Wall clock time and date at job start Mon Mar 30 2020 07:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46945 * 2 1 4 4 H 1.08997 * 109.46830 * 300.92438 * 3 2 1 5 5 C 1.50697 * 109.46955 * 180.92740 * 3 2 1 6 6 H 1.08003 * 120.00013 * 239.99956 * 5 3 2 7 7 C 1.37880 * 120.00411 * 59.99641 * 5 3 2 8 8 N 1.31510 * 119.99501 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00244 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47335 * 90.00062 * 9 7 5 11 11 H 1.48497 * 109.47621 * 210.00162 * 9 7 5 12 12 H 1.48507 * 109.47296 * 330.00408 * 9 7 5 13 13 N 1.46901 * 109.47196 * 60.92770 * 3 2 1 14 14 C 1.46434 * 111.00204 * 41.87003 * 13 3 2 15 15 C 1.53380 * 108.78602 * 72.18156 * 14 13 3 16 16 H 1.09003 * 109.76731 * 308.53117 * 15 14 13 17 17 C 1.53003 * 109.76438 * 187.80295 * 15 14 13 18 18 C 1.53037 * 107.94003 * 68.13829 * 15 14 13 19 19 C 1.50795 * 109.67267 * 312.72848 * 18 15 14 20 20 C 1.38610 * 118.13620 * 195.61663 * 19 18 15 21 21 C 1.38047 * 120.49381 * 180.25778 * 20 19 18 22 22 C 1.38311 * 119.88858 * 0.04051 * 21 20 19 23 23 C 1.37805 * 119.95401 * 359.85717 * 22 21 20 24 24 C 1.38378 * 122.00817 * 15.66248 * 19 18 15 25 25 H 1.09005 * 109.47118 * 184.66605 * 1 2 3 26 26 H 1.08990 * 109.47478 * 304.66423 * 1 2 3 27 27 H 1.08998 * 109.47002 * 64.67228 * 1 2 3 28 28 H 1.08993 * 109.47527 * 239.99724 * 2 1 3 29 29 H 1.09008 * 109.46822 * 119.99445 * 2 1 3 30 30 H 0.97002 * 120.00046 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.60854 * 312.34795 * 14 13 3 32 32 H 1.09000 * 109.60490 * 192.01855 * 14 13 3 33 33 H 1.08997 * 109.46992 * 60.00345 * 17 15 14 34 34 H 1.08999 * 109.47017 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.46709 * 299.99760 * 17 15 14 36 36 H 1.09005 * 109.43926 * 72.78717 * 18 15 14 37 37 H 1.08995 * 109.43904 * 192.66428 * 18 15 14 38 38 H 1.08002 * 119.75202 * 0.27186 * 20 19 18 39 39 H 1.08000 * 120.05938 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.02290 * 179.83748 * 22 21 20 41 41 H 1.07995 * 119.79460 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6631 1.9611 -0.8816 5 6 3.5468 1.4426 -0.0230 6 1 4.0991 1.9059 0.7812 7 6 4.2204 0.8512 -1.0706 8 7 3.5478 0.2874 -2.0501 9 14 6.0881 0.8519 -1.0994 10 1 6.5943 -0.3640 -0.4133 11 1 6.5615 0.8593 -2.5069 12 1 6.5935 2.0610 -0.4008 13 7 1.5687 2.1285 1.2105 14 6 1.6768 1.2579 2.3829 15 6 3.1578 1.1110 2.7541 16 1 3.7307 0.8161 1.8750 17 6 3.3139 0.0561 3.8513 18 6 3.6527 2.4665 3.2637 19 6 3.2100 3.5561 2.3198 20 6 3.8237 4.7950 2.4178 21 6 3.4525 5.8288 1.5816 22 6 2.4605 5.6301 0.6385 23 6 1.8471 4.4005 0.5337 24 6 2.2206 3.3503 1.3746 25 1 -0.3633 -1.0243 0.0836 26 1 -0.3634 0.5844 0.8452 27 1 -0.3633 0.4396 -0.9289 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.0216 -0.1284 -2.7873 31 1 1.2590 0.2783 2.1508 32 1 1.1324 1.6993 3.2177 33 1 2.9356 -0.9008 3.4917 34 1 4.3676 -0.0441 4.1116 35 1 2.7498 0.3620 4.7323 36 1 3.2390 2.6547 4.2544 37 1 4.7411 2.4569 3.3216 38 1 4.5983 4.9527 3.1537 39 1 3.9357 6.7911 1.6638 40 1 2.1665 6.4381 -0.0150 41 1 1.0731 4.2481 -0.2039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110265836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:30 Heat of formation + Delta-G solvation = 29.689386 kcal Electronic energy + Delta-G solvation = -20855.697866 eV Core-core repulsion = 18121.193718 eV Total energy + Delta-G solvation = -2734.504148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.16158 -36.87105 -34.46664 -32.61195 -31.48203 -30.59333 -28.63547 -27.14408 -25.99536 -24.13937 -23.04162 -21.40616 -21.06219 -19.68845 -18.34646 -16.56034 -16.28704 -15.43258 -14.97392 -14.46065 -13.94582 -13.74673 -13.34920 -12.99739 -12.83777 -12.70738 -12.34477 -12.08640 -11.77790 -11.50952 -11.33404 -11.28798 -11.14048 -11.05309 -10.79553 -10.67353 -10.52833 -10.36377 -10.07689 -9.79300 -9.64590 -9.31942 -8.91968 -8.42766 -8.23575 -7.96788 -6.90133 -6.03432 -4.13421 2.10461 2.18952 3.24417 3.32526 3.37298 4.36331 4.46910 4.98934 5.19644 5.35263 5.43942 5.56573 5.61784 5.70988 5.88493 6.02231 6.02943 6.14913 6.19818 6.23760 6.26766 6.30440 6.36527 6.43359 6.52972 6.60200 6.65001 6.67308 6.78690 6.95238 7.03091 7.09111 7.17179 7.20004 7.32096 7.35869 7.54700 7.67424 7.72245 7.95524 8.04724 8.33353 8.50876 8.92353 9.50724 10.95616 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.010672 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.747366 B = 2623.152288 C = 2989.113659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.223 3.777 4 H 0.043 0.957 5 C -0.543 4.543 6 H 0.076 0.924 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.505 5.505 14 C 0.065 3.935 15 C -0.160 4.160 16 H 0.134 0.866 17 C -0.137 4.137 18 C -0.063 4.063 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.158 4.158 22 C -0.113 4.113 23 C -0.124 4.124 24 C 0.171 3.829 25 H 0.029 0.971 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.261 0.739 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 3.408 7.794 8.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.120 3.880 4 H 0.061 0.939 5 C -0.581 4.581 6 H 0.094 0.906 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.220 5.220 14 C -0.063 4.063 15 C -0.179 4.179 16 H 0.152 0.848 17 C -0.195 4.195 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.177 4.177 22 C -0.132 4.132 23 C -0.144 4.144 24 C 0.074 3.926 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.354 3.342 7.514 8.554 hybrid contribution 1.942 -0.118 -0.023 1.946 sum -0.412 3.224 7.491 8.166 Atomic orbital electron populations 1.21822 0.98730 0.98845 1.00921 1.21835 0.92295 0.99137 1.02773 1.19387 0.93067 0.90175 0.85413 0.93922 1.21971 0.92096 1.36762 1.07276 0.90587 1.24888 0.97961 0.95083 0.95312 1.69867 1.35126 1.37046 1.10121 0.86728 0.86333 0.78539 0.77407 1.20628 1.21162 1.19761 1.59277 1.53804 1.02991 1.05945 1.22190 0.94640 0.97870 0.91628 1.22518 1.00020 0.93832 1.01504 0.84849 1.21719 1.00614 0.99017 0.98126 1.20440 0.99949 0.93213 0.96420 1.19845 0.96502 0.95243 1.00889 1.20796 0.99712 0.92919 0.99403 1.20743 1.00033 0.98567 0.98347 1.20784 0.97107 0.96857 0.98456 1.20922 1.01153 0.92111 1.00211 1.18372 0.89742 0.91296 0.93227 0.95235 0.93175 0.93942 0.88528 0.93915 0.92857 0.89542 0.93105 0.92897 0.93479 0.93868 0.92267 0.91880 0.87488 0.87400 0.87102 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.42 37.16 0.35 -2.45 16 2 C -0.12 -2.72 4.66 -26.73 -0.12 -2.84 16 3 C 0.22 5.24 1.82 -68.86 -0.13 5.11 16 4 H 0.04 1.14 8.07 -51.93 -0.42 0.72 16 5 C -0.54 -13.77 5.67 -34.44 -0.20 -13.97 16 6 H 0.08 1.95 4.10 -52.48 -0.22 1.74 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.01 11.31 55.43 0.63 -23.38 16 9 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.51 -10.58 4.05 -165.03 -0.67 -11.25 16 14 C 0.06 1.21 4.12 -3.88 -0.02 1.19 16 15 C -0.16 -2.94 2.32 -90.40 -0.21 -3.15 16 16 H 0.13 2.94 4.27 -51.93 -0.22 2.71 16 17 C -0.14 -2.08 9.20 37.16 0.34 -1.74 16 18 C -0.06 -1.11 4.88 -27.82 -0.14 -1.25 16 19 C -0.12 -2.38 4.74 -104.39 -0.50 -2.87 16 20 C -0.11 -1.95 9.63 -39.51 -0.38 -2.33 16 21 C -0.16 -2.68 10.05 -39.62 -0.40 -3.08 16 22 C -0.11 -2.00 10.03 -39.71 -0.40 -2.39 16 23 C -0.12 -2.47 9.52 -39.22 -0.37 -2.85 16 24 C 0.17 3.58 4.04 -83.83 -0.34 3.24 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.93 6.68 -51.93 -0.35 0.58 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 2.42 6.05 -51.93 -0.31 2.11 16 29 H 0.04 0.92 5.96 -51.92 -0.31 0.62 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.09 1.61 4.67 -51.93 -0.24 1.37 16 32 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -26.45 306.99 -9.30 -35.75 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.27 Total: 6.02 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -2.59 Total: -27.60 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.04 Total: -34.63 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.45 -9.30 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110265836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.442 kcal (2) G-P(sol) polarization free energy of solvation -26.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds