Wall clock time and date at job start Mon Mar 30 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47188 * 2 1 4 4 H 1.09004 * 110.43500 * 54.29583 * 3 2 1 5 5 C 1.54267 * 110.48628 * 291.76087 * 3 2 1 6 6 C 1.53872 * 106.59678 * 217.57839 * 5 3 2 7 7 C 1.54267 * 106.60129 * 359.97438 * 6 5 3 8 8 C 1.54888 * 110.59975 * 176.91652 * 3 2 1 9 9 H 1.08999 * 110.75510 * 38.36237 * 8 3 2 10 10 N 1.46506 * 110.75603 * 274.99121 * 8 3 2 11 11 C 1.38850 * 120.00068 * 155.00082 * 10 8 3 12 12 C 1.39569 * 119.84426 * 359.72422 * 11 10 8 13 13 C 1.36333 * 120.16317 * 179.75696 * 12 11 10 14 14 C 1.40890 * 119.83884 * 0.53878 * 13 12 11 15 15 C 1.41136 * 120.15729 * 179.73369 * 14 13 12 16 16 H 1.07997 * 119.99527 * 150.10607 * 15 14 13 17 17 C 1.39855 * 120.00185 * 330.10989 * 15 14 13 18 18 N 1.30911 * 120.00091 * 161.72389 * 17 15 14 19 19 Si 1.86798 * 120.00273 * 341.72860 * 17 15 14 20 20 H 1.48490 * 109.47511 * 95.41332 * 19 17 15 21 21 H 1.48508 * 109.47054 * 215.41608 * 19 17 15 22 22 H 1.48503 * 109.47134 * 335.41165 * 19 17 15 23 23 C 1.40889 * 119.68273 * 359.71541 * 14 13 12 24 24 C 1.36342 * 119.83978 * 0.02562 * 23 14 13 25 25 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47154 * 300.00140 * 1 2 3 27 27 H 1.09000 * 109.46741 * 60.00051 * 1 2 3 28 28 H 1.08998 * 109.47518 * 240.00262 * 2 1 3 29 29 H 1.09006 * 109.47370 * 119.99724 * 2 1 3 30 30 H 1.08999 * 110.02754 * 336.85621 * 5 3 2 31 31 H 1.08999 * 110.03434 * 98.24038 * 5 3 2 32 32 H 1.08999 * 110.03496 * 119.28018 * 6 5 3 33 33 H 1.08999 * 110.03606 * 240.71134 * 6 5 3 34 34 H 1.08997 * 110.48733 * 142.28520 * 7 6 5 35 35 H 1.08994 * 110.48677 * 264.93551 * 7 6 5 36 36 H 0.96998 * 119.99857 * 335.00017 * 10 8 3 37 37 H 1.08005 * 119.91595 * 0.02562 * 12 11 10 38 38 H 1.08006 * 120.08209 * 180.23279 * 13 12 11 39 39 H 0.96996 * 120.00065 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07468 * 180.02562 * 23 14 13 41 41 H 1.07991 * 119.91793 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6049 2.0001 0.8295 5 6 1.7149 2.1302 -1.3421 6 6 2.9176 3.0293 -1.6780 7 6 3.9313 2.8571 -0.5280 8 6 3.5866 1.4737 0.0780 9 1 4.0197 0.6713 -0.5191 10 7 4.0381 1.3895 1.4692 11 6 5.3005 0.8900 1.7604 12 6 6.1344 0.4636 0.7256 13 6 7.3771 -0.0234 1.0037 14 6 7.8145 -0.1063 2.3404 15 6 9.0974 -0.6146 2.6364 16 1 9.6287 -0.2647 3.5091 17 6 9.6808 -1.5713 1.7995 18 7 10.9719 -1.7823 1.8468 19 14 8.6177 -2.5479 0.6140 20 1 8.6381 -1.8972 -0.7205 21 1 9.1469 -3.9307 0.4986 22 1 7.2228 -2.5926 1.1217 23 6 6.9652 0.3210 3.3802 24 6 5.7271 0.8108 3.0869 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5794 1.3810 -2.1222 31 1 0.8126 2.7336 -1.2436 32 1 3.3657 2.7165 -2.6211 33 1 2.5995 4.0698 -1.7423 34 1 4.9506 2.8607 -0.9142 35 1 3.8014 3.6432 0.2158 36 1 3.4552 1.6827 2.1869 37 1 5.7961 0.5237 -0.2983 38 1 8.0227 -0.3495 0.2017 39 1 11.3764 -2.4461 1.2666 40 1 7.2942 0.2607 4.4071 41 1 5.0749 1.1383 3.8829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163924032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:52 Heat of formation + Delta-G solvation = -3.723482 kcal Electronic energy + Delta-G solvation = -19217.474878 eV Core-core repulsion = 16481.521839 eV Total energy + Delta-G solvation = -2735.953039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.20675 -37.67777 -34.43123 -33.19058 -32.67759 -29.93847 -29.35988 -27.60394 -27.01290 -23.95859 -22.65466 -21.81866 -20.67589 -19.68241 -19.55143 -17.32658 -16.60364 -15.99700 -15.20419 -14.86375 -14.42258 -13.96239 -13.71768 -13.38055 -13.10482 -13.07941 -12.68342 -12.48878 -12.24979 -12.17061 -11.92043 -11.78015 -11.42885 -11.14676 -10.92494 -10.71161 -10.61494 -10.49671 -10.42463 -10.37901 -10.17131 -9.89830 -9.43100 -9.14951 -8.65605 -7.74494 -6.74157 -6.55473 -4.13840 2.72864 2.83342 3.21211 3.31370 3.42964 4.12674 4.15094 4.54608 4.60201 4.71841 4.81848 5.09381 5.19706 5.29937 5.48876 5.49272 5.55634 5.56907 5.64991 5.71027 5.79603 5.91642 5.94593 5.98637 6.04282 6.07853 6.11359 6.22505 6.29500 6.36744 6.42054 6.58162 6.74864 6.94310 7.18883 7.27704 7.50030 7.62265 7.97389 8.10065 8.36409 8.52468 8.61872 8.87922 9.01927 10.30469 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026662 B = 0.004952 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.927197 B = 5652.413504 C = 5771.026279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.098 4.098 4 H 0.074 0.926 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.141 4.141 8 C 0.162 3.838 9 H 0.081 0.919 10 N -0.750 5.750 11 C 0.096 3.904 12 C -0.145 4.145 13 C -0.197 4.197 14 C 0.059 3.941 15 C -0.456 4.456 16 H 0.085 0.915 17 C 0.083 3.917 18 N -0.826 5.826 19 Si 0.907 3.093 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.246 1.246 23 C -0.168 4.168 24 C -0.148 4.148 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.385 0.615 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.280 0.720 40 H 0.100 0.900 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.468 5.120 -5.952 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.117 4.117 4 H 0.092 0.908 5 C -0.154 4.154 6 C -0.162 4.162 7 C -0.181 4.181 8 C 0.055 3.945 9 H 0.099 0.901 10 N -0.383 5.383 11 C -0.002 4.002 12 C -0.167 4.167 13 C -0.217 4.217 14 C 0.055 3.945 15 C -0.486 4.486 16 H 0.103 0.897 17 C -0.133 4.133 18 N -0.452 5.452 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.222 1.222 22 H -0.170 1.170 23 C -0.188 4.188 24 C -0.170 4.170 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.218 0.782 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.180 4.961 -6.167 18.916 hybrid contribution -0.445 -0.330 -0.348 0.654 sum -17.626 4.632 -6.515 19.354 Atomic orbital electron populations 1.21778 0.96173 1.01292 1.01511 1.21544 0.95351 0.96051 1.02446 1.22242 0.95629 0.96059 0.97766 0.90806 1.22141 0.97919 0.98519 0.96834 1.22083 0.95991 0.99390 0.98750 1.22877 0.98996 0.98789 0.97432 1.21668 0.92203 0.96183 0.84496 0.90131 1.43856 1.15522 1.74084 1.04878 1.17304 0.86360 1.03430 0.93058 1.19980 0.95201 1.05416 0.96102 1.20643 0.96786 1.08016 0.96274 1.17635 0.93003 0.93169 0.90688 1.19269 0.98886 1.20307 1.10150 0.89660 1.26032 0.94693 0.96752 0.95782 1.69746 1.11015 1.29355 1.35072 0.86392 0.82344 0.77575 0.80273 1.20062 1.22191 1.16965 1.20615 0.93698 1.06684 0.97803 1.19965 0.97508 1.06225 0.93260 0.93039 0.92980 0.92879 0.92050 0.91539 0.91754 0.92090 0.92001 0.92193 0.91570 0.91592 0.78193 0.88873 0.88346 0.90973 0.88223 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.77 37.16 0.36 -0.98 16 2 C -0.12 -1.26 5.33 -26.73 -0.14 -1.40 16 3 C -0.10 -1.07 2.49 -88.96 -0.22 -1.29 16 4 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 5 C -0.12 -1.12 5.59 -25.61 -0.14 -1.26 16 6 C -0.12 -1.28 6.80 -25.61 -0.17 -1.46 16 7 C -0.14 -1.82 6.51 -25.06 -0.16 -1.98 16 8 C 0.16 2.23 2.40 -65.92 -0.16 2.07 16 9 H 0.08 1.24 6.25 -51.93 -0.32 0.91 16 10 N -0.75 -11.95 5.32 -50.10 -0.27 -12.21 16 11 C 0.10 1.94 6.67 -83.69 -0.56 1.38 16 12 C -0.15 -3.18 9.15 -39.77 -0.36 -3.54 16 13 C -0.20 -4.88 7.11 -39.26 -0.28 -5.16 16 14 C 0.06 1.52 5.10 -106.79 -0.55 0.98 16 15 C -0.46 -12.82 9.55 -37.88 -0.36 -13.18 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 17 C 0.08 2.28 5.40 -17.34 -0.09 2.19 16 18 N -0.83 -23.08 13.93 55.54 0.77 -22.30 16 19 Si 0.91 21.71 24.51 -169.99 -4.17 17.54 16 20 H -0.27 -6.38 6.70 56.52 0.38 -6.00 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.25 -6.03 6.87 56.52 0.39 -5.64 16 23 C -0.17 -3.97 9.74 -39.26 -0.38 -4.35 16 24 C -0.15 -3.09 9.82 -39.77 -0.39 -3.49 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.44 7.55 -51.93 -0.39 0.04 16 28 H 0.06 0.67 8.01 -51.93 -0.42 0.26 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.60 7.74 -51.93 -0.40 0.19 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.39 5.48 8.57 -40.82 -0.35 5.13 16 37 H 0.09 1.85 6.14 -52.48 -0.32 1.53 16 38 H 0.10 2.46 4.73 -52.48 -0.25 2.21 16 39 H 0.28 7.13 8.30 -40.82 -0.34 6.79 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -28.10 320.51 -9.14 -37.24 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.69 Total: 6.39 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -3.61 Total: -31.48 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.51 Total: -34.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.17 Total: 17.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.10 -9.14 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163924032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.517 kcal (2) G-P(sol) polarization free energy of solvation -28.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds