Wall clock time and date at job start Mon Mar 30 2020 07:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47373 * 2 1 4 4 H 1.09004 * 109.90999 * 305.35464 * 3 2 1 5 5 C 1.53993 * 109.92020 * 184.04664 * 3 2 1 6 6 H 1.08999 * 110.31041 * 120.50249 * 5 3 2 7 7 C 1.50702 * 110.30436 * 358.43565 * 5 3 2 8 8 H 1.07997 * 120.00321 * 0.02562 * 7 5 3 9 9 C 1.37884 * 119.99973 * 180.02562 * 7 5 3 10 10 N 1.31512 * 120.00455 * 180.02562 * 9 7 5 11 11 Si 1.86803 * 119.99507 * 0.02562 * 9 7 5 12 12 H 1.48490 * 109.47435 * 90.00133 * 11 9 7 13 13 H 1.48509 * 109.46949 * 209.99854 * 11 9 7 14 14 H 1.48499 * 109.47490 * 329.99585 * 11 9 7 15 15 C 1.54592 * 105.14027 * 239.42592 * 5 3 2 16 16 C 1.54938 * 102.92378 * 338.03630 * 15 5 3 17 17 N 1.47903 * 109.91936 * 66.45389 * 3 2 1 18 18 C 1.46900 * 111.00116 * 265.20186 * 17 3 2 19 19 C 1.50704 * 109.46851 * 170.00035 * 18 17 3 20 20 C 1.38234 * 120.00277 * 90.00010 * 19 18 17 21 21 C 1.38230 * 119.99885 * 180.02562 * 20 19 18 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99518 * 270.01692 * 19 18 17 25 25 H 1.09010 * 109.47010 * 299.99585 * 1 2 3 26 26 H 1.08998 * 109.47258 * 59.99369 * 1 2 3 27 27 H 1.09003 * 109.47859 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46744 * 239.99977 * 2 1 3 29 29 H 1.09001 * 109.47202 * 120.00100 * 2 1 3 30 30 H 0.96996 * 120.00105 * 180.02562 * 10 9 7 31 31 H 1.08995 * 110.73186 * 96.39733 * 15 5 3 32 32 H 1.09003 * 110.72513 * 219.50512 * 15 5 3 33 33 H 1.09002 * 110.67159 * 278.98537 * 16 15 5 34 34 H 1.08995 * 110.67246 * 155.84930 * 16 15 5 35 35 H 1.08990 * 109.47288 * 49.99748 * 18 17 3 36 36 H 1.08997 * 109.46718 * 289.99381 * 18 17 3 37 37 H 1.07992 * 119.99701 * 359.97438 * 20 19 18 38 38 H 1.08000 * 120.00356 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.70664 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00423 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9901 -0.8359 5 6 3.5765 1.4556 -0.1022 6 1 3.8918 1.9983 -0.9934 7 6 4.1107 0.0468 -0.1323 8 1 3.4298 -0.7901 -0.0843 9 6 5.4689 -0.1738 -0.2212 10 7 5.9351 -1.4032 -0.2481 11 14 6.6466 1.2739 -0.3035 12 1 7.0509 1.6619 1.0716 13 1 7.8505 0.8889 -1.0833 14 1 5.9750 2.4216 -0.9645 15 6 4.0595 2.1877 1.1709 16 6 2.8160 3.0116 1.5897 17 7 1.6843 2.1027 1.2748 18 6 0.4272 2.8518 1.1468 19 6 -0.0299 3.3027 2.5102 20 6 0.3793 4.5261 3.0069 21 6 -0.0395 4.9393 4.2577 22 6 -0.8681 4.1294 5.0117 23 6 -1.2783 2.9065 4.5145 24 6 -0.8582 2.4926 3.2642 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 6.8906 -1.5583 -0.3103 31 1 4.3283 1.4728 1.9485 32 1 4.9008 2.8425 0.9436 33 1 2.7472 3.9287 1.0045 34 1 2.8442 3.2357 2.6560 35 1 -0.3340 2.2110 0.7019 36 1 0.5863 3.7225 0.5107 37 1 1.0270 5.1586 2.4180 38 1 0.2805 5.8949 4.6460 39 1 -1.1916 4.4502 5.9909 40 1 -1.9253 2.2736 5.1037 41 1 -1.1781 1.5369 2.8762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211466638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:27 Heat of formation + Delta-G solvation = 16.285769 kcal Electronic energy + Delta-G solvation = -19794.270675 eV Core-core repulsion = 17059.185302 eV Total energy + Delta-G solvation = -2735.085373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77949 -39.51181 -35.35524 -34.12181 -33.67522 -31.68753 -31.23600 -29.08532 -27.13475 -25.34366 -23.92647 -23.27618 -22.10941 -21.55028 -20.65830 -18.35311 -17.64964 -16.96370 -16.45480 -16.22230 -16.10386 -15.50420 -15.38656 -14.99048 -14.28206 -14.14456 -13.97592 -13.90688 -13.74799 -13.45474 -13.14108 -13.06551 -12.90269 -12.39645 -12.27397 -12.01573 -11.84340 -11.72781 -11.67583 -11.48709 -11.18413 -11.12435 -10.69367 -10.60360 -9.72654 -9.61003 -9.17828 -8.19604 -6.20737 0.51876 0.59700 1.33306 1.35345 1.43979 2.38463 2.85739 3.13510 3.34313 3.86171 3.98383 4.01973 4.18523 4.23216 4.27734 4.34188 4.34706 4.48780 4.50282 4.63718 4.68025 4.70560 4.77055 4.80634 4.85573 4.97733 5.07773 5.19128 5.19724 5.24761 5.27821 5.35722 5.48048 5.49453 5.65153 5.68993 5.71495 5.80081 5.82001 6.16958 6.20245 6.31539 6.46599 6.87080 7.43145 8.95149 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026491 B = 0.005832 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.717896 B = 4800.199874 C = 5408.038496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C 0.090 3.910 4 H 0.046 0.954 5 C 0.000 4.000 6 H 0.025 0.975 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.013 3.987 10 N -0.952 5.952 11 Si 0.930 3.070 12 H -0.271 1.271 13 H -0.298 1.298 14 H -0.249 1.249 15 C -0.129 4.129 16 C 0.051 3.949 17 N -0.509 5.509 18 C 0.077 3.923 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.115 4.115 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.044 0.956 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.363 13.474 6.930 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.018 4.018 4 H 0.064 0.936 5 C -0.020 4.020 6 H 0.044 0.956 7 C -0.543 4.543 8 H 0.086 0.914 9 C -0.183 4.183 10 N -0.594 5.594 11 Si 0.757 3.243 12 H -0.196 1.196 13 H -0.225 1.225 14 H -0.173 1.173 15 C -0.167 4.167 16 C -0.077 4.077 17 N -0.234 5.234 18 C -0.051 4.051 19 C -0.082 4.082 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.134 4.134 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.305 12.994 7.309 20.662 hybrid contribution 1.357 0.560 -0.814 1.679 sum -12.948 13.555 6.495 19.838 Atomic orbital electron populations 1.21942 0.95271 1.01493 1.01724 1.21311 0.94983 0.95484 1.00453 1.22145 0.94892 0.95161 0.89581 0.93570 1.20026 0.93177 0.95065 0.93722 0.95643 1.21725 0.92374 0.92683 1.47517 0.91426 1.25765 1.00187 0.97378 0.95004 1.70035 1.13831 1.21765 1.53784 0.86074 0.78472 0.81201 0.78601 1.19637 1.22525 1.17293 1.22801 0.96825 0.97896 0.99198 1.23103 0.90083 0.93843 1.00649 1.64649 1.01696 1.26599 1.30438 1.21450 0.92973 0.97024 0.93616 1.19825 0.97380 0.94681 0.96293 1.21223 1.00084 0.96240 0.96849 1.21383 0.98135 1.00684 0.94366 1.21444 0.98130 0.94604 1.00596 1.21415 1.00466 0.97078 0.95713 1.21195 0.97835 0.99263 0.95106 0.91648 0.92494 0.92913 0.93453 0.93942 0.92992 0.93070 0.92990 0.93126 0.90347 0.88739 0.93754 0.85986 0.84325 0.84057 0.84426 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 8.80 71.98 0.63 -3.75 16 2 C -0.08 -3.33 4.09 30.59 0.13 -3.20 16 3 C 0.09 3.47 2.61 45.06 0.12 3.59 16 4 H 0.05 1.64 7.77 -2.38 -0.02 1.63 16 5 C 0.00 -0.02 2.43 -10.66 -0.03 -0.05 16 6 H 0.03 1.19 7.09 -2.39 -0.02 1.17 16 7 C -0.51 -28.07 8.09 25.60 0.21 -27.87 16 8 H 0.07 4.05 4.95 -2.91 -0.01 4.04 16 9 C 0.01 0.74 5.46 84.66 0.46 1.20 16 10 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 11 Si 0.93 44.91 24.86 68.60 1.71 46.62 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 14 H -0.25 -11.14 6.40 99.48 0.64 -10.50 16 15 C -0.13 -5.40 4.94 31.80 0.16 -5.24 16 16 C 0.05 1.71 5.68 86.65 0.49 2.21 16 17 N -0.51 -17.38 4.70 -862.62 -4.06 -21.44 16 18 C 0.08 2.09 4.40 85.56 0.38 2.47 16 19 C -0.08 -2.08 5.16 -19.86 -0.10 -2.18 16 20 C -0.13 -2.90 8.84 22.27 0.20 -2.70 16 21 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 22 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 23 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 24 C -0.12 -2.79 9.70 22.27 0.22 -2.58 16 25 H 0.06 1.82 5.83 -2.38 -0.01 1.81 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 2.07 6.92 -2.38 -0.02 2.05 16 29 H 0.04 1.93 7.30 -2.39 -0.02 1.91 16 30 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.05 2.39 7.86 -2.39 -0.02 2.37 16 32 H 0.05 2.09 6.16 -2.39 -0.01 2.07 16 33 H 0.05 1.52 7.81 -2.39 -0.02 1.50 16 34 H 0.08 2.52 7.85 -2.39 -0.02 2.50 16 35 H 0.09 2.43 5.16 -2.39 -0.01 2.42 16 36 H 0.04 1.14 7.77 -2.39 -0.02 1.12 16 37 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.12 2.82 7.97 -2.91 -0.02 2.80 16 Total: -1.00 -64.28 311.73 2.40 -61.88 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.92 Total: 17.54 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 3.53 Total: -45.09 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.76 Total: -80.95 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.71 Total: 46.62 kcal Total: -64.28 2.40 -61.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.170 kcal (2) G-P(sol) polarization free energy of solvation -64.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds