Wall clock time and date at job start Mon Mar 30 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00013 * 2 1 4 4 C 1.31001 * 120.00205 * 179.97438 * 2 1 3 5 5 C 1.50708 * 119.99719 * 5.48231 * 4 2 1 6 6 N 1.46897 * 109.46839 * 125.45673 * 5 4 2 7 7 C 1.46901 * 110.99852 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46676 * 35.00090 * 7 6 5 9 9 C 1.52995 * 109.47109 * 154.99709 * 7 6 5 10 10 C 1.50696 * 109.47600 * 295.00470 * 9 7 6 11 11 H 1.07999 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.37875 * 120.00468 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00478 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99751 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47246 * 90.00234 * 14 12 10 16 16 H 1.48495 * 109.47391 * 210.00327 * 14 12 10 17 17 H 1.48502 * 109.47179 * 330.00406 * 14 12 10 18 18 C 1.50699 * 109.47299 * 275.00329 * 7 6 5 19 19 C 1.38232 * 119.99822 * 319.72486 * 18 7 6 20 20 C 1.38237 * 119.99937 * 179.81348 * 19 18 7 21 21 C 1.38236 * 119.99902 * 0.39511 * 20 19 18 22 22 C 1.38237 * 119.99719 * 359.85832 * 21 20 19 23 23 C 1.38226 * 120.00169 * 359.95505 * 22 21 20 24 24 H 1.09000 * 109.47472 * 234.91041 * 1 2 3 25 25 H 1.09005 * 109.47358 * 354.92012 * 1 2 3 26 26 H 1.09003 * 109.47394 * 114.91637 * 1 2 3 27 27 H 1.09000 * 109.47327 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47166 * 300.00084 * 3 2 1 29 29 H 1.09001 * 109.47188 * 59.99408 * 3 2 1 30 30 H 1.07994 * 120.00227 * 185.48325 * 4 2 1 31 31 H 1.08999 * 109.47287 * 5.45761 * 5 4 2 32 32 H 1.09004 * 109.46828 * 245.45602 * 5 4 2 33 33 H 1.00897 * 111.00416 * 303.95159 * 6 5 4 34 34 H 1.09001 * 109.46873 * 55.00706 * 9 7 6 35 35 H 1.09006 * 109.47025 * 175.00162 * 9 7 6 36 36 H 0.97002 * 119.99943 * 179.97438 * 13 12 10 37 37 H 1.08004 * 119.99973 * 359.97438 * 19 18 7 38 38 H 1.08005 * 119.99977 * 180.23178 * 20 19 18 39 39 H 1.07997 * 120.00040 * 179.83939 * 21 20 19 40 40 H 1.08002 * 119.99607 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.99940 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4136 -2.4367 -0.1236 6 7 1.9580 -3.2090 -1.2484 7 6 1.2515 -4.4880 -1.3997 8 1 0.2004 -4.3550 -1.1433 9 6 1.3665 -4.9659 -2.8485 10 6 0.6444 -4.0020 -3.7543 11 1 0.1523 -3.1354 -3.3382 12 6 0.6111 -4.2269 -5.1142 13 7 -0.0194 -3.3860 -5.9046 14 14 1.4617 -5.7263 -5.8339 15 1 0.5089 -6.8647 -5.8733 16 1 1.9237 -5.4197 -7.2115 17 1 2.6287 -6.0865 -4.9891 18 6 1.8665 -5.5132 -0.4821 19 6 3.2388 -5.5655 -0.3252 20 6 3.8027 -6.5033 0.5194 21 6 2.9947 -7.3943 1.2007 22 6 1.6226 -7.3454 1.0397 23 6 1.0586 -6.4051 0.1981 24 1 -0.3634 -0.5907 0.8409 25 1 -0.3634 1.0237 0.0910 26 1 -0.3634 -0.4330 -0.9320 27 1 3.3321 1.1059 0.0005 28 1 1.9971 1.8766 -0.8900 29 1 1.9970 1.8767 0.8899 30 1 3.2382 -1.1366 0.0899 31 1 0.3574 -2.2334 -0.2999 32 1 1.5247 -3.0088 0.7976 33 1 1.9256 -2.6743 -2.1035 34 1 2.4176 -5.0138 -3.1329 35 1 0.9196 -5.9558 -2.9411 36 1 -0.0425 -3.5441 -6.8614 37 1 3.8704 -4.8718 -0.8605 38 1 4.8748 -6.5417 0.6449 39 1 3.4354 -8.1287 1.8586 40 1 0.9914 -8.0418 1.5717 41 1 -0.0135 -6.3666 0.0727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181939513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:16 Heat of formation + Delta-G solvation = 23.591275 kcal Electronic energy + Delta-G solvation = -19017.872100 eV Core-core repulsion = 16283.103518 eV Total energy + Delta-G solvation = -2734.768582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.05848 -37.10977 -35.37559 -32.65771 -31.25195 -30.46453 -29.36613 -27.81504 -27.23880 -24.56805 -22.67922 -22.01810 -21.60671 -19.55721 -17.60075 -17.02201 -16.20082 -15.39470 -15.06516 -14.78583 -14.40322 -14.06278 -13.92021 -13.48583 -13.34382 -12.93622 -12.75269 -12.47948 -12.31404 -12.26264 -12.05711 -11.73190 -11.55331 -11.29236 -11.07389 -11.02909 -10.63094 -10.53129 -10.36746 -9.91999 -9.75833 -9.26569 -8.60020 -8.51594 -8.51092 -8.15675 -7.76017 -6.10511 -4.09709 1.77591 1.83193 2.39761 3.29255 3.37170 3.42608 4.22098 4.41663 4.84886 5.11528 5.13480 5.26182 5.26904 5.33767 5.42203 5.56217 5.60605 5.63959 5.73113 5.76204 5.90889 5.95591 5.98290 6.01562 6.07679 6.14265 6.21960 6.32811 6.36217 6.45271 6.55786 6.83145 6.89054 6.90846 7.08401 7.13615 7.15147 7.25184 7.43083 7.70311 7.85856 8.20686 8.42738 8.90459 9.51809 11.02125 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.008405 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.992668 B = 3330.579627 C = 5580.332881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 C -0.112 4.112 4 C -0.148 4.148 5 C 0.085 3.915 6 N -0.677 5.677 7 C 0.136 3.864 8 H 0.045 0.955 9 C -0.009 4.009 10 C -0.525 4.525 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.899 5.899 14 Si 0.878 3.122 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.263 1.263 18 C -0.058 4.058 19 C -0.089 4.089 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.123 4.123 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.362 0.638 34 H 0.028 0.972 35 H 0.018 0.982 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 0.414 13.835 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.142 4.142 3 C -0.169 4.169 4 C -0.167 4.167 5 C -0.044 4.044 6 N -0.311 5.311 7 C 0.027 3.973 8 H 0.063 0.937 9 C -0.046 4.046 10 C -0.563 4.563 11 H 0.089 0.911 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.188 1.188 18 C -0.059 4.059 19 C -0.107 4.107 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.142 4.142 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.184 0.816 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.871 0.191 13.990 14.815 hybrid contribution -0.468 -0.533 -0.873 1.125 sum 4.403 -0.342 13.117 13.840 Atomic orbital electron populations 1.20801 0.92645 1.01664 1.02283 1.21586 0.95730 0.95022 1.01869 1.20799 0.99388 0.95152 1.01536 1.22663 0.99663 0.93326 1.01038 1.21006 0.95760 0.92014 0.95572 1.60406 1.56607 1.05271 1.08804 1.20388 0.94013 0.87478 0.95449 0.93669 1.19735 0.97912 0.96855 0.90146 1.21021 1.34152 1.09775 0.91316 0.91115 1.24964 0.94686 0.96229 0.97107 1.69907 1.42751 1.36699 1.04409 0.86805 0.80779 0.83469 0.78445 1.20338 1.21376 1.18784 1.20244 0.93901 0.96081 0.95648 1.21075 0.94969 0.97377 0.97286 1.21139 0.99274 0.96402 0.98049 1.20992 0.93900 0.99724 1.00865 1.20987 0.94997 0.99043 0.99544 1.21067 0.99691 0.96134 0.97310 0.91954 0.92569 0.91160 0.92231 0.91660 0.92327 0.87232 0.94646 0.91543 0.81584 0.95395 0.96358 0.92662 0.85321 0.86829 0.87036 0.86857 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.55 36.00 0.31 -1.22 16 2 C -0.14 -1.92 6.05 -101.07 -0.61 -2.53 16 3 C -0.11 -1.27 10.04 36.00 0.36 -0.91 16 4 C -0.15 -2.19 9.37 -36.02 -0.34 -2.53 16 5 C 0.09 1.39 5.67 -4.97 -0.03 1.36 16 6 N -0.68 -12.62 5.55 -109.22 -0.61 -13.22 16 7 C 0.14 2.71 2.19 -68.87 -0.15 2.56 16 8 H 0.05 0.93 7.66 -51.93 -0.40 0.53 16 9 C -0.01 -0.21 3.62 -27.89 -0.10 -0.31 16 10 C -0.52 -14.27 8.67 -34.44 -0.30 -14.57 16 11 H 0.07 2.05 7.73 -52.49 -0.41 1.65 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 14 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 18 C -0.06 -1.04 4.71 -104.63 -0.49 -1.53 16 19 C -0.09 -1.50 9.32 -39.58 -0.37 -1.87 16 20 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 21 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 22 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 23 C -0.12 -2.01 9.67 -39.59 -0.38 -2.39 16 24 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 25 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 26 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 27 H 0.06 0.64 7.79 -51.93 -0.40 0.24 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.11 1.57 7.84 -52.49 -0.41 1.15 16 31 H 0.04 0.59 5.79 -51.93 -0.30 0.29 16 32 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 33 H 0.36 7.53 7.20 -39.29 -0.28 7.25 16 34 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 35 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.13 2.22 7.73 -52.48 -0.41 1.81 16 38 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.77 8.04 -52.48 -0.42 1.35 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -28.92 336.04 -9.55 -38.46 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.72 Total: 7.83 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -3.39 Total: -28.79 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.17 Total: -39.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.92 -9.55 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181939513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.054 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds