Wall clock time and date at job start Mon Mar 30 2020 07:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47494 * 2 1 4 4 H 1.09002 * 110.00838 * 303.61181 * 3 2 1 5 5 C 1.54319 * 109.88752 * 64.72011 * 3 2 1 6 6 H 1.09003 * 110.70695 * 23.13361 * 5 3 2 7 7 C 1.50707 * 110.70543 * 260.07275 * 5 3 2 8 8 H 1.07990 * 119.99888 * 0.02562 * 7 5 3 9 9 C 1.37882 * 119.99655 * 179.97438 * 7 5 3 10 10 N 1.31515 * 120.00062 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 119.99526 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47095 * 60.00480 * 11 9 7 13 13 H 1.48504 * 109.46772 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47230 * 299.99932 * 11 9 7 15 15 C 1.55137 * 103.02155 * 141.69282 * 5 3 2 16 16 C 1.54916 * 101.64947 * 324.34677 * 15 5 3 17 17 N 1.47436 * 109.89258 * 182.49055 * 3 2 1 18 18 C 1.46904 * 110.99921 * 3.85334 * 17 3 2 19 19 C 1.50693 * 109.47367 * 174.56748 * 18 17 3 20 20 C 1.38237 * 120.00549 * 89.99902 * 19 18 17 21 21 C 1.38228 * 120.00277 * 180.02562 * 20 19 18 22 22 C 1.38231 * 120.00123 * 0.24850 * 21 20 19 23 23 C 1.38239 * 120.00127 * 359.49415 * 22 21 20 24 24 C 1.38233 * 119.99581 * 0.48626 * 23 22 21 25 25 H 1.09004 * 109.47220 * 294.29083 * 1 2 3 26 26 H 1.09005 * 109.47387 * 54.28497 * 1 2 3 27 27 H 1.08994 * 109.47511 * 174.28893 * 1 2 3 28 28 H 1.08999 * 109.47141 * 240.00144 * 2 1 3 29 29 H 1.09000 * 109.46727 * 120.00365 * 2 1 3 30 30 H 0.97004 * 119.99776 * 179.97438 * 10 9 7 31 31 H 1.08996 * 110.99241 * 82.43417 * 15 5 3 32 32 H 1.08999 * 110.99661 * 206.22177 * 15 5 3 33 33 H 1.09001 * 110.37032 * 278.23994 * 16 15 5 34 34 H 1.08999 * 110.37110 * 155.89723 * 16 15 5 35 35 H 1.09001 * 109.47102 * 54.56063 * 18 17 3 36 36 H 1.09006 * 109.46741 * 294.56304 * 18 17 3 37 37 H 1.08008 * 119.99541 * 359.97438 * 20 19 18 38 38 H 1.08008 * 120.00056 * 179.97438 * 21 20 19 39 39 H 1.08009 * 120.00082 * 179.72996 * 22 21 20 40 40 H 1.07990 * 120.00173 * 180.24981 * 23 22 21 41 41 H 1.07999 * 119.99922 * 179.76311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6299 1.9831 -0.8530 5 6 1.6308 2.1440 1.3122 6 1 1.4478 1.4126 2.0994 7 6 0.4152 3.0085 1.0975 8 1 -0.0406 3.0662 0.1202 9 6 -0.1156 3.7250 2.1492 10 7 0.4386 3.6535 3.3397 11 14 -1.6228 4.7960 1.8833 12 1 -2.7529 3.9531 1.4168 13 1 -1.9927 5.4559 3.1611 14 1 -1.3212 5.8299 0.8608 15 6 2.8712 3.0145 1.6447 16 6 4.0294 2.1061 1.1618 17 7 3.5132 1.4536 -0.0602 18 6 4.0449 0.0908 -0.1941 19 6 5.5383 0.1508 -0.3862 20 6 6.3783 0.1224 0.7114 21 6 7.7481 0.1780 0.5351 22 6 8.2780 0.2673 -0.7385 23 6 7.4384 0.2904 -1.8365 24 6 6.0685 0.2343 -1.6602 25 1 -0.3634 0.4228 0.9367 26 1 -0.3634 0.5999 -0.8344 27 1 -0.3634 -1.0225 -0.1023 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 0.0654 4.1578 4.0795 31 1 2.8514 3.9512 1.0877 32 1 2.9414 3.2012 2.7163 33 1 4.2669 1.3592 1.9194 34 1 4.9098 2.7052 0.9291 35 1 3.5869 -0.3950 -1.0557 36 1 3.8172 -0.4782 0.7074 37 1 5.9640 0.0575 1.7067 38 1 8.4043 0.1562 1.3927 39 1 9.3483 0.3152 -0.8760 40 1 7.8526 0.3561 -2.8316 41 1 5.4124 0.2562 -2.5178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211466710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:29 Heat of formation + Delta-G solvation = 6.431804 kcal Electronic energy + Delta-G solvation = -19652.210816 eV Core-core repulsion = 16916.698143 eV Total energy + Delta-G solvation = -2735.512673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88030 -39.47173 -35.30839 -34.13027 -33.37993 -31.70557 -30.89732 -28.92331 -26.90919 -25.76561 -23.65962 -23.38912 -22.37104 -21.50472 -20.03356 -18.54110 -17.48527 -16.78688 -16.48969 -16.37671 -16.10403 -15.57643 -15.25019 -14.72564 -14.33838 -14.10276 -14.02893 -13.90638 -13.38250 -13.15221 -13.01216 -12.87919 -12.71361 -12.56596 -12.34090 -12.17895 -12.02589 -11.89976 -11.69106 -11.52543 -11.40056 -10.89345 -10.80780 -10.44125 -9.73424 -9.60202 -9.03878 -8.09883 -6.16719 0.51128 0.58611 1.42428 1.43163 1.50242 2.44920 2.87424 3.22093 3.36618 3.88862 4.00988 4.06369 4.17423 4.23026 4.27727 4.34513 4.41855 4.51531 4.54217 4.63646 4.67208 4.78907 4.84412 4.90921 4.98928 5.00232 5.12729 5.16356 5.20643 5.24141 5.37752 5.49718 5.59386 5.63674 5.65050 5.68484 5.75234 5.81675 5.93887 6.18972 6.22226 6.35910 6.41822 6.90842 7.49257 8.99576 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032101 B = 0.005042 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.035917 B = 5551.695847 C = 5990.415832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.080 3.920 4 H 0.064 0.936 5 C 0.044 3.956 6 H 0.002 0.998 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.014 3.986 10 N -0.922 5.922 11 Si 0.947 3.053 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.273 1.273 15 C -0.106 4.106 16 C 0.058 3.942 17 N -0.525 5.525 18 C 0.087 3.913 19 C -0.086 4.086 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.258 0.742 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 -8.760 -8.042 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C -0.028 4.028 4 H 0.082 0.918 5 C 0.025 3.975 6 H 0.020 0.980 7 C -0.549 4.549 8 H 0.072 0.928 9 C -0.185 4.185 10 N -0.562 5.562 11 Si 0.773 3.227 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.144 4.144 16 C -0.070 4.070 17 N -0.248 5.248 18 C -0.040 4.040 19 C -0.086 4.086 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.132 4.132 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.954 -8.421 -8.309 16.819 hybrid contribution -1.288 0.480 1.211 1.832 sum 10.666 -7.942 -7.098 15.073 Atomic orbital electron populations 1.21601 0.95360 1.00872 1.01649 1.21969 0.96889 0.96015 1.01205 1.22508 0.85943 0.95663 0.98655 0.91767 1.19734 0.93028 0.93143 0.91592 0.98011 1.21303 1.11992 1.26326 0.95268 0.92776 1.25676 0.99633 0.98097 0.95049 1.70077 1.42016 1.42953 1.01159 0.85781 0.80481 0.79310 0.77121 1.19513 1.21387 1.19860 1.22485 0.95553 0.97688 0.98715 1.22915 0.97381 0.96460 0.90227 1.63788 1.06727 1.17128 1.37163 1.21317 0.91212 0.90185 1.01293 1.19916 0.94827 0.99796 0.94081 1.21218 0.94377 1.00992 0.98219 1.21372 0.94670 1.00142 0.98428 1.21458 1.00929 0.99902 0.92326 1.21442 0.93100 0.99803 1.00049 1.21209 0.95970 0.99523 0.96531 0.94273 0.93159 0.91721 0.90232 0.93221 0.93297 0.94403 0.93795 0.94527 0.91524 0.88789 0.94535 0.86951 0.84499 0.83779 0.83919 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.30 71.98 0.67 -4.12 16 2 C -0.12 -4.23 4.08 30.59 0.12 -4.11 16 3 C 0.08 3.27 3.09 45.26 0.14 3.41 16 4 H 0.06 2.81 7.63 -2.39 -0.02 2.80 16 5 C 0.04 2.20 1.65 -10.36 -0.02 2.18 16 6 H 0.00 0.10 7.77 -2.39 -0.02 0.08 16 7 C -0.51 -27.62 7.48 25.60 0.19 -27.43 16 8 H 0.05 2.89 7.53 -2.92 -0.02 2.86 16 9 C 0.01 0.77 5.36 84.66 0.45 1.22 16 10 N -0.92 -53.83 12.49 21.45 0.27 -53.57 16 11 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 C -0.11 -5.11 5.94 31.98 0.19 -4.92 16 16 C 0.06 2.29 5.49 86.78 0.48 2.76 16 17 N -0.52 -19.56 5.19 -865.06 -4.49 -24.05 16 18 C 0.09 2.67 3.84 85.55 0.33 2.99 16 19 C -0.09 -2.40 5.01 -19.87 -0.10 -2.50 16 20 C -0.13 -3.45 8.75 22.27 0.19 -3.26 16 21 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 22 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 23 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 24 C -0.11 -2.82 9.70 22.27 0.22 -2.61 16 25 H 0.04 1.62 7.06 -2.38 -0.02 1.61 16 26 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.08 2.31 6.28 -2.39 -0.01 2.29 16 29 H 0.05 1.75 6.96 -2.39 -0.02 1.73 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 31 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 32 H 0.04 2.29 7.76 -2.39 -0.02 2.27 16 33 H 0.04 1.40 6.70 -2.39 -0.02 1.39 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 35 H 0.09 2.60 6.23 -2.39 -0.01 2.58 16 36 H 0.04 1.15 6.71 -2.38 -0.02 1.14 16 37 H 0.11 3.02 7.28 -2.91 -0.02 3.00 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.14 2.18 8.06 -2.92 -0.02 2.15 16 41 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -60.56 319.29 2.33 -58.23 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.99 Total: 17.26 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 3.54 Total: -43.73 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -4.22 Total: -77.61 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.56 2.33 -58.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.664 kcal (2) G-P(sol) polarization free energy of solvation -60.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds