Wall clock time and date at job start Mon Mar 30 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38234 * 120.00049 * 2 1 4 4 C 1.38232 * 119.99777 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00227 * 359.97438 * 4 3 2 6 6 C 1.38236 * 120.00028 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00172 * 179.97438 * 6 5 4 8 8 C 1.38233 * 119.99949 * 359.95897 * 6 5 4 9 9 C 1.50698 * 119.99990 * 180.02562 * 8 6 5 10 10 N 1.46905 * 109.47049 * 75.30771 * 9 8 6 11 11 C 1.46897 * 111.00083 * 200.93089 * 10 9 8 12 12 C 1.50697 * 109.47426 * 159.39035 * 11 10 9 13 13 H 1.08002 * 120.00045 * 354.55623 * 12 11 10 14 14 C 1.37878 * 120.00084 * 174.55122 * 12 11 10 15 15 N 1.31516 * 120.00248 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47107 * 60.00053 * 16 14 12 18 18 H 1.48500 * 109.47274 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47124 * 300.00120 * 16 14 12 20 20 C 1.46894 * 111.00354 * 76.97335 * 10 9 8 21 21 C 1.53003 * 117.49870 * 263.49483 * 20 10 9 22 22 C 1.52996 * 117.50265 * 194.87293 * 20 10 9 23 23 H 1.09006 * 109.46874 * 95.41526 * 1 2 3 24 24 H 1.09000 * 109.47009 * 215.41350 * 1 2 3 25 25 H 1.08997 * 109.46711 * 335.41299 * 1 2 3 26 26 H 1.08001 * 120.00045 * 0.24954 * 3 2 1 27 27 H 1.08001 * 119.99582 * 179.97438 * 4 3 2 28 28 H 1.07995 * 120.00218 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47065 * 90.00519 * 7 6 5 30 30 H 1.09000 * 109.47749 * 210.00339 * 7 6 5 31 31 H 1.08998 * 109.47130 * 330.00668 * 7 6 5 32 32 H 1.09001 * 109.47225 * 195.29937 * 9 8 6 33 33 H 1.08998 * 109.47558 * 315.30715 * 9 8 6 34 34 H 1.09007 * 109.47033 * 279.39417 * 11 10 9 35 35 H 1.09000 * 109.47208 * 39.38882 * 11 10 9 36 36 H 0.97001 * 120.00325 * 179.97438 * 15 14 12 37 37 H 1.09002 * 115.54932 * 49.19980 * 20 10 9 38 38 H 1.08995 * 117.49908 * 0.02562 * 21 20 10 39 39 H 1.09005 * 117.49758 * 145.01907 * 21 20 10 40 40 H 1.08996 * 117.50459 * 214.98321 * 22 20 10 41 41 H 1.09005 * 117.49955 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5805 -1.1972 0.0027 7 6 4.3340 -2.5023 0.0033 8 6 2.1982 -1.1972 0.0035 9 6 1.4447 -2.5023 0.0053 10 7 1.5049 -3.1006 1.3456 11 6 1.2390 -4.5443 1.2900 12 6 1.7874 -5.2042 2.5289 13 1 2.3601 -4.6270 3.2397 14 6 1.5579 -6.5448 2.7550 15 7 0.8608 -7.2478 1.8892 16 14 2.2383 -7.3630 4.2902 17 1 1.6820 -6.6957 5.4946 18 1 1.8556 -8.7978 4.2975 19 1 3.7187 -7.2460 4.2988 20 6 0.5759 -2.4292 2.2642 21 6 1.1435 -1.3298 3.1644 22 6 0.7558 -2.6838 3.7621 23 1 -0.3633 -0.0970 -1.0231 24 1 -0.3633 -0.8375 0.5955 25 1 -0.3633 0.9345 0.4276 26 1 1.6583 2.1325 0.0041 27 1 4.1206 2.1324 0.0001 28 1 5.3517 -0.0001 0.0016 29 1 4.5160 -2.8163 1.0311 30 1 3.7448 -3.2623 -0.5099 31 1 5.2862 -2.3723 -0.5109 32 1 0.4044 -2.3216 -0.2654 33 1 1.8952 -3.1829 -0.7171 34 1 0.1636 -4.7137 1.2338 35 1 1.7202 -4.9688 0.4089 36 1 0.6996 -8.1911 2.0481 37 1 -0.4414 -2.3017 1.8940 38 1 2.2062 -1.1046 3.0746 39 1 0.4997 -0.4787 3.3864 40 1 -0.1430 -2.7236 4.3774 41 1 1.5633 -3.3500 4.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096868849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:34 Heat of formation + Delta-G solvation = 34.959170 kcal Electronic energy + Delta-G solvation = -19962.355351 eV Core-core repulsion = 17228.079718 eV Total energy + Delta-G solvation = -2734.275633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80799 -38.82599 -35.46425 -34.66985 -34.33361 -32.67425 -29.50436 -28.10497 -27.40492 -25.83812 -24.12719 -22.98981 -21.91933 -21.43700 -20.81594 -18.59549 -17.04692 -16.94782 -16.58278 -16.38147 -15.59852 -15.53326 -15.27025 -14.51739 -14.41364 -14.01946 -13.82910 -13.69017 -13.66104 -13.33823 -13.22865 -13.04807 -12.73217 -12.58153 -12.42924 -12.34464 -12.26894 -11.91071 -11.68996 -11.51808 -11.17247 -11.07461 -10.69123 -10.50359 -9.36608 -9.29404 -8.94633 -8.13267 -6.20546 0.59110 0.62466 1.41782 1.43822 1.51219 2.42684 2.88759 3.12490 3.18889 3.38474 3.94572 4.01846 4.15308 4.19463 4.26049 4.29473 4.32619 4.54101 4.57005 4.63309 4.68778 4.80286 4.83824 4.90053 4.91856 4.95355 4.96578 5.08432 5.13965 5.17285 5.20961 5.38251 5.40110 5.49023 5.52029 5.71992 5.77752 5.80398 5.97796 6.13652 6.29761 6.46948 6.67772 6.94338 7.47052 8.96776 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.006087 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.126013 B = 4598.824789 C = 4886.715299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.075 4.075 7 C -0.102 4.102 8 C -0.080 4.080 9 C 0.094 3.906 10 N -0.500 5.500 11 C 0.213 3.787 12 C -0.499 4.499 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.938 5.938 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.271 1.271 20 C 0.014 3.986 21 C -0.138 4.138 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.133 0.867 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.061 0.939 34 H -0.036 1.036 35 H -0.002 1.002 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 17.058 -2.756 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.152 4.152 4 C -0.136 4.136 5 C -0.157 4.157 6 C -0.076 4.076 7 C -0.158 4.158 8 C -0.080 4.080 9 C -0.034 4.034 10 N -0.224 5.224 11 C 0.087 3.913 12 C -0.537 4.537 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.579 5.579 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.095 4.095 21 C -0.176 4.176 22 C -0.207 4.207 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.151 0.849 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.079 0.921 34 H -0.018 1.018 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.898 16.921 -2.613 17.366 hybrid contribution -0.688 -1.386 0.195 1.560 sum 2.210 15.536 -2.418 15.877 Atomic orbital electron populations 1.20905 0.90966 1.03145 1.02331 1.19888 0.96454 0.92456 0.99167 1.21197 0.94576 0.97406 1.01988 1.21342 0.94400 0.98280 0.99541 1.21180 1.00359 0.91786 1.02342 1.19867 0.93306 0.95810 0.98598 1.20644 0.99255 0.94108 1.01821 1.19491 0.93344 0.93809 1.01372 1.20999 0.97672 0.93622 0.91079 1.61798 1.50127 1.03259 1.07191 1.19372 0.92571 0.83200 0.96124 1.21425 1.32050 0.93828 1.06419 0.91569 1.25801 0.95865 0.98143 0.99740 1.70079 1.41794 1.08303 1.37771 0.85599 0.78930 0.77125 0.79964 1.19283 1.21259 1.19606 1.22132 0.93618 1.02510 0.91237 1.22847 1.00987 0.91591 1.02170 1.23028 1.03308 0.99440 0.94973 0.90985 0.92473 0.89926 0.84151 0.83787 0.84929 0.92363 0.93290 0.90726 0.94328 0.92067 1.01839 0.98391 0.93032 0.91248 0.90143 0.87486 0.88847 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.07 71.24 0.65 -2.12 16 2 C -0.08 -2.15 5.88 -19.86 -0.12 -2.26 16 3 C -0.13 -3.06 9.68 22.27 0.22 -2.84 16 4 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 5 C -0.14 -3.55 9.70 22.27 0.22 -3.34 16 6 C -0.08 -2.35 5.88 -19.87 -0.12 -2.47 16 7 C -0.10 -3.29 9.52 71.23 0.68 -2.61 16 8 C -0.08 -2.57 4.91 -19.87 -0.10 -2.67 16 9 C 0.09 3.51 4.16 85.56 0.36 3.87 16 10 N -0.50 -21.45 4.37 -880.07 -3.85 -25.29 16 11 C 0.21 11.29 4.77 85.56 0.41 11.70 16 12 C -0.50 -27.77 7.92 25.60 0.20 -27.57 16 13 H 0.07 3.63 5.80 -2.91 -0.02 3.62 16 14 C 0.00 0.09 5.46 84.65 0.46 0.56 16 15 N -0.94 -56.66 13.29 21.45 0.28 -56.37 16 16 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.01 0.54 3.60 44.92 0.16 0.70 16 21 C -0.14 -4.52 10.23 30.59 0.31 -4.20 16 22 C -0.17 -6.49 9.49 30.59 0.29 -6.20 16 23 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.06 1.55 4.44 -2.39 -0.01 1.54 16 25 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 26 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.75 6.23 -2.39 -0.01 1.74 16 31 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 32 H 0.04 1.40 5.86 -2.39 -0.01 1.38 16 33 H 0.06 2.43 6.08 -2.39 -0.01 2.41 16 34 H -0.04 -2.12 7.99 -2.38 -0.02 -2.14 16 35 H 0.00 -0.11 7.57 -2.39 -0.02 -0.13 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.07 2.64 6.96 -2.39 -0.02 2.62 16 38 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.09 3.83 5.58 -2.38 -0.01 3.82 16 Total: -1.00 -63.00 324.67 3.31 -59.69 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.01 Total: 17.25 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.84 Total: -41.84 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.56 Total: -81.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.00 3.31 -59.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096868849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.650 kcal (2) G-P(sol) polarization free energy of solvation -63.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds