Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.35224 * 2 1 4 4 C 1.54592 * 110.30690 * 237.86467 * 2 1 3 5 5 C 1.54932 * 102.92302 * 263.03664 * 4 2 1 6 6 N 1.48808 * 103.34757 * 322.69296 * 5 4 2 7 7 C 1.46903 * 111.19002 * 159.50342 * 6 5 4 8 8 H 1.09000 * 109.46704 * 297.66664 * 7 6 5 9 9 C 1.50699 * 109.47554 * 177.66205 * 7 6 5 10 10 H 1.07995 * 120.00109 * 125.37836 * 9 7 6 11 11 C 1.37875 * 119.99745 * 305.38307 * 9 7 6 12 12 N 1.31514 * 120.00460 * 10.01710 * 11 9 7 13 13 Si 1.86799 * 119.99825 * 190.01955 * 11 9 7 14 14 H 1.48505 * 109.47204 * 59.99756 * 13 11 9 15 15 H 1.48498 * 109.47440 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47174 * 300.00083 * 13 11 9 17 17 C 1.50701 * 109.46874 * 57.65878 * 7 6 5 18 18 C 1.38240 * 120.00093 * 33.40413 * 17 7 6 19 19 C 1.38228 * 119.99907 * 179.76157 * 18 17 7 20 20 C 1.38229 * 120.00317 * 0.48850 * 19 18 17 21 21 C 1.38238 * 119.99886 * 359.78465 * 20 19 18 22 22 C 1.38232 * 120.00174 * 359.95840 * 21 20 19 23 23 C 1.47898 * 105.68004 * 38.97215 * 6 5 4 24 24 H 1.09007 * 109.47036 * 297.85330 * 1 2 3 25 25 H 1.08996 * 109.47640 * 57.85142 * 1 2 3 26 26 H 1.09001 * 109.47179 * 177.85792 * 1 2 3 27 27 H 1.08996 * 109.47202 * 182.14275 * 3 2 1 28 28 H 1.09000 * 109.47714 * 302.15113 * 3 2 1 29 29 H 1.09002 * 109.46800 * 62.14531 * 3 2 1 30 30 H 1.08995 * 110.72832 * 21.39615 * 4 2 1 31 31 H 1.09008 * 110.72466 * 144.49972 * 4 2 1 32 32 H 1.09006 * 110.66977 * 81.01906 * 5 4 2 33 33 H 1.08996 * 110.67498 * 203.98752 * 5 4 2 34 34 H 0.96995 * 120.00074 * 180.02562 * 12 11 9 35 35 H 1.08000 * 119.99412 * 359.97438 * 18 17 7 36 36 H 1.08008 * 120.00046 * 180.24833 * 19 18 17 37 37 H 1.08002 * 120.00778 * 179.76576 * 20 19 18 38 38 H 1.08005 * 119.99827 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00580 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.92242 * 215.45355 * 23 6 5 41 41 H 1.09005 * 109.91963 * 94.35769 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 6 2.0665 -0.7712 -1.2277 5 6 2.3584 -2.1795 -0.6518 6 7 2.8798 -1.8917 0.7119 7 6 2.7616 -3.0674 1.5847 8 1 1.7100 -3.3300 1.7000 9 6 3.3517 -2.7521 2.9351 10 1 2.7613 -2.8924 3.8284 11 6 4.6452 -2.2844 3.0299 12 7 5.2964 -1.9265 1.9448 13 14 5.4729 -2.1591 4.6998 14 1 5.5311 -3.5046 5.3257 15 1 6.8511 -1.6324 4.5310 16 1 4.6949 -1.2415 5.5703 17 6 3.5041 -4.2259 0.9701 18 6 4.6515 -3.9988 0.2333 19 6 5.3353 -5.0618 -0.3263 20 6 4.8662 -6.3511 -0.1576 21 6 3.7157 -6.5778 0.5745 22 6 3.0348 -5.5152 1.1386 23 6 2.0646 -0.7684 1.2227 24 1 -0.3633 0.4802 0.9087 25 1 -0.3634 0.5468 -0.8700 26 1 -0.3633 -1.0269 -0.0384 27 1 3.1513 1.4180 -0.0384 28 1 1.6758 1.9654 -0.8700 29 1 1.7383 1.9421 0.9086 30 1 1.3102 -0.8239 -2.0108 31 1 2.9788 -0.3091 -1.6051 32 1 1.4433 -2.7690 -0.5943 33 1 3.1084 -2.6934 -1.2531 34 1 6.2065 -1.5979 2.0115 35 1 5.0155 -2.9910 0.0977 36 1 6.2340 -4.8847 -0.8987 37 1 5.3983 -7.1814 -0.5980 38 1 3.3490 -7.5851 0.7060 39 1 2.1358 -5.6922 1.7102 40 1 2.6813 -0.1100 1.8345 41 1 1.2324 -1.1518 1.8132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094802919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = 19.533374 kcal Electronic energy + Delta-G solvation = -20384.717550 eV Core-core repulsion = 17649.773004 eV Total energy + Delta-G solvation = -2734.944546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58711 -39.27172 -36.01263 -33.78165 -31.90128 -31.26100 -30.35858 -28.16784 -28.04600 -26.21188 -24.17137 -22.96420 -22.38731 -21.21215 -19.68622 -18.20749 -17.41389 -16.79301 -16.16701 -16.13468 -15.48057 -15.09887 -14.91751 -14.56473 -14.23555 -14.03126 -13.89117 -13.68556 -13.42594 -13.21548 -13.08418 -12.81833 -12.62026 -12.52950 -12.33666 -12.25705 -11.96317 -11.69935 -11.41627 -11.37798 -11.34923 -11.19711 -10.91658 -10.42837 -9.45980 -9.10855 -8.57474 -7.85203 -6.10501 0.82120 0.95183 1.40576 1.43367 1.48087 2.46848 3.19611 3.35126 3.67154 3.82461 3.95955 4.11306 4.34015 4.36567 4.49364 4.53192 4.54690 4.63409 4.68553 4.82089 4.88455 4.89088 4.97023 5.02494 5.03828 5.09494 5.16527 5.21063 5.27668 5.34574 5.39592 5.46475 5.54456 5.62443 5.67056 5.75467 5.86072 5.99750 6.19661 6.35156 6.54545 6.62290 6.79903 7.13076 7.56806 9.04363 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.009759 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.315769 B = 2868.511141 C = 4039.488189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.123 4.123 4 C -0.100 4.100 5 C 0.030 3.970 6 N -0.472 5.472 7 C 0.243 3.757 8 H -0.023 1.023 9 C -0.553 4.553 10 H 0.038 0.962 11 C 0.060 3.940 12 N -0.831 5.831 13 Si 0.925 3.075 14 H -0.283 1.283 15 H -0.282 1.282 16 H -0.278 1.278 17 C -0.052 4.052 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.154 4.154 23 C 0.076 3.924 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.253 0.747 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 0.484 -7.022 8.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 C -0.181 4.181 4 C -0.138 4.138 5 C -0.098 4.098 6 N -0.196 5.196 7 C 0.136 3.864 8 H -0.005 1.005 9 C -0.590 4.590 10 H 0.056 0.944 11 C -0.148 4.148 12 N -0.463 5.463 13 Si 0.752 3.248 14 H -0.209 1.209 15 H -0.207 1.207 16 H -0.203 1.203 17 C -0.053 4.053 18 C -0.106 4.106 19 C -0.171 4.171 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.173 4.173 23 C -0.052 4.052 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.060 0.940 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.947 0.708 -7.102 8.155 hybrid contribution -0.230 -0.328 1.581 1.630 sum -4.177 0.381 -5.521 6.933 Atomic orbital electron populations 1.21805 0.93209 1.01135 1.02336 1.21482 0.95981 0.95988 0.94430 1.21725 1.00211 0.94276 1.01851 1.22507 1.00758 0.93995 0.96520 1.23244 0.96415 0.96954 0.93212 1.64945 1.48893 1.05701 1.00034 1.18290 0.90130 0.86493 0.91448 1.00522 1.20873 0.99289 1.47746 0.91132 0.94388 1.25283 0.97391 0.94074 0.98002 1.70164 1.10442 1.38245 1.27465 0.86178 0.78133 0.77851 0.82678 1.20904 1.20689 1.20324 1.20306 0.96543 0.94583 0.93857 1.21612 0.93713 1.00498 0.94790 1.21442 1.00483 0.93512 1.01674 1.21215 0.97326 0.96858 1.00934 1.21153 0.96442 0.98560 0.99290 1.21111 1.01029 0.93225 1.01927 1.22506 0.93583 0.93531 0.95629 0.92653 0.90567 0.93969 0.93926 0.90913 0.92929 0.89850 0.91484 0.96642 0.92154 0.93685 0.84405 0.85969 0.84431 0.84602 0.87600 0.93974 0.97174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.21 71.98 0.59 -2.83 16 2 C -0.08 -2.53 0.97 -51.31 -0.05 -2.58 16 3 C -0.12 -3.53 8.23 71.98 0.59 -2.94 16 4 C -0.10 -3.21 6.16 31.80 0.20 -3.01 16 5 C 0.03 1.18 5.59 86.59 0.48 1.67 16 6 N -0.47 -21.84 3.03 -865.91 -2.62 -24.46 16 7 C 0.24 12.31 1.67 43.42 0.07 12.38 16 8 H -0.02 -1.19 7.88 -2.39 -0.02 -1.20 16 9 C -0.55 -30.45 8.10 25.60 0.21 -30.24 16 10 H 0.04 2.14 7.83 -2.91 -0.02 2.12 16 11 C 0.06 3.21 5.19 84.65 0.44 3.65 16 12 N -0.83 -44.66 9.19 21.45 0.20 -44.47 16 13 Si 0.92 43.45 29.55 68.60 2.03 45.47 16 14 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 C -0.05 -2.47 4.08 -19.86 -0.08 -2.55 16 18 C -0.09 -4.06 6.65 22.27 0.15 -3.92 16 19 C -0.15 -6.04 10.05 22.27 0.22 -5.82 16 20 C -0.15 -5.09 10.05 22.27 0.22 -4.87 16 21 C -0.14 -4.94 10.05 22.27 0.22 -4.72 16 22 C -0.15 -6.60 9.69 22.27 0.22 -6.38 16 23 C 0.08 3.25 5.33 86.44 0.46 3.72 16 24 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.36 8.11 -2.39 -0.02 1.34 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 2.20 7.85 -2.39 -0.02 2.19 16 31 H 0.07 2.18 7.84 -2.38 -0.02 2.16 16 32 H 0.02 0.62 8.02 -2.38 -0.02 0.60 16 33 H 0.06 2.48 6.85 -2.39 -0.02 2.46 16 34 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 35 H 0.14 7.04 5.63 -2.91 -0.02 7.02 16 36 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 38 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 39 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.04 2.01 7.68 -2.39 -0.02 1.99 16 41 H 0.01 0.45 7.19 -2.38 -0.02 0.43 16 Total: -1.00 -58.47 319.22 4.52 -53.95 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.97 Total: 17.95 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 3.95 Total: -48.45 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.43 Total: -68.93 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -58.47 4.52 -53.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094802919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.483 kcal (2) G-P(sol) polarization free energy of solvation -58.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds