Wall clock time and date at job start Mon Mar 30 2020 07:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.47260 * 2 1 4 4 C 1.30995 * 119.99974 * 126.33316 * 3 2 1 5 5 C 1.50702 * 120.00154 * 7.54043 * 4 3 2 6 6 C 1.52999 * 109.46982 * 127.61624 * 5 4 3 7 7 N 1.46500 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.39679 * 119.99985 * 179.72933 * 7 6 5 9 9 C 1.38908 * 120.07360 * 359.97438 * 8 7 6 10 10 C 1.38105 * 119.92091 * 179.77258 * 9 8 7 11 11 C 1.38281 * 120.07438 * 0.51219 * 10 9 8 12 12 C 1.50704 * 119.92366 * 179.72324 * 11 10 9 13 13 C 1.50697 * 109.47193 * 270.01937 * 12 11 10 14 14 H 1.08000 * 120.00045 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99891 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00184 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47301 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47263 * 120.00369 * 17 15 13 20 20 H 1.48505 * 109.46821 * 240.00018 * 17 15 13 21 21 C 1.38282 * 120.15499 * 359.74154 * 11 10 9 22 22 C 1.38111 * 120.07080 * 0.02562 * 21 11 10 23 23 H 1.09001 * 109.46443 * 299.99998 * 1 2 3 24 24 H 1.09001 * 109.46690 * 59.99872 * 1 2 3 25 25 H 1.08992 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46443 * 240.00002 * 2 1 3 27 27 H 1.08996 * 109.47120 * 120.00059 * 2 1 3 28 28 H 1.08006 * 119.99957 * 306.33748 * 3 2 1 29 29 H 1.08001 * 120.00159 * 187.53931 * 4 3 2 30 30 H 1.09002 * 109.46819 * 7.61979 * 5 4 3 31 31 H 1.09001 * 109.47102 * 247.61715 * 5 4 3 32 32 H 1.08997 * 109.47393 * 59.99843 * 6 5 4 33 33 H 1.09001 * 109.47276 * 299.99984 * 6 5 4 34 34 H 0.96998 * 119.99756 * 359.97438 * 7 6 5 35 35 H 1.07999 * 120.04093 * 0.02562 * 9 8 7 36 36 H 1.08005 * 119.96153 * 180.25057 * 10 9 8 37 37 H 1.09006 * 109.47061 * 30.01928 * 12 11 10 38 38 H 1.09004 * 109.47204 * 150.02244 * 12 11 10 39 39 H 0.97000 * 120.00280 * 179.97438 * 16 15 13 40 40 H 1.07991 * 119.96814 * 180.02562 * 21 11 10 41 41 H 1.08000 * 120.03515 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.8845 1.8142 0.9139 5 6 3.4925 0.8104 1.8593 6 6 5.0162 0.9478 1.8381 7 7 5.6073 -0.0285 2.7566 8 6 6.9946 -0.0975 2.9043 9 6 7.8151 0.7583 2.1806 10 6 9.1861 0.6905 2.3326 11 6 9.7426 -0.2352 3.1961 12 6 11.2394 -0.3104 3.3546 13 6 11.8027 -1.2824 2.3502 14 1 11.1430 -1.7941 1.6652 15 6 13.1605 -1.5176 2.3049 16 7 13.9641 -0.8941 3.1387 17 14 13.8588 -2.7219 1.0593 18 1 12.7541 -3.2859 0.2429 19 1 14.8185 -2.0162 0.1726 20 1 14.5592 -3.8206 1.7719 21 6 8.9290 -1.0922 3.9141 22 6 7.5569 -1.0266 3.7705 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6899 2.1147 -0.7535 29 1 3.1513 2.8580 0.9899 30 1 3.2141 -0.1965 1.5483 31 1 3.1252 0.9935 2.8691 32 1 5.2947 1.9547 2.1489 33 1 5.3835 0.7647 0.8283 34 1 5.0355 -0.6293 3.2595 35 1 7.3813 1.4787 1.5029 36 1 9.8245 1.3584 1.7733 37 1 11.6725 0.6760 3.1881 38 1 11.4815 -0.6482 4.3623 39 1 14.9193 -1.0598 3.1071 40 1 9.3668 -1.8137 4.5879 41 1 6.9220 -1.6965 4.3313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198661643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:02 Heat of formation + Delta-G solvation = 20.721364 kcal Electronic energy + Delta-G solvation = -17822.961077 eV Core-core repulsion = 15088.068047 eV Total energy + Delta-G solvation = -2734.893031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.91783 -37.40020 -35.43165 -33.15306 -32.08838 -30.35422 -30.08975 -28.33752 -25.89703 -23.80992 -23.41378 -22.71990 -21.36338 -19.94483 -18.68044 -16.75964 -16.29646 -16.17710 -15.56741 -14.88020 -14.81053 -14.35557 -14.09482 -13.98110 -13.46644 -13.02129 -12.74291 -12.65725 -12.45017 -12.35953 -12.17600 -11.74059 -11.60632 -11.30294 -11.17738 -11.08376 -10.69374 -10.62277 -10.47369 -10.05401 -9.70900 -9.37776 -9.25726 -8.95824 -8.35023 -8.18274 -6.71817 -5.94700 -3.99052 1.89525 2.17541 2.42103 3.33727 3.41111 3.46815 3.69503 4.44762 4.47105 4.71954 4.72256 4.80441 4.92219 4.98849 5.02161 5.27345 5.34929 5.37822 5.44413 5.58044 5.59565 5.62703 5.73452 5.82444 5.83916 5.87793 6.10442 6.19182 6.36466 6.37812 6.49211 6.55613 6.76789 6.91230 7.35161 7.35469 7.48631 7.65660 7.90167 8.00929 8.02399 8.10939 8.44647 9.07169 9.64296 11.13613 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.002955 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.753541 B = 9471.668753 C = 9790.600973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.111 4.111 6 C 0.137 3.863 7 N -0.760 5.760 8 C 0.181 3.819 9 C -0.194 4.194 10 C -0.081 4.081 11 C -0.085 4.085 12 C 0.052 3.948 13 C -0.506 4.506 14 H 0.057 0.943 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.080 4.080 22 C -0.194 4.194 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.392 0.608 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.116 0.884 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.181 3.714 -3.321 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.175 4.175 4 C -0.173 4.173 5 C -0.148 4.148 6 C 0.012 3.988 7 N -0.393 5.393 8 C 0.081 3.919 9 C -0.217 4.217 10 C -0.100 4.100 11 C -0.086 4.086 12 C 0.016 3.984 13 C -0.545 4.545 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.099 4.099 22 C -0.216 4.216 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.024 3.881 -3.413 24.574 hybrid contribution 0.265 -0.784 -0.575 1.008 sum -23.759 3.097 -3.988 24.290 Atomic orbital electron populations 1.21694 0.95149 1.01634 1.01865 1.20844 0.96059 0.94803 1.02905 1.22822 0.98724 0.97539 0.98458 1.22652 0.98331 0.99262 0.97060 1.21018 0.94761 0.99421 0.99615 1.21074 0.91419 0.92675 0.93638 1.44397 1.03349 1.41778 1.49754 1.17607 0.82875 0.95581 0.95815 1.20515 0.93747 1.02918 1.04498 1.20849 0.93366 0.98270 0.97481 1.20456 0.98516 0.94347 0.95327 1.18254 0.85021 0.97619 0.97543 1.21177 0.91860 1.24000 1.17416 0.92520 1.25028 0.97168 0.96323 0.96026 1.69974 1.03742 1.42680 1.37192 0.86519 0.79029 0.81033 0.81370 1.19708 1.21034 1.21027 1.20827 0.92002 0.98133 0.98934 1.20462 0.95405 1.02024 1.03709 0.92706 0.92741 0.92583 0.91225 0.90548 0.87248 0.87030 0.90102 0.90780 0.92757 0.92692 0.77442 0.87385 0.86658 0.95690 0.95684 0.93044 0.86600 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 2 C -0.11 -0.77 6.04 -27.88 -0.17 -0.93 16 3 C -0.16 -1.18 9.51 -36.03 -0.34 -1.53 16 4 C -0.15 -1.23 9.51 -36.02 -0.34 -1.57 16 5 C -0.11 -0.92 5.41 -27.88 -0.15 -1.07 16 6 C 0.14 1.48 4.89 -4.04 -0.02 1.46 16 7 N -0.76 -9.71 5.73 -58.63 -0.34 -10.04 16 8 C 0.18 3.01 6.65 -83.79 -0.56 2.45 16 9 C -0.19 -3.45 9.31 -39.38 -0.37 -3.82 16 10 C -0.08 -1.66 9.69 -39.61 -0.38 -2.05 16 11 C -0.08 -1.92 5.07 -104.59 -0.53 -2.45 16 12 C 0.05 1.40 5.10 -29.03 -0.15 1.25 16 13 C -0.51 -14.57 9.09 -34.44 -0.31 -14.88 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.08 -1.63 9.69 -39.61 -0.38 -2.02 16 22 C -0.19 -3.38 9.90 -39.38 -0.39 -3.77 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.54 5.28 -51.93 -0.27 0.26 16 28 H 0.11 0.73 8.06 -52.48 -0.42 0.31 16 29 H 0.11 0.82 8.06 -52.49 -0.42 0.39 16 30 H 0.08 0.65 5.30 -51.93 -0.28 0.37 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.60 7.96 -51.93 -0.41 0.19 16 33 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 34 H 0.39 4.26 8.49 -40.82 -0.35 3.91 16 35 H 0.11 1.68 6.73 -52.49 -0.35 1.33 16 36 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 37 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -30.83 340.02 -10.01 -40.84 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.68 Total: 1.38 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -3.83 Total: -27.95 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.40 Total: -36.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.83 -10.01 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198661643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.557 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds