 kcal (2) G-P(sol) polarization free energy of solvation -26.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds