Wall clock time and date at job start Mon Mar 30 2020 07:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.47260 * 2 1 4 4 C 1.30995 * 119.99974 * 126.33316 * 3 2 1 5 5 C 1.50702 * 120.00154 * 7.54043 * 4 3 2 6 6 C 1.52999 * 109.46982 * 127.61624 * 5 4 3 7 7 N 1.46500 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.39679 * 119.99985 * 179.72933 * 7 6 5 9 9 C 1.38908 * 120.07360 * 359.97438 * 8 7 6 10 10 C 1.38105 * 119.92091 * 179.77258 * 9 8 7 11 11 C 1.38281 * 120.07438 * 0.51219 * 10 9 8 12 12 C 1.50704 * 119.92366 * 179.72324 * 11 10 9 13 13 C 1.50697 * 109.47193 * 270.01937 * 12 11 10 14 14 H 1.08000 * 120.00045 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99891 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00184 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47301 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47263 * 120.00369 * 17 15 13 20 20 H 1.48505 * 109.46821 * 240.00018 * 17 15 13 21 21 C 1.38282 * 120.15499 * 359.74154 * 11 10 9 22 22 C 1.38111 * 120.07080 * 0.02562 * 21 11 10 23 23 H 1.09001 * 109.46443 * 299.99998 * 1 2 3 24 24 H 1.09001 * 109.46690 * 59.99872 * 1 2 3 25 25 H 1.08992 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46443 * 240.00002 * 2 1 3 27 27 H 1.08996 * 109.47120 * 120.00059 * 2 1 3 28 28 H 1.08006 * 119.99957 * 306.33748 * 3 2 1 29 29 H 1.08001 * 120.00159 * 187.53931 * 4 3 2 30 30 H 1.09002 * 109.46819 * 7.61979 * 5 4 3 31 31 H 1.09001 * 109.47102 * 247.61715 * 5 4 3 32 32 H 1.08997 * 109.47393 * 59.99843 * 6 5 4 33 33 H 1.09001 * 109.47276 * 299.99984 * 6 5 4 34 34 H 0.96998 * 119.99756 * 359.97438 * 7 6 5 35 35 H 1.07999 * 120.04093 * 0.02562 * 9 8 7 36 36 H 1.08005 * 119.96153 * 180.25057 * 10 9 8 37 37 H 1.09006 * 109.47061 * 30.01928 * 12 11 10 38 38 H 1.09004 * 109.47204 * 150.02244 * 12 11 10 39 39 H 0.97000 * 120.00280 * 179.97438 * 16 15 13 40 40 H 1.07991 * 119.96814 * 180.02562 * 21 11 10 41 41 H 1.08000 * 120.03515 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.8845 1.8142 0.9139 5 6 3.4925 0.8104 1.8593 6 6 5.0162 0.9478 1.8381 7 7 5.6073 -0.0285 2.7566 8 6 6.9946 -0.0975 2.9043 9 6 7.8151 0.7583 2.1806 10 6 9.1861 0.6905 2.3326 11 6 9.7426 -0.2352 3.1961 12 6 11.2394 -0.3104 3.3546 13 6 11.8027 -1.2824 2.3502 14 1 11.1430 -1.7941 1.6652 15 6 13.1605 -1.5176 2.3049 16 7 13.9641 -0.8941 3.1387 17 14 13.8588 -2.7219 1.0593 18 1 12.7541 -3.2859 0.2429 19 1 14.8185 -2.0162 0.1726 20 1 14.5592 -3.8206 1.7719 21 6 8.9290 -1.0922 3.9141 22 6 7.5569 -1.0266 3.7705 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6899 2.1147 -0.7535 29 1 3.1513 2.8580 0.9899 30 1 3.2141 -0.1965 1.5483 31 1 3.1252 0.9935 2.8691 32 1 5.2947 1.9547 2.1489 33 1 5.3835 0.7647 0.8283 34 1 5.0355 -0.6293 3.2595 35 1 7.3813 1.4787 1.5029 36 1 9.8245 1.3584 1.7733 37 1 11.6725 0.6760 3.1881 38 1 11.4815 -0.6482 4.3623 39 1 14.9193 -1.0598 3.1071 40 1 9.3668 -1.8137 4.5879 41 1 6.9220 -1.6965 4.3313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198661643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:01 Heat of formation + Delta-G solvation = 5.033400 kcal Electronic energy + Delta-G solvation = -17823.641359 eV Core-core repulsion = 15088.068047 eV Total energy + Delta-G solvation = -2735.573312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.31312 -38.19231 -36.58160 -35.05132 -33.16985 -31.69306 -31.59695 -29.47291 -27.52859 -24.96640 -24.41201 -24.06061 -22.69520 -21.48340 -19.34674 -18.47918 -17.91839 -17.09161 -16.73405 -16.53095 -15.77142 -15.58949 -15.19929 -14.76565 -14.66081 -14.48541 -14.38091 -14.13680 -13.63148 -13.24278 -13.18893 -13.00555 -12.91449 -12.69348 -12.55557 -12.38421 -12.23311 -11.81014 -11.63288 -11.56694 -11.37226 -11.21813 -10.58415 -10.53790 -9.83789 -9.67953 -8.30050 -7.95179 -6.29899 0.67597 0.89147 1.30928 1.39843 1.39982 1.54166 2.41757 2.63209 3.12762 3.16343 3.87129 4.07505 4.12571 4.21255 4.24080 4.26454 4.37807 4.50158 4.51918 4.66583 4.74660 4.77034 4.79281 4.80909 4.98074 5.04249 5.13919 5.20174 5.22234 5.25450 5.37585 5.38048 5.40944 5.56148 5.70643 5.80063 5.81567 5.96395 6.04902 6.23730 6.25479 6.58486 6.83635 6.99437 7.38365 8.92419 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.002955 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.753541 B = 9471.668753 C = 9790.600973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.157 4.157 4 C -0.165 4.165 5 C -0.101 4.101 6 C 0.134 3.866 7 N -0.745 5.745 8 C 0.196 3.804 9 C -0.195 4.195 10 C -0.091 4.091 11 C -0.124 4.124 12 C 0.063 3.937 13 C -0.524 4.524 14 H 0.052 0.948 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.275 1.275 21 C -0.090 4.090 22 C -0.190 4.190 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.405 0.595 35 H 0.132 0.868 36 H 0.109 0.891 37 H -0.003 1.003 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.112 0.888 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.737 3.033 -4.365 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.175 4.175 4 C -0.184 4.184 5 C -0.138 4.138 6 C 0.009 3.991 7 N -0.378 5.378 8 C 0.093 3.907 9 C -0.217 4.217 10 C -0.109 4.109 11 C -0.126 4.126 12 C 0.026 3.974 13 C -0.562 4.562 14 H 0.070 0.930 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.109 4.109 22 C -0.212 4.212 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.241 0.759 35 H 0.150 0.850 36 H 0.127 0.873 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.634 3.203 -4.455 27.193 hybrid contribution 0.902 -0.518 -0.247 1.069 sum -25.732 2.685 -4.702 26.296 Atomic orbital electron populations 1.21686 0.94489 1.02057 1.02004 1.20886 0.96680 0.94494 1.02865 1.22992 0.98339 0.97945 0.98241 1.22698 0.98864 0.99500 0.97327 1.20920 0.92724 0.99890 1.00279 1.21213 0.93048 0.92083 0.92721 1.44474 1.01838 1.41940 1.49514 1.17705 0.84627 0.94122 0.94213 1.20672 0.92539 1.03597 1.04938 1.20837 0.94847 0.97935 0.97331 1.20152 0.96285 0.97476 0.98677 1.17991 0.88357 0.95486 0.95587 1.21470 0.92377 1.24503 1.17828 0.92994 1.25969 0.97497 0.98199 0.98081 1.70098 1.04209 1.44134 1.38859 0.85383 0.78298 0.78570 0.78714 1.18999 1.20139 1.20080 1.20847 0.93403 0.97797 0.98810 1.20682 0.94315 1.02472 1.03757 0.92764 0.92423 0.92060 0.91316 0.90517 0.86548 0.86575 0.89607 0.89993 0.92604 0.93221 0.75881 0.84979 0.87301 0.98448 0.98328 0.92660 0.87015 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.90 71.99 0.71 -0.73 16 2 C -0.11 -1.32 6.04 29.85 0.18 -1.14 16 3 C -0.16 -1.99 9.51 25.65 0.24 -1.75 16 4 C -0.17 -2.20 9.51 25.65 0.24 -1.96 16 5 C -0.10 -1.36 5.41 29.85 0.16 -1.20 16 6 C 0.13 2.47 4.89 86.38 0.42 2.89 16 7 N -0.75 -16.45 5.73 -339.42 -1.95 -18.39 16 8 C 0.20 6.02 6.65 38.21 0.25 6.27 16 9 C -0.20 -6.64 9.31 22.40 0.21 -6.43 16 10 C -0.09 -3.79 9.69 22.25 0.22 -3.57 16 11 C -0.12 -5.83 5.07 -19.84 -0.10 -5.93 16 12 C 0.06 3.55 5.10 29.10 0.15 3.69 16 13 C -0.52 -31.22 9.09 25.60 0.23 -30.99 16 14 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.00 0.00 5.46 84.65 0.46 0.46 16 16 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 17 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 C -0.09 -3.69 9.69 22.25 0.22 -3.47 16 22 C -0.19 -6.25 9.90 22.40 0.22 -6.02 16 23 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.88 5.28 -2.39 -0.01 0.87 16 28 H 0.12 1.30 8.06 -2.91 -0.02 1.27 16 29 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.09 1.10 5.30 -2.39 -0.01 1.09 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.06 7.96 -2.39 -0.02 1.04 16 33 H 0.05 1.01 7.94 -2.39 -0.02 0.99 16 34 H 0.41 7.13 8.49 -92.71 -0.79 6.34 16 35 H 0.13 3.80 6.73 -2.91 -0.02 3.78 16 36 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.00 -0.17 8.08 -2.38 -0.02 -0.19 16 38 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.11 4.54 8.06 -2.92 -0.02 4.51 16 41 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -67.77 340.02 4.39 -63.37 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.21 Total: 14.88 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 3.82 Total: -49.89 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.66 Total: -76.03 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.77 4.39 -63.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198661643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.408 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds