Wall clock time and date at job start Mon Mar 30 2020 07:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47373 * 2 1 4 4 H 1.09004 * 109.90999 * 305.35464 * 3 2 1 5 5 C 1.53993 * 109.92020 * 184.04664 * 3 2 1 6 6 H 1.08999 * 110.31041 * 120.50249 * 5 3 2 7 7 C 1.50702 * 110.30436 * 358.43565 * 5 3 2 8 8 H 1.07997 * 120.00321 * 0.02562 * 7 5 3 9 9 C 1.37884 * 119.99973 * 180.02562 * 7 5 3 10 10 N 1.31512 * 120.00455 * 180.02562 * 9 7 5 11 11 Si 1.86803 * 119.99507 * 0.02562 * 9 7 5 12 12 H 1.48490 * 109.47435 * 90.00133 * 11 9 7 13 13 H 1.48509 * 109.46949 * 209.99854 * 11 9 7 14 14 H 1.48499 * 109.47490 * 329.99585 * 11 9 7 15 15 C 1.54592 * 105.14027 * 239.42592 * 5 3 2 16 16 C 1.54938 * 102.92378 * 338.03630 * 15 5 3 17 17 N 1.47903 * 109.91936 * 66.45389 * 3 2 1 18 18 C 1.46900 * 111.00116 * 265.20186 * 17 3 2 19 19 C 1.50704 * 109.46851 * 170.00035 * 18 17 3 20 20 C 1.38234 * 120.00277 * 90.00010 * 19 18 17 21 21 C 1.38230 * 119.99885 * 180.02562 * 20 19 18 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99518 * 270.01692 * 19 18 17 25 25 H 1.09010 * 109.47010 * 299.99585 * 1 2 3 26 26 H 1.08998 * 109.47258 * 59.99369 * 1 2 3 27 27 H 1.09003 * 109.47859 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46744 * 239.99977 * 2 1 3 29 29 H 1.09001 * 109.47202 * 120.00100 * 2 1 3 30 30 H 0.96996 * 120.00105 * 180.02562 * 10 9 7 31 31 H 1.08995 * 110.73186 * 96.39733 * 15 5 3 32 32 H 1.09003 * 110.72513 * 219.50512 * 15 5 3 33 33 H 1.09002 * 110.67159 * 278.98537 * 16 15 5 34 34 H 1.08995 * 110.67246 * 155.84930 * 16 15 5 35 35 H 1.08990 * 109.47288 * 49.99748 * 18 17 3 36 36 H 1.08997 * 109.46718 * 289.99381 * 18 17 3 37 37 H 1.07992 * 119.99701 * 359.97438 * 20 19 18 38 38 H 1.08000 * 120.00356 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.70664 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00423 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9901 -0.8359 5 6 3.5765 1.4556 -0.1022 6 1 3.8918 1.9983 -0.9934 7 6 4.1107 0.0468 -0.1323 8 1 3.4298 -0.7901 -0.0843 9 6 5.4689 -0.1738 -0.2212 10 7 5.9351 -1.4032 -0.2481 11 14 6.6466 1.2739 -0.3035 12 1 7.0509 1.6619 1.0716 13 1 7.8505 0.8889 -1.0833 14 1 5.9750 2.4216 -0.9645 15 6 4.0595 2.1877 1.1709 16 6 2.8160 3.0116 1.5897 17 7 1.6843 2.1027 1.2748 18 6 0.4272 2.8518 1.1468 19 6 -0.0299 3.3027 2.5102 20 6 0.3793 4.5261 3.0069 21 6 -0.0395 4.9393 4.2577 22 6 -0.8681 4.1294 5.0117 23 6 -1.2783 2.9065 4.5145 24 6 -0.8582 2.4926 3.2642 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 6.8906 -1.5583 -0.3103 31 1 4.3283 1.4728 1.9485 32 1 4.9008 2.8425 0.9436 33 1 2.7472 3.9287 1.0045 34 1 2.8442 3.2357 2.6560 35 1 -0.3340 2.2110 0.7019 36 1 0.5863 3.7225 0.5107 37 1 1.0270 5.1586 2.4180 38 1 0.2805 5.8949 4.6460 39 1 -1.1916 4.4502 5.9909 40 1 -1.9253 2.2736 5.1037 41 1 -1.1781 1.5369 2.8762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211466638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:27 Heat of formation + Delta-G solvation = 32.983383 kcal Electronic energy + Delta-G solvation = -19793.546612 eV Core-core repulsion = 17059.185302 eV Total energy + Delta-G solvation = -2734.361310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.55036 -38.28250 -33.73715 -32.59624 -31.96660 -30.79453 -29.84296 -27.53046 -25.72146 -23.60393 -22.70748 -22.18710 -20.87789 -20.13650 -18.89773 -16.70293 -16.41356 -15.51089 -15.21695 -15.05760 -14.46986 -14.15190 -13.90571 -13.33743 -13.19351 -12.81392 -12.74936 -12.53633 -12.27418 -12.19839 -11.69450 -11.46400 -11.22884 -11.16416 -10.90079 -10.52961 -10.34205 -10.30889 -9.98069 -9.76996 -9.61769 -9.40327 -8.82717 -8.69355 -8.64427 -8.49539 -7.81114 -6.00809 -3.99092 1.44237 1.49604 3.31213 3.39992 3.40308 3.83891 4.46344 4.65215 4.90700 4.96759 5.06628 5.17824 5.27700 5.42509 5.53059 5.58793 5.68216 5.73714 5.78971 5.84727 5.91340 6.01092 6.08559 6.12555 6.14211 6.20494 6.29624 6.49545 6.53941 6.57876 6.66446 6.76178 6.78201 6.87734 6.95335 7.08483 7.09141 7.23166 7.34923 7.66015 7.76389 7.84072 8.58634 9.04298 9.61886 11.10957 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026491 B = 0.005832 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.717896 B = 4800.199874 C = 5408.038496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.091 4.091 3 C 0.085 3.915 4 H 0.031 0.969 5 C 0.008 3.992 6 H 0.029 0.971 7 C -0.510 4.510 8 H 0.095 0.905 9 C 0.072 3.928 10 N -0.902 5.902 11 Si 0.873 3.127 12 H -0.278 1.278 13 H -0.295 1.295 14 H -0.268 1.268 15 C -0.129 4.129 16 C 0.039 3.961 17 N -0.500 5.500 18 C 0.073 3.927 19 C -0.063 4.063 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.100 4.100 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.262 0.738 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 10.700 5.996 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.129 4.129 3 C -0.022 4.022 4 H 0.049 0.951 5 C -0.011 4.011 6 H 0.047 0.953 7 C -0.548 4.548 8 H 0.113 0.887 9 C -0.129 4.129 10 N -0.541 5.541 11 Si 0.702 3.298 12 H -0.204 1.204 13 H -0.222 1.222 14 H -0.193 1.193 15 C -0.168 4.168 16 C -0.089 4.089 17 N -0.224 5.224 18 C -0.055 4.055 19 C -0.063 4.063 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.119 4.119 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.753 10.195 6.371 17.526 hybrid contribution 0.977 1.467 -0.574 1.854 sum -11.776 11.663 5.796 17.558 Atomic orbital electron populations 1.22064 0.98713 1.00427 1.00403 1.21512 0.92024 0.95968 1.03378 1.22294 0.97261 0.94753 0.87927 0.95076 1.20018 0.90503 0.97581 0.93043 0.95284 1.21396 0.92714 0.91026 1.49677 0.88711 1.24991 0.98219 0.95033 0.94687 1.69887 1.13587 1.19443 1.51208 0.87014 0.80756 0.83800 0.78259 1.20409 1.22160 1.19303 1.22950 0.94845 0.98003 1.00970 1.23195 0.92043 0.93870 0.99772 1.64703 1.00424 1.25620 1.31697 1.21442 0.94597 0.97012 0.92438 1.19852 0.96174 0.93792 0.96516 1.21060 0.99764 0.96418 0.96082 1.21063 0.98509 0.99718 0.94849 1.21071 0.98935 0.95059 0.99630 1.21120 1.00438 0.96458 0.96062 1.21040 0.97421 0.99083 0.94309 0.92689 0.94245 0.93729 0.90854 0.90563 0.92825 0.90463 0.93580 0.95154 0.91327 0.89356 0.94593 0.86594 0.86523 0.86585 0.86375 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.80 37.16 0.33 -2.14 16 2 C -0.09 -1.77 4.09 -26.74 -0.11 -1.88 16 3 C 0.09 1.67 2.61 -66.65 -0.17 1.50 16 4 H 0.03 0.59 7.77 -51.93 -0.40 0.18 16 5 C 0.01 0.18 2.43 -90.42 -0.22 -0.04 16 6 H 0.03 0.69 7.09 -51.93 -0.37 0.32 16 7 C -0.51 -13.74 8.09 -34.44 -0.28 -14.02 16 8 H 0.10 2.68 4.95 -52.49 -0.26 2.42 16 9 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 10 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 11 Si 0.87 21.61 24.86 -169.99 -4.23 17.39 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.27 -6.38 6.40 56.52 0.36 -6.02 16 15 C -0.13 -2.78 4.94 -24.87 -0.12 -2.90 16 16 C 0.04 0.70 5.68 -1.90 -0.01 0.69 16 17 N -0.50 -8.95 4.70 -224.01 -1.05 -10.00 16 18 C 0.07 1.09 4.40 -4.97 -0.02 1.06 16 19 C -0.06 -0.88 5.16 -104.62 -0.54 -1.42 16 20 C -0.11 -1.49 8.84 -39.59 -0.35 -1.84 16 21 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 22 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 24 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 25 H 0.05 0.82 5.83 -51.92 -0.30 0.51 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.54 6.92 -51.93 -0.36 1.18 16 29 H 0.08 1.66 7.30 -51.93 -0.38 1.28 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.08 1.80 7.86 -51.93 -0.41 1.39 16 32 H 0.05 0.97 6.16 -51.93 -0.32 0.65 16 33 H 0.03 0.51 7.81 -51.93 -0.41 0.10 16 34 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 35 H 0.09 1.25 5.16 -51.93 -0.27 0.98 16 36 H 0.04 0.52 7.77 -51.93 -0.40 0.12 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.50 7.97 -52.49 -0.42 1.09 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -29.12 311.73 -9.40 -38.52 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.42 Total: 2.12 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -3.17 Total: -26.23 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.28 Total: -36.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.23 Total: 17.39 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.12 -9.40 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.499 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds