Wall clock time and date at job start Mon Mar 30 2020 07:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46945 * 2 1 4 4 H 1.08997 * 109.46830 * 300.92438 * 3 2 1 5 5 C 1.50697 * 109.46955 * 180.92740 * 3 2 1 6 6 H 1.08003 * 120.00013 * 239.99956 * 5 3 2 7 7 C 1.37880 * 120.00411 * 59.99641 * 5 3 2 8 8 N 1.31510 * 119.99501 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00244 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47335 * 90.00062 * 9 7 5 11 11 H 1.48497 * 109.47621 * 210.00162 * 9 7 5 12 12 H 1.48507 * 109.47296 * 330.00408 * 9 7 5 13 13 N 1.46901 * 109.47196 * 60.92770 * 3 2 1 14 14 C 1.46434 * 111.00204 * 41.87003 * 13 3 2 15 15 C 1.53380 * 108.78602 * 72.18156 * 14 13 3 16 16 H 1.09003 * 109.76731 * 308.53117 * 15 14 13 17 17 C 1.53003 * 109.76438 * 187.80295 * 15 14 13 18 18 C 1.53037 * 107.94003 * 68.13829 * 15 14 13 19 19 C 1.50795 * 109.67267 * 312.72848 * 18 15 14 20 20 C 1.38610 * 118.13620 * 195.61663 * 19 18 15 21 21 C 1.38047 * 120.49381 * 180.25778 * 20 19 18 22 22 C 1.38311 * 119.88858 * 0.04051 * 21 20 19 23 23 C 1.37805 * 119.95401 * 359.85717 * 22 21 20 24 24 C 1.38378 * 122.00817 * 15.66248 * 19 18 15 25 25 H 1.09005 * 109.47118 * 184.66605 * 1 2 3 26 26 H 1.08990 * 109.47478 * 304.66423 * 1 2 3 27 27 H 1.08998 * 109.47002 * 64.67228 * 1 2 3 28 28 H 1.08993 * 109.47527 * 239.99724 * 2 1 3 29 29 H 1.09008 * 109.46822 * 119.99445 * 2 1 3 30 30 H 0.97002 * 120.00046 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.60854 * 312.34795 * 14 13 3 32 32 H 1.09000 * 109.60490 * 192.01855 * 14 13 3 33 33 H 1.08997 * 109.46992 * 60.00345 * 17 15 14 34 34 H 1.08999 * 109.47017 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.46709 * 299.99760 * 17 15 14 36 36 H 1.09005 * 109.43926 * 72.78717 * 18 15 14 37 37 H 1.08995 * 109.43904 * 192.66428 * 18 15 14 38 38 H 1.08002 * 119.75202 * 0.27186 * 20 19 18 39 39 H 1.08000 * 120.05938 * 180.02562 * 21 20 19 40 40 H 1.08003 * 120.02290 * 179.83748 * 22 21 20 41 41 H 1.07995 * 119.79460 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6631 1.9611 -0.8816 5 6 3.5468 1.4426 -0.0230 6 1 4.0991 1.9059 0.7812 7 6 4.2204 0.8512 -1.0706 8 7 3.5478 0.2874 -2.0501 9 14 6.0881 0.8519 -1.0994 10 1 6.5943 -0.3640 -0.4133 11 1 6.5615 0.8593 -2.5069 12 1 6.5935 2.0610 -0.4008 13 7 1.5687 2.1285 1.2105 14 6 1.6768 1.2579 2.3829 15 6 3.1578 1.1110 2.7541 16 1 3.7307 0.8161 1.8750 17 6 3.3139 0.0561 3.8513 18 6 3.6527 2.4665 3.2637 19 6 3.2100 3.5561 2.3198 20 6 3.8237 4.7950 2.4178 21 6 3.4525 5.8288 1.5816 22 6 2.4605 5.6301 0.6385 23 6 1.8471 4.4005 0.5337 24 6 2.2206 3.3503 1.3746 25 1 -0.3633 -1.0243 0.0836 26 1 -0.3634 0.5844 0.8452 27 1 -0.3633 0.4396 -0.9289 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.0216 -0.1284 -2.7873 31 1 1.2590 0.2783 2.1508 32 1 1.1324 1.6993 3.2177 33 1 2.9356 -0.9008 3.4917 34 1 4.3676 -0.0441 4.1116 35 1 2.7498 0.3620 4.7323 36 1 3.2390 2.6547 4.2544 37 1 4.7411 2.4569 3.3216 38 1 4.5983 4.9527 3.1537 39 1 3.9357 6.7911 1.6638 40 1 2.1665 6.4381 -0.0150 41 1 1.0731 4.2481 -0.2039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110265836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:29 Heat of formation + Delta-G solvation = 17.297106 kcal Electronic energy + Delta-G solvation = -20856.235235 eV Core-core repulsion = 18121.193718 eV Total energy + Delta-G solvation = -2735.041518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.68270 -38.37148 -36.02321 -34.40984 -33.16502 -31.99400 -30.10769 -28.98899 -27.31553 -25.77959 -24.71433 -22.91330 -22.48278 -21.37147 -19.91773 -18.39176 -17.88343 -16.94305 -16.44137 -16.29603 -15.51761 -15.17626 -14.96909 -14.58567 -14.35141 -14.15456 -13.80089 -13.55824 -13.33552 -13.08055 -13.01492 -12.83384 -12.75259 -12.65160 -12.42331 -12.28378 -12.07707 -11.99303 -11.65098 -11.50857 -11.25869 -10.95984 -10.66022 -10.36850 -9.82882 -9.39764 -8.53265 -7.97422 -6.16307 0.67206 0.73702 1.35057 1.38826 1.46272 2.41120 3.00105 3.18457 3.46930 3.98517 4.05046 4.17836 4.28249 4.36442 4.51997 4.58233 4.64156 4.68459 4.73628 4.82316 4.84538 4.86059 4.91902 4.95273 5.06986 5.19010 5.21994 5.23766 5.33783 5.38410 5.42275 5.49226 5.64371 5.70961 5.74911 5.78801 5.83445 5.87895 6.09273 6.16040 6.27256 6.49459 6.89043 7.01621 7.49117 8.95030 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.010672 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.747366 B = 2623.152288 C = 2989.113659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.233 3.767 4 H 0.000 1.000 5 C -0.535 4.535 6 H 0.074 0.926 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.933 3.067 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.508 5.508 14 C 0.065 3.935 15 C -0.158 4.158 16 H 0.096 0.904 17 C -0.130 4.130 18 C -0.060 4.060 19 C -0.137 4.137 20 C -0.117 4.117 21 C -0.153 4.153 22 C -0.117 4.117 23 C -0.149 4.149 24 C 0.139 3.861 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.259 0.741 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 4.288 9.917 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 C 0.129 3.871 4 H 0.018 0.982 5 C -0.573 4.573 6 H 0.092 0.908 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.760 3.240 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.223 5.223 14 C -0.062 4.062 15 C -0.177 4.177 16 H 0.113 0.887 17 C -0.188 4.188 18 C -0.097 4.097 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.172 4.172 22 C -0.135 4.135 23 C -0.169 4.169 24 C 0.042 3.958 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.639 4.231 9.656 10.669 hybrid contribution 1.706 -0.283 -0.651 1.848 sum 0.067 3.948 9.005 9.832 Atomic orbital electron populations 1.21693 0.96361 1.00345 1.00772 1.21651 0.94354 0.97916 1.01349 1.19053 0.92065 0.90532 0.85424 0.98214 1.22192 0.93169 1.35332 1.06626 0.90809 1.25506 1.01151 0.95517 0.95443 1.69995 1.36114 1.38331 1.10687 0.85926 0.82630 0.78402 0.77018 1.19966 1.21428 1.20013 1.59156 1.54163 1.03342 1.05682 1.22246 0.95364 0.97442 0.91174 1.22332 0.98848 0.95380 1.01139 0.88665 1.21656 1.01600 0.97859 0.97702 1.20467 1.00233 0.92052 0.96994 1.20164 0.96262 0.96688 1.00898 1.21192 0.99935 0.92397 0.99992 1.21187 0.99097 0.99850 0.97041 1.21125 0.96860 0.96574 0.98949 1.21089 1.01853 0.93434 1.00493 1.18599 0.91275 0.91203 0.94701 0.92985 0.92363 0.94843 0.91606 0.93493 0.93183 0.89717 0.91661 0.92985 0.92648 0.91723 0.89979 0.91441 0.84790 0.83952 0.84533 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.42 71.98 0.68 -4.48 16 2 C -0.11 -5.20 4.66 30.60 0.14 -5.06 16 3 C 0.23 11.34 1.82 44.17 0.08 11.42 16 4 H 0.00 0.00 8.07 -2.39 -0.02 -0.02 16 5 C -0.53 -27.70 5.67 25.60 0.15 -27.56 16 6 H 0.07 3.82 4.10 -2.91 -0.01 3.81 16 7 C 0.02 1.26 5.30 84.66 0.45 1.71 16 8 N -0.91 -51.22 11.31 21.45 0.24 -50.98 16 9 Si 0.93 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.51 -21.48 4.05 -676.05 -2.74 -24.22 16 14 C 0.07 2.38 4.12 86.52 0.36 2.74 16 15 C -0.16 -5.58 2.32 -10.65 -0.02 -5.60 16 16 H 0.10 4.17 4.27 -2.39 -0.01 4.16 16 17 C -0.13 -3.65 9.20 71.98 0.66 -2.98 16 18 C -0.06 -1.99 4.88 29.89 0.15 -1.85 16 19 C -0.14 -5.14 4.74 -19.71 -0.09 -5.23 16 20 C -0.12 -3.82 9.63 22.31 0.21 -3.60 16 21 C -0.15 -4.74 10.05 22.24 0.22 -4.51 16 22 C -0.12 -3.93 10.03 22.18 0.22 -3.71 16 23 C -0.15 -5.98 9.52 22.50 0.21 -5.77 16 24 C 0.14 5.80 4.04 38.30 0.15 5.96 16 25 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.06 2.12 6.68 -2.39 -0.02 2.11 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 3.42 6.05 -2.39 -0.01 3.41 16 29 H 0.05 2.05 5.96 -2.38 -0.01 2.04 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.26 16 31 H 0.08 3.08 4.67 -2.39 -0.01 3.07 16 32 H 0.06 2.19 8.11 -2.39 -0.02 2.17 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 2.32 8.09 -2.38 -0.02 2.30 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 41 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -58.07 306.99 4.10 -53.97 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.00 Total: 24.39 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 3.57 Total: -48.53 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.50 Total: -75.20 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -58.07 4.10 -53.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110265836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.262 kcal (2) G-P(sol) polarization free energy of solvation -58.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds