Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38234 * 120.00049 * 2 1 4 4 C 1.38232 * 119.99777 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00227 * 359.97438 * 4 3 2 6 6 C 1.38236 * 120.00028 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00172 * 179.97438 * 6 5 4 8 8 C 1.38233 * 119.99949 * 359.95897 * 6 5 4 9 9 C 1.50698 * 119.99990 * 180.02562 * 8 6 5 10 10 N 1.46905 * 109.47049 * 75.30771 * 9 8 6 11 11 C 1.46897 * 111.00083 * 200.93089 * 10 9 8 12 12 C 1.50697 * 109.47426 * 159.39035 * 11 10 9 13 13 H 1.08002 * 120.00045 * 354.55623 * 12 11 10 14 14 C 1.37878 * 120.00084 * 174.55122 * 12 11 10 15 15 N 1.31516 * 120.00248 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47107 * 60.00053 * 16 14 12 18 18 H 1.48500 * 109.47274 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47124 * 300.00120 * 16 14 12 20 20 C 1.46894 * 111.00354 * 76.97335 * 10 9 8 21 21 C 1.53003 * 117.49870 * 263.49483 * 20 10 9 22 22 C 1.52996 * 117.50265 * 194.87293 * 20 10 9 23 23 H 1.09006 * 109.46874 * 95.41526 * 1 2 3 24 24 H 1.09000 * 109.47009 * 215.41350 * 1 2 3 25 25 H 1.08997 * 109.46711 * 335.41299 * 1 2 3 26 26 H 1.08001 * 120.00045 * 0.24954 * 3 2 1 27 27 H 1.08001 * 119.99582 * 179.97438 * 4 3 2 28 28 H 1.07995 * 120.00218 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47065 * 90.00519 * 7 6 5 30 30 H 1.09000 * 109.47749 * 210.00339 * 7 6 5 31 31 H 1.08998 * 109.47130 * 330.00668 * 7 6 5 32 32 H 1.09001 * 109.47225 * 195.29937 * 9 8 6 33 33 H 1.08998 * 109.47558 * 315.30715 * 9 8 6 34 34 H 1.09007 * 109.47033 * 279.39417 * 11 10 9 35 35 H 1.09000 * 109.47208 * 39.38882 * 11 10 9 36 36 H 0.97001 * 120.00325 * 179.97438 * 15 14 12 37 37 H 1.09002 * 115.54932 * 49.19980 * 20 10 9 38 38 H 1.08995 * 117.49908 * 0.02562 * 21 20 10 39 39 H 1.09005 * 117.49758 * 145.01907 * 21 20 10 40 40 H 1.08996 * 117.50459 * 214.98321 * 22 20 10 41 41 H 1.09005 * 117.49955 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5805 -1.1972 0.0027 7 6 4.3340 -2.5023 0.0033 8 6 2.1982 -1.1972 0.0035 9 6 1.4447 -2.5023 0.0053 10 7 1.5049 -3.1006 1.3456 11 6 1.2390 -4.5443 1.2900 12 6 1.7874 -5.2042 2.5289 13 1 2.3601 -4.6270 3.2397 14 6 1.5579 -6.5448 2.7550 15 7 0.8608 -7.2478 1.8892 16 14 2.2383 -7.3630 4.2902 17 1 1.6820 -6.6957 5.4946 18 1 1.8556 -8.7978 4.2975 19 1 3.7187 -7.2460 4.2988 20 6 0.5759 -2.4292 2.2642 21 6 1.1435 -1.3298 3.1644 22 6 0.7558 -2.6838 3.7621 23 1 -0.3633 -0.0970 -1.0231 24 1 -0.3633 -0.8375 0.5955 25 1 -0.3633 0.9345 0.4276 26 1 1.6583 2.1325 0.0041 27 1 4.1206 2.1324 0.0001 28 1 5.3517 -0.0001 0.0016 29 1 4.5160 -2.8163 1.0311 30 1 3.7448 -3.2623 -0.5099 31 1 5.2862 -2.3723 -0.5109 32 1 0.4044 -2.3216 -0.2654 33 1 1.8952 -3.1829 -0.7171 34 1 0.1636 -4.7137 1.2338 35 1 1.7202 -4.9688 0.4089 36 1 0.6996 -8.1911 2.0481 37 1 -0.4414 -2.3017 1.8940 38 1 2.2062 -1.1046 3.0746 39 1 0.4997 -0.4787 3.3864 40 1 -0.1430 -2.7236 4.3774 41 1 1.5633 -3.3500 4.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096868849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = 49.362956 kcal Electronic energy + Delta-G solvation = -19961.730756 eV Core-core repulsion = 17228.079718 eV Total energy + Delta-G solvation = -2733.651038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59867 -37.31844 -33.87619 -33.22850 -32.77975 -31.20989 -27.90635 -26.61379 -26.26795 -24.35251 -22.20304 -21.49900 -20.60615 -20.32819 -19.30512 -16.64692 -15.77429 -15.61392 -14.92529 -14.69888 -14.22438 -14.06793 -13.91735 -13.13321 -12.81970 -12.75070 -12.61153 -12.40650 -12.14288 -12.03661 -11.67781 -11.31020 -11.23331 -11.07376 -10.92966 -10.76955 -10.66193 -10.50591 -10.37647 -9.91555 -9.52022 -9.15478 -9.11042 -8.38012 -8.21472 -8.16011 -7.24387 -5.98973 -3.98746 1.69739 1.74027 3.34459 3.38806 3.41414 4.03585 4.44981 4.65823 4.90159 5.10348 5.11703 5.26446 5.33154 5.36581 5.53586 5.64694 5.70101 5.75417 5.78482 5.84760 5.95876 6.00561 6.05684 6.11976 6.20835 6.29074 6.32322 6.36730 6.42502 6.49759 6.73315 6.76184 6.79400 6.89313 7.05095 7.12873 7.24283 7.38777 7.40552 7.87942 8.13820 8.24059 8.57031 9.07616 9.64025 11.11464 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.006087 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.126013 B = 4598.824789 C = 4886.715299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.123 4.123 5 C -0.135 4.135 6 C -0.055 4.055 7 C -0.108 4.108 8 C -0.060 4.060 9 C 0.089 3.911 10 N -0.500 5.500 11 C 0.196 3.804 12 C -0.495 4.495 13 H 0.066 0.934 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.030 3.970 21 C -0.177 4.177 22 C -0.157 4.157 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.077 0.923 34 H -0.003 1.003 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 14.198 -3.566 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.153 4.153 4 C -0.142 4.142 5 C -0.153 4.153 6 C -0.055 4.055 7 C -0.165 4.165 8 C -0.060 4.060 9 C -0.039 4.039 10 N -0.224 5.224 11 C 0.072 3.928 12 C -0.533 4.533 13 H 0.084 0.916 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.079 4.079 21 C -0.215 4.215 22 C -0.194 4.194 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.015 0.985 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.322 14.035 -3.425 14.632 hybrid contribution -0.519 -0.590 0.511 0.937 sum 1.803 13.446 -2.914 13.875 Atomic orbital electron populations 1.20901 0.91989 1.02720 1.01897 1.19679 0.95559 0.92615 0.99488 1.20845 0.94166 0.96977 1.03319 1.20941 0.94239 0.97496 1.01488 1.20934 0.99260 0.92164 1.02905 1.19767 0.93255 0.95237 0.97282 1.20754 0.98298 0.94150 1.03283 1.19632 0.93086 0.94348 0.98975 1.21059 0.97194 0.92722 0.92903 1.61864 1.49677 1.05607 1.05273 1.19746 0.95258 0.80100 0.97741 1.21157 1.32542 0.93522 1.06105 0.91593 1.24965 0.95551 0.97432 0.96699 1.69943 1.40326 1.08057 1.35805 0.86642 0.79441 0.78252 0.83560 1.20285 1.21497 1.20288 1.22040 0.93415 1.00903 0.91525 1.22922 1.01154 0.91887 1.05490 1.23067 1.03369 0.98115 0.94819 0.91787 0.90752 0.92199 0.86985 0.86955 0.86795 0.90144 0.91149 0.93063 0.94633 0.90472 0.98547 0.95820 0.93014 0.91593 0.89229 0.90586 0.90353 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.07 36.01 0.33 -1.21 16 2 C -0.07 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.13 -1.80 9.68 -39.59 -0.38 -2.19 16 4 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 5 C -0.13 -1.89 9.70 -39.59 -0.38 -2.28 16 6 C -0.05 -0.87 5.88 -104.63 -0.62 -1.49 16 7 C -0.11 -1.71 9.52 36.00 0.34 -1.37 16 8 C -0.06 -0.98 4.91 -104.63 -0.51 -1.49 16 9 C 0.09 1.60 4.16 -4.97 -0.02 1.58 16 10 N -0.50 -10.33 4.37 -229.52 -1.00 -11.33 16 11 C 0.20 4.91 4.77 -4.98 -0.02 4.88 16 12 C -0.49 -13.31 7.92 -34.44 -0.27 -13.58 16 13 H 0.07 1.76 5.80 -52.49 -0.30 1.46 16 14 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 15 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.03 0.59 3.60 -67.72 -0.24 0.34 16 21 C -0.18 -3.04 10.23 -26.73 -0.27 -3.32 16 22 C -0.16 -3.01 9.49 -26.74 -0.25 -3.27 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.06 4.44 -51.93 -0.23 0.83 16 25 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 26 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.18 6.23 -51.93 -0.32 0.86 16 31 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.04 0.62 5.86 -51.93 -0.30 0.31 16 33 H 0.08 1.41 6.08 -51.93 -0.32 1.10 16 34 H 0.00 -0.09 7.99 -51.92 -0.41 -0.51 16 35 H 0.02 0.63 7.57 -51.93 -0.39 0.24 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 1.25 6.96 -51.93 -0.36 0.89 16 38 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.11 2.47 5.58 -51.93 -0.29 2.18 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -28.47 324.67 -10.11 -38.59 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.29 Total: 2.76 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.43 Total: -25.67 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.27 Total: -36.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.47 -10.11 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096868849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.950 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds