Wall clock time and date at job start Mon Mar 30 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00013 * 2 1 4 4 C 1.31001 * 120.00205 * 179.97438 * 2 1 3 5 5 C 1.50708 * 119.99719 * 5.48231 * 4 2 1 6 6 N 1.46897 * 109.46839 * 125.45673 * 5 4 2 7 7 C 1.46901 * 110.99852 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46676 * 35.00090 * 7 6 5 9 9 C 1.52995 * 109.47109 * 154.99709 * 7 6 5 10 10 C 1.50696 * 109.47600 * 295.00470 * 9 7 6 11 11 H 1.07999 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.37875 * 120.00468 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00478 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99751 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47246 * 90.00234 * 14 12 10 16 16 H 1.48495 * 109.47391 * 210.00327 * 14 12 10 17 17 H 1.48502 * 109.47179 * 330.00406 * 14 12 10 18 18 C 1.50699 * 109.47299 * 275.00329 * 7 6 5 19 19 C 1.38232 * 119.99822 * 319.72486 * 18 7 6 20 20 C 1.38237 * 119.99937 * 179.81348 * 19 18 7 21 21 C 1.38236 * 119.99902 * 0.39511 * 20 19 18 22 22 C 1.38237 * 119.99719 * 359.85832 * 21 20 19 23 23 C 1.38226 * 120.00169 * 359.95505 * 22 21 20 24 24 H 1.09000 * 109.47472 * 234.91041 * 1 2 3 25 25 H 1.09005 * 109.47358 * 354.92012 * 1 2 3 26 26 H 1.09003 * 109.47394 * 114.91637 * 1 2 3 27 27 H 1.09000 * 109.47327 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47166 * 300.00084 * 3 2 1 29 29 H 1.09001 * 109.47188 * 59.99408 * 3 2 1 30 30 H 1.07994 * 120.00227 * 185.48325 * 4 2 1 31 31 H 1.08999 * 109.47287 * 5.45761 * 5 4 2 32 32 H 1.09004 * 109.46828 * 245.45602 * 5 4 2 33 33 H 1.00897 * 111.00416 * 303.95159 * 6 5 4 34 34 H 1.09001 * 109.46873 * 55.00706 * 9 7 6 35 35 H 1.09006 * 109.47025 * 175.00162 * 9 7 6 36 36 H 0.97002 * 119.99943 * 179.97438 * 13 12 10 37 37 H 1.08004 * 119.99973 * 359.97438 * 19 18 7 38 38 H 1.08005 * 119.99977 * 180.23178 * 20 19 18 39 39 H 1.07997 * 120.00040 * 179.83939 * 21 20 19 40 40 H 1.08002 * 119.99607 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.99940 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4136 -2.4367 -0.1236 6 7 1.9580 -3.2090 -1.2484 7 6 1.2515 -4.4880 -1.3997 8 1 0.2004 -4.3550 -1.1433 9 6 1.3665 -4.9659 -2.8485 10 6 0.6444 -4.0020 -3.7543 11 1 0.1523 -3.1354 -3.3382 12 6 0.6111 -4.2269 -5.1142 13 7 -0.0194 -3.3860 -5.9046 14 14 1.4617 -5.7263 -5.8339 15 1 0.5089 -6.8647 -5.8733 16 1 1.9237 -5.4197 -7.2115 17 1 2.6287 -6.0865 -4.9891 18 6 1.8665 -5.5132 -0.4821 19 6 3.2388 -5.5655 -0.3252 20 6 3.8027 -6.5033 0.5194 21 6 2.9947 -7.3943 1.2007 22 6 1.6226 -7.3454 1.0397 23 6 1.0586 -6.4051 0.1981 24 1 -0.3634 -0.5907 0.8409 25 1 -0.3634 1.0237 0.0910 26 1 -0.3634 -0.4330 -0.9320 27 1 3.3321 1.1059 0.0005 28 1 1.9971 1.8766 -0.8900 29 1 1.9970 1.8767 0.8899 30 1 3.2382 -1.1366 0.0899 31 1 0.3574 -2.2334 -0.2999 32 1 1.5247 -3.0088 0.7976 33 1 1.9256 -2.6743 -2.1035 34 1 2.4176 -5.0138 -3.1329 35 1 0.9196 -5.9558 -2.9411 36 1 -0.0425 -3.5441 -6.8614 37 1 3.8704 -4.8718 -0.8605 38 1 4.8748 -6.5417 0.6449 39 1 3.4354 -8.1287 1.8586 40 1 0.9914 -8.0418 1.5717 41 1 -0.0135 -6.3666 0.0727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181939513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:15 Heat of formation + Delta-G solvation = 8.415854 kcal Electronic energy + Delta-G solvation = -19018.530156 eV Core-core repulsion = 16283.103518 eV Total energy + Delta-G solvation = -2735.426638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.34680 -38.35841 -36.77475 -34.69908 -32.65677 -31.64370 -30.98003 -28.96257 -28.51620 -26.20231 -23.94783 -23.34390 -23.16695 -21.04019 -19.08377 -18.74483 -17.46334 -16.83117 -16.48945 -16.35570 -15.84737 -15.48532 -15.10419 -14.82683 -14.64875 -14.43205 -14.09120 -14.01132 -13.65045 -13.50017 -13.31230 -13.26027 -12.86657 -12.75404 -12.51483 -12.36475 -12.15379 -11.88250 -11.75498 -11.70535 -11.51101 -11.25333 -10.79020 -9.69700 -9.67337 -9.42678 -9.28336 -8.31153 -6.34538 0.57287 0.64289 1.24045 1.33368 1.35752 1.47617 2.33924 2.99967 3.03948 3.47589 3.93175 4.07538 4.09771 4.16225 4.28687 4.37753 4.41979 4.45004 4.58586 4.62977 4.65540 4.71323 4.78751 4.85076 4.86688 4.92671 5.00876 5.08231 5.13406 5.20546 5.24358 5.29885 5.35908 5.57661 5.69510 5.73591 5.77172 5.85604 5.99048 6.20473 6.24946 6.34888 6.56812 6.70619 7.29930 8.84585 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.008405 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.992668 B = 3330.579627 C = 5580.332881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.134 4.134 3 C -0.112 4.112 4 C -0.168 4.168 5 C 0.092 3.908 6 N -0.673 5.673 7 C 0.145 3.855 8 H 0.028 0.972 9 C 0.000 4.000 10 C -0.523 4.523 11 H 0.037 0.963 12 C 0.015 3.985 13 N -0.944 5.944 14 Si 0.942 3.058 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.252 1.252 18 C -0.081 4.081 19 C -0.105 4.105 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.138 4.138 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.345 0.655 34 H 0.023 0.977 35 H 0.016 0.984 36 H 0.266 0.734 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -1.030 15.660 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.135 4.135 3 C -0.168 4.168 4 C -0.186 4.186 5 C -0.036 4.036 6 N -0.305 5.305 7 C 0.035 3.965 8 H 0.046 0.954 9 C -0.038 4.038 10 C -0.561 4.561 11 H 0.055 0.945 12 C -0.183 4.183 13 N -0.584 5.584 14 Si 0.766 3.234 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.176 1.176 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.156 4.156 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.133 0.867 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.303 -1.259 15.845 17.099 hybrid contribution -0.962 -0.030 -1.348 1.656 sum 5.341 -1.289 14.497 15.503 Atomic orbital electron populations 1.20822 0.92521 1.02900 1.01261 1.21926 0.96111 0.95856 0.99637 1.20845 0.99411 0.93894 1.02658 1.22587 0.99858 0.92842 1.03342 1.20948 0.95342 0.92757 0.94559 1.60488 1.56504 1.04993 1.08503 1.20163 0.93579 0.88772 0.93955 0.95420 1.19594 0.96662 0.95654 0.91854 1.21250 1.33515 1.09313 0.92018 0.94453 1.25825 0.95535 0.99295 0.97629 1.70042 1.44690 1.38882 1.04823 0.85779 0.80057 0.79777 0.77770 1.19475 1.20855 1.17608 1.20058 0.94699 0.96559 0.96866 1.21083 0.94382 0.98390 0.98437 1.21444 1.00864 0.95500 0.96969 1.21435 0.93589 0.99495 1.00188 1.21344 0.95896 0.98473 0.98545 1.21215 0.99814 0.96604 0.97996 0.91370 0.90474 0.93525 0.91676 0.91271 0.90273 0.86725 0.95685 0.91375 0.83506 0.95831 0.96572 0.92500 0.86461 0.84239 0.83480 0.83899 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.55 71.23 0.61 -2.48 16 2 C -0.13 -3.60 6.05 -16.49 -0.10 -3.70 16 3 C -0.11 -2.34 10.04 71.23 0.72 -1.63 16 4 C -0.17 -5.00 9.37 25.65 0.24 -4.76 16 5 C 0.09 3.13 5.67 85.56 0.49 3.61 16 6 N -0.67 -26.22 5.55 -499.46 -2.77 -28.99 16 7 C 0.15 5.98 2.19 44.17 0.10 6.08 16 8 H 0.03 1.21 7.66 -2.39 -0.02 1.19 16 9 C 0.00 0.00 3.62 29.85 0.11 0.11 16 10 C -0.52 -29.59 8.67 25.60 0.22 -29.37 16 11 H 0.04 2.31 7.73 -2.91 -0.02 2.28 16 12 C 0.01 0.86 5.47 84.65 0.46 1.33 16 13 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 14 Si 0.94 44.87 27.47 68.60 1.88 46.76 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 18 C -0.08 -2.90 4.71 -19.87 -0.09 -2.99 16 19 C -0.10 -3.45 9.32 22.27 0.21 -3.24 16 20 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 21 C -0.13 -3.04 10.05 22.27 0.22 -2.81 16 22 C -0.12 -3.17 10.05 22.27 0.22 -2.94 16 23 C -0.14 -4.34 9.67 22.27 0.22 -4.12 16 24 H 0.07 1.68 7.84 -2.39 -0.02 1.66 16 25 H 0.08 1.66 8.01 -2.38 -0.02 1.64 16 26 H 0.05 1.44 7.67 -2.39 -0.02 1.42 16 27 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 3.27 7.84 -2.91 -0.02 3.25 16 31 H 0.03 0.89 5.79 -2.39 -0.01 0.88 16 32 H 0.07 2.25 8.00 -2.39 -0.02 2.24 16 33 H 0.35 15.24 7.20 -89.70 -0.65 14.60 16 34 H 0.02 1.14 7.20 -2.39 -0.02 1.13 16 35 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.12 4.05 7.73 -2.91 -0.02 4.02 16 38 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.12 3.55 8.04 -2.91 -0.02 3.52 16 Total: -1.00 -63.80 336.04 3.54 -60.26 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.29 Total: 30.31 kcal Atomic # 6 Polarization: -53.97 SS G_CDS: 3.84 Total: -50.13 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -2.47 Total: -87.20 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -63.80 3.54 -60.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181939513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.679 kcal (2) G-P(sol) polarization free energy of solvation -63.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds