Wall clock time and date at job start Mon Mar 30 2020 07:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47494 * 2 1 4 4 H 1.09002 * 110.00838 * 303.61181 * 3 2 1 5 5 C 1.54319 * 109.88752 * 64.72011 * 3 2 1 6 6 H 1.09003 * 110.70695 * 23.13361 * 5 3 2 7 7 C 1.50707 * 110.70543 * 260.07275 * 5 3 2 8 8 H 1.07990 * 119.99888 * 0.02562 * 7 5 3 9 9 C 1.37882 * 119.99655 * 179.97438 * 7 5 3 10 10 N 1.31515 * 120.00062 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 119.99526 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47095 * 60.00480 * 11 9 7 13 13 H 1.48504 * 109.46772 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47230 * 299.99932 * 11 9 7 15 15 C 1.55137 * 103.02155 * 141.69282 * 5 3 2 16 16 C 1.54916 * 101.64947 * 324.34677 * 15 5 3 17 17 N 1.47436 * 109.89258 * 182.49055 * 3 2 1 18 18 C 1.46904 * 110.99921 * 3.85334 * 17 3 2 19 19 C 1.50693 * 109.47367 * 174.56748 * 18 17 3 20 20 C 1.38237 * 120.00549 * 89.99902 * 19 18 17 21 21 C 1.38228 * 120.00277 * 180.02562 * 20 19 18 22 22 C 1.38231 * 120.00123 * 0.24850 * 21 20 19 23 23 C 1.38239 * 120.00127 * 359.49415 * 22 21 20 24 24 C 1.38233 * 119.99581 * 0.48626 * 23 22 21 25 25 H 1.09004 * 109.47220 * 294.29083 * 1 2 3 26 26 H 1.09005 * 109.47387 * 54.28497 * 1 2 3 27 27 H 1.08994 * 109.47511 * 174.28893 * 1 2 3 28 28 H 1.08999 * 109.47141 * 240.00144 * 2 1 3 29 29 H 1.09000 * 109.46727 * 120.00365 * 2 1 3 30 30 H 0.97004 * 119.99776 * 179.97438 * 10 9 7 31 31 H 1.08996 * 110.99241 * 82.43417 * 15 5 3 32 32 H 1.08999 * 110.99661 * 206.22177 * 15 5 3 33 33 H 1.09001 * 110.37032 * 278.23994 * 16 15 5 34 34 H 1.08999 * 110.37110 * 155.89723 * 16 15 5 35 35 H 1.09001 * 109.47102 * 54.56063 * 18 17 3 36 36 H 1.09006 * 109.46741 * 294.56304 * 18 17 3 37 37 H 1.08008 * 119.99541 * 359.97438 * 20 19 18 38 38 H 1.08008 * 120.00056 * 179.97438 * 21 20 19 39 39 H 1.08009 * 120.00082 * 179.72996 * 22 21 20 40 40 H 1.07990 * 120.00173 * 180.24981 * 23 22 21 41 41 H 1.07999 * 119.99922 * 179.76311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6299 1.9831 -0.8530 5 6 1.6308 2.1440 1.3122 6 1 1.4478 1.4126 2.0994 7 6 0.4152 3.0085 1.0975 8 1 -0.0406 3.0662 0.1202 9 6 -0.1156 3.7250 2.1492 10 7 0.4386 3.6535 3.3397 11 14 -1.6228 4.7960 1.8833 12 1 -2.7529 3.9531 1.4168 13 1 -1.9927 5.4559 3.1611 14 1 -1.3212 5.8299 0.8608 15 6 2.8712 3.0145 1.6447 16 6 4.0294 2.1061 1.1618 17 7 3.5132 1.4536 -0.0602 18 6 4.0449 0.0908 -0.1941 19 6 5.5383 0.1508 -0.3862 20 6 6.3783 0.1224 0.7114 21 6 7.7481 0.1780 0.5351 22 6 8.2780 0.2673 -0.7385 23 6 7.4384 0.2904 -1.8365 24 6 6.0685 0.2343 -1.6602 25 1 -0.3634 0.4228 0.9367 26 1 -0.3634 0.5999 -0.8344 27 1 -0.3634 -1.0225 -0.1023 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.0654 4.1578 4.0795 31 1 2.8514 3.9512 1.0877 32 1 2.9414 3.2012 2.7163 33 1 4.2669 1.3592 1.9194 34 1 4.9098 2.7052 0.9291 35 1 3.5869 -0.3950 -1.0557 36 1 3.8172 -0.4782 0.7074 37 1 5.9640 0.0575 1.7067 38 1 8.4043 0.1562 1.3927 39 1 9.3483 0.3152 -0.8760 40 1 7.8526 0.3561 -2.8316 41 1 5.4124 0.2562 -2.5178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211466710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:29 Heat of formation + Delta-G solvation = 20.732903 kcal Electronic energy + Delta-G solvation = -19651.590674 eV Core-core repulsion = 16916.698143 eV Total energy + Delta-G solvation = -2734.892530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.55623 -38.19010 -33.57546 -32.56677 -31.79066 -30.74849 -29.41916 -27.18903 -25.37857 -24.09984 -22.47396 -21.99658 -21.14440 -19.79546 -18.48128 -16.55826 -16.49372 -15.26439 -15.12720 -14.96769 -14.51666 -14.14540 -13.77763 -13.34756 -13.14492 -12.74608 -12.67836 -12.38668 -12.02548 -11.65638 -11.48031 -11.04598 -10.98189 -10.91621 -10.76708 -10.67998 -10.50900 -10.49556 -10.22746 -9.98895 -9.58875 -9.11264 -8.85243 -8.76394 -8.54364 -8.36112 -7.50315 -6.00492 -4.01822 1.50281 1.54936 3.32852 3.37691 3.40418 3.90722 4.44818 4.80460 4.98095 5.03675 5.13047 5.24790 5.32249 5.49705 5.62261 5.65769 5.70485 5.82955 5.86844 5.97783 6.06602 6.15745 6.18533 6.25345 6.35976 6.44510 6.52339 6.56549 6.61300 6.62269 6.77552 6.84071 6.89872 7.11086 7.14624 7.23222 7.27743 7.62972 7.65929 7.84071 7.92917 8.02955 8.44561 8.99083 9.61332 11.09547 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032101 B = 0.005042 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.035917 B = 5551.695847 C = 5990.415832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.073 3.927 4 H 0.078 0.922 5 C 0.046 3.954 6 H 0.032 0.968 7 C -0.503 4.503 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.888 3.112 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.108 4.108 16 C 0.040 3.960 17 N -0.522 5.522 18 C 0.083 3.917 19 C -0.065 4.065 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.103 4.103 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.259 0.741 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 -7.903 -6.330 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.034 4.034 4 H 0.096 0.904 5 C 0.026 3.974 6 H 0.050 0.950 7 C -0.542 4.542 8 H 0.074 0.926 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.147 4.147 16 C -0.087 4.087 17 N -0.246 5.246 18 C -0.045 4.045 19 C -0.066 4.066 20 C -0.132 4.132 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.731 -7.555 -6.582 14.682 hybrid contribution -0.987 0.237 0.695 1.230 sum 9.744 -7.319 -5.887 13.534 Atomic orbital electron populations 1.21666 0.95294 0.99341 1.03653 1.22033 0.97046 0.97761 0.99988 1.22735 0.84729 0.94406 1.01580 0.90395 1.19836 0.93339 0.93706 0.90479 0.94990 1.21001 1.11304 1.26388 0.95468 0.92572 1.24950 0.96934 0.96733 0.95228 1.69949 1.40615 1.41937 1.00485 0.86728 0.83527 0.80881 0.77285 1.20328 1.21458 1.20296 1.22662 0.93763 0.97795 1.00496 1.23134 0.98846 0.97019 0.89742 1.63829 1.07841 1.14872 1.38021 1.21308 0.89943 0.92206 1.01022 1.19978 0.95753 0.97740 0.93108 1.21128 0.93373 1.00098 0.98575 1.21080 0.95138 1.00821 0.97069 1.21062 0.99359 1.01520 0.92879 1.21099 0.93700 1.00938 0.98529 1.21026 0.94860 0.99361 0.96879 0.90803 0.93065 0.94674 0.93149 0.92957 0.93083 0.92577 0.91342 0.95107 0.92307 0.90100 0.94084 0.86387 0.86481 0.86634 0.86484 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.30 37.16 0.35 -2.18 16 2 C -0.13 -2.31 4.08 -26.73 -0.11 -2.42 16 3 C 0.07 1.48 3.09 -66.73 -0.21 1.28 16 4 H 0.08 1.71 7.63 -51.93 -0.40 1.31 16 5 C 0.05 1.10 1.65 -89.95 -0.15 0.95 16 6 H 0.03 0.85 7.77 -51.93 -0.40 0.44 16 7 C -0.50 -13.27 7.48 -34.44 -0.26 -13.52 16 8 H 0.06 1.47 7.53 -52.49 -0.40 1.08 16 9 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 10 N -0.89 -25.20 12.49 55.43 0.69 -24.51 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.11 -2.53 5.94 -24.59 -0.15 -2.68 16 16 C 0.04 0.79 5.49 -2.29 -0.01 0.78 16 17 N -0.52 -9.87 5.19 -224.78 -1.17 -11.04 16 18 C 0.08 1.32 3.84 -4.98 -0.02 1.30 16 19 C -0.07 -0.97 5.01 -104.62 -0.52 -1.49 16 20 C -0.11 -1.58 8.75 -39.59 -0.35 -1.93 16 21 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 22 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 24 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 25 H 0.07 1.52 7.06 -51.93 -0.37 1.15 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.80 6.28 -51.93 -0.33 0.47 16 29 H 0.05 0.94 6.96 -51.93 -0.36 0.58 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 32 H 0.07 1.71 7.76 -51.93 -0.40 1.30 16 33 H 0.03 0.58 6.70 -51.93 -0.35 0.24 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.21 6.23 -51.93 -0.32 0.89 16 36 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 37 H 0.12 1.61 7.28 -52.48 -0.38 1.23 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -27.67 319.29 -10.35 -38.02 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.57 Total: 2.46 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.10 Total: -25.79 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.47 Total: -35.55 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.67 -10.35 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.753 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds