Wall clock time and date at job start Mon Mar 30 2020 07:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47188 * 2 1 4 4 H 1.09004 * 110.43500 * 54.29583 * 3 2 1 5 5 C 1.54267 * 110.48628 * 291.76087 * 3 2 1 6 6 C 1.53872 * 106.59678 * 217.57839 * 5 3 2 7 7 C 1.54267 * 106.60129 * 359.97438 * 6 5 3 8 8 C 1.54888 * 110.59975 * 176.91652 * 3 2 1 9 9 H 1.08999 * 110.75510 * 38.36237 * 8 3 2 10 10 N 1.46506 * 110.75603 * 274.99121 * 8 3 2 11 11 C 1.38850 * 120.00068 * 155.00082 * 10 8 3 12 12 C 1.39569 * 119.84426 * 359.72422 * 11 10 8 13 13 C 1.36333 * 120.16317 * 179.75696 * 12 11 10 14 14 C 1.40890 * 119.83884 * 0.53878 * 13 12 11 15 15 C 1.41136 * 120.15729 * 179.73369 * 14 13 12 16 16 H 1.07997 * 119.99527 * 150.10607 * 15 14 13 17 17 C 1.39855 * 120.00185 * 330.10989 * 15 14 13 18 18 N 1.30911 * 120.00091 * 161.72389 * 17 15 14 19 19 Si 1.86798 * 120.00273 * 341.72860 * 17 15 14 20 20 H 1.48490 * 109.47511 * 95.41332 * 19 17 15 21 21 H 1.48508 * 109.47054 * 215.41608 * 19 17 15 22 22 H 1.48503 * 109.47134 * 335.41165 * 19 17 15 23 23 C 1.40889 * 119.68273 * 359.71541 * 14 13 12 24 24 C 1.36342 * 119.83978 * 0.02562 * 23 14 13 25 25 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47154 * 300.00140 * 1 2 3 27 27 H 1.09000 * 109.46741 * 60.00051 * 1 2 3 28 28 H 1.08998 * 109.47518 * 240.00262 * 2 1 3 29 29 H 1.09006 * 109.47370 * 119.99724 * 2 1 3 30 30 H 1.08999 * 110.02754 * 336.85621 * 5 3 2 31 31 H 1.08999 * 110.03434 * 98.24038 * 5 3 2 32 32 H 1.08999 * 110.03496 * 119.28018 * 6 5 3 33 33 H 1.08999 * 110.03606 * 240.71134 * 6 5 3 34 34 H 1.08997 * 110.48733 * 142.28520 * 7 6 5 35 35 H 1.08994 * 110.48677 * 264.93551 * 7 6 5 36 36 H 0.96998 * 119.99857 * 335.00017 * 10 8 3 37 37 H 1.08005 * 119.91595 * 0.02562 * 12 11 10 38 38 H 1.08006 * 120.08209 * 180.23279 * 13 12 11 39 39 H 0.96996 * 120.00065 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07468 * 180.02562 * 23 14 13 41 41 H 1.07991 * 119.91793 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6049 2.0001 0.8295 5 6 1.7149 2.1302 -1.3421 6 6 2.9176 3.0293 -1.6780 7 6 3.9313 2.8571 -0.5280 8 6 3.5866 1.4737 0.0780 9 1 4.0197 0.6713 -0.5191 10 7 4.0381 1.3895 1.4692 11 6 5.3005 0.8900 1.7604 12 6 6.1344 0.4636 0.7256 13 6 7.3771 -0.0234 1.0037 14 6 7.8145 -0.1063 2.3404 15 6 9.0974 -0.6146 2.6364 16 1 9.6287 -0.2647 3.5091 17 6 9.6808 -1.5713 1.7995 18 7 10.9719 -1.7823 1.8468 19 14 8.6177 -2.5479 0.6140 20 1 8.6381 -1.8972 -0.7205 21 1 9.1469 -3.9307 0.4986 22 1 7.2228 -2.5926 1.1217 23 6 6.9652 0.3210 3.3802 24 6 5.7271 0.8108 3.0869 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5794 1.3810 -2.1222 31 1 0.8126 2.7336 -1.2436 32 1 3.3657 2.7165 -2.6211 33 1 2.5995 4.0698 -1.7423 34 1 4.9506 2.8607 -0.9142 35 1 3.8014 3.6432 0.2158 36 1 3.4552 1.6827 2.1869 37 1 5.7961 0.5237 -0.2983 38 1 8.0227 -0.3495 0.2017 39 1 11.3764 -2.4461 1.2666 40 1 7.2942 0.2607 4.4071 41 1 5.0749 1.1383 3.8829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163924032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:51 Heat of formation + Delta-G solvation = -18.645296 kcal Electronic energy + Delta-G solvation = -19218.121936 eV Core-core repulsion = 16481.521839 eV Total energy + Delta-G solvation = -2736.600097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.47057 -39.19663 -36.06958 -34.61099 -33.91177 -31.72031 -31.06994 -28.46173 -28.28733 -25.69647 -23.77263 -23.30795 -22.20801 -20.94008 -20.57217 -19.30724 -18.17272 -17.18857 -16.78782 -16.17352 -15.63681 -15.43384 -15.10171 -14.68615 -14.38588 -14.37163 -14.26428 -13.87900 -13.82035 -13.70279 -13.31464 -12.72695 -12.59162 -12.56894 -12.28490 -12.07252 -12.00390 -11.85752 -11.67127 -11.44472 -11.31695 -11.28939 -11.20573 -10.97048 -10.36765 -9.56808 -8.76846 -8.25810 -6.16682 0.88216 0.97415 1.27355 1.42164 1.50798 2.17820 2.71111 2.83824 3.59115 3.64169 3.78701 3.90566 4.25120 4.29253 4.33314 4.39738 4.49526 4.55837 4.62515 4.72471 4.74573 4.78261 4.83479 4.95354 5.02400 5.08861 5.10482 5.15853 5.23657 5.24669 5.29615 5.35982 5.41703 5.45222 5.52499 5.58781 5.68851 5.78543 6.00598 6.26220 6.44439 6.70025 6.91700 7.00007 7.25021 8.33990 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026662 B = 0.004952 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.927197 B = 5652.413504 C = 5771.026279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.088 4.088 4 H 0.082 0.918 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.140 4.140 8 C 0.151 3.849 9 H 0.067 0.933 10 N -0.738 5.738 11 C 0.129 3.871 12 C -0.161 4.161 13 C -0.201 4.201 14 C 0.025 3.975 15 C -0.491 4.491 16 H 0.049 0.951 17 C 0.043 3.957 18 N -0.871 5.871 19 Si 0.962 3.038 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.255 1.255 23 C -0.170 4.170 24 C -0.154 4.154 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.287 0.713 40 H 0.102 0.898 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.531 6.112 -7.315 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.107 4.107 4 H 0.101 0.899 5 C -0.149 4.149 6 C -0.157 4.157 7 C -0.180 4.180 8 C 0.045 3.955 9 H 0.085 0.915 10 N -0.370 5.370 11 C 0.029 3.971 12 C -0.183 4.183 13 C -0.221 4.221 14 C 0.021 3.979 15 C -0.522 4.522 16 H 0.067 0.933 17 C -0.167 4.167 18 N -0.500 5.500 19 Si 0.787 3.213 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.179 1.179 23 C -0.190 4.190 24 C -0.176 4.176 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.293 5.980 -7.540 23.367 hybrid contribution 0.559 -0.446 0.113 0.724 sum -20.734 5.534 -7.427 22.708 Atomic orbital electron populations 1.21740 0.94521 1.01774 1.02302 1.21530 0.96791 0.95655 1.01403 1.22182 0.92955 0.96490 0.99089 0.89922 1.22132 0.98221 0.98600 0.95939 1.22062 0.95487 1.00543 0.97658 1.22821 0.98901 0.97887 0.98366 1.21895 0.94479 0.96360 0.82764 0.91539 1.43962 1.13891 1.72435 1.06707 1.17481 0.87291 0.99843 0.92476 1.20185 0.94602 1.05738 0.97792 1.20694 0.97810 1.08120 0.95458 1.17731 0.92958 0.95099 0.92080 1.19270 1.00450 1.22414 1.10091 0.93280 1.26673 0.95615 0.97181 0.97277 1.69785 1.12176 1.30992 1.37063 0.85538 0.80119 0.76934 0.78740 1.18910 1.20779 1.17909 1.20813 0.94536 1.06051 0.97608 1.20269 0.96935 1.05701 0.94668 0.92825 0.92514 0.91728 0.92420 0.93350 0.91144 0.90236 0.91746 0.90801 0.93355 0.91614 0.76622 0.86756 0.89121 0.90282 0.87950 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.77 71.98 0.70 -1.39 16 2 C -0.12 -2.15 5.33 30.60 0.16 -1.98 16 3 C -0.09 -1.59 2.49 -9.72 -0.02 -1.61 16 4 H 0.08 1.39 8.02 -2.38 -0.02 1.37 16 5 C -0.11 -1.65 5.59 31.32 0.18 -1.48 16 6 C -0.12 -2.03 6.80 31.32 0.21 -1.81 16 7 C -0.14 -3.20 6.51 31.68 0.21 -2.99 16 8 C 0.15 3.69 2.40 46.29 0.11 3.80 16 9 H 0.07 1.86 6.25 -2.39 -0.01 1.84 16 10 N -0.74 -20.95 5.32 -312.41 -1.66 -22.62 16 11 C 0.13 4.90 6.67 38.67 0.26 5.15 16 12 C -0.16 -6.79 9.15 22.15 0.20 -6.59 16 13 C -0.20 -9.94 7.11 22.47 0.16 -9.78 16 14 C 0.02 1.31 5.10 -21.27 -0.11 1.20 16 15 C -0.49 -29.19 9.55 23.37 0.22 -28.96 16 16 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 17 C 0.04 2.48 5.40 85.22 0.46 2.94 16 18 N -0.87 -51.07 13.93 21.81 0.30 -50.77 16 19 Si 0.96 45.75 24.51 68.60 1.68 47.43 16 20 H -0.26 -11.90 6.70 99.48 0.67 -11.23 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.26 -12.33 6.87 99.48 0.68 -11.65 16 23 C -0.17 -8.03 9.74 22.48 0.22 -7.81 16 24 C -0.15 -6.08 9.82 22.15 0.22 -5.86 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.79 7.55 -2.39 -0.02 0.77 16 28 H 0.06 1.10 8.01 -2.39 -0.02 1.09 16 29 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.00 7.74 -2.39 -0.02 0.98 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.40 9.64 8.57 -92.71 -0.79 8.84 16 37 H 0.11 4.31 6.14 -2.91 -0.02 4.29 16 38 H 0.09 4.56 4.73 -2.91 -0.01 4.55 16 39 H 0.29 15.23 8.30 -92.71 -0.77 14.46 16 40 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 41 H 0.13 4.14 8.06 -2.92 -0.02 4.12 16 Total: -1.00 -63.14 320.51 3.65 -59.49 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.15 Total: 23.64 kcal Atomic # 6 Polarization: -60.36 SS G_CDS: 3.18 Total: -57.18 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.36 Total: -73.38 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.68 Total: 47.43 kcal Total: -63.14 3.65 -59.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163924032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.846 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds