Wall clock time and date at job start Mon Mar 30 2020 07:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47168 * 2 1 4 4 H 1.09000 * 110.06910 * 305.99790 * 3 2 1 5 5 C 1.53998 * 109.91758 * 184.79553 * 3 2 1 6 6 H 1.08999 * 110.30466 * 358.43531 * 5 3 2 7 7 C 1.50694 * 110.30738 * 120.50812 * 5 3 2 8 8 H 1.07998 * 120.00278 * 359.97438 * 7 5 3 9 9 C 1.37881 * 119.99792 * 179.97438 * 7 5 3 10 10 N 1.31515 * 119.99760 * 179.97438 * 9 7 5 11 11 Si 1.86802 * 119.99959 * 359.97438 * 9 7 5 12 12 H 1.48501 * 109.46988 * 270.00068 * 11 9 7 13 13 H 1.48502 * 109.47239 * 30.00069 * 11 9 7 14 14 H 1.48506 * 109.47012 * 149.99877 * 11 9 7 15 15 C 1.54601 * 105.13893 * 239.42313 * 5 3 2 16 16 C 1.54934 * 102.92094 * 338.04208 * 15 5 3 17 17 N 1.47901 * 109.91536 * 67.20723 * 3 2 1 18 18 C 1.46905 * 110.99889 * 265.19192 * 17 3 2 19 19 C 1.50699 * 109.47187 * 184.09121 * 18 17 3 20 20 C 1.38238 * 120.00162 * 269.73233 * 19 18 17 21 21 C 1.38233 * 119.99861 * 179.76732 * 20 19 18 22 22 C 1.38228 * 120.00297 * 0.48033 * 21 20 19 23 23 C 1.38239 * 119.99860 * 359.79517 * 22 21 20 24 24 C 1.38231 * 119.99764 * 359.95315 * 23 22 21 25 25 H 1.09001 * 109.47041 * 52.73205 * 1 2 3 26 26 H 1.09006 * 109.47494 * 172.73288 * 1 2 3 27 27 H 1.08999 * 109.47376 * 292.73088 * 1 2 3 28 28 H 1.09000 * 109.47236 * 239.99711 * 2 1 3 29 29 H 1.09006 * 109.46752 * 120.00299 * 2 1 3 30 30 H 0.97006 * 119.99632 * 179.97438 * 10 9 7 31 31 H 1.09004 * 110.72455 * 96.40128 * 15 5 3 32 32 H 1.09002 * 110.72420 * 219.68302 * 15 5 3 33 33 H 1.09003 * 110.67096 * 278.97834 * 16 15 5 34 34 H 1.09000 * 110.81078 * 155.91660 * 16 15 5 35 35 H 1.08993 * 109.47626 * 304.09413 * 18 17 3 36 36 H 1.09001 * 109.46627 * 64.09332 * 18 17 3 37 37 H 1.08002 * 119.99741 * 359.97438 * 20 19 18 38 38 H 1.08001 * 119.99720 * 180.24972 * 21 20 19 39 39 H 1.08003 * 120.00240 * 179.76952 * 22 21 20 40 40 H 1.07996 * 119.99980 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00058 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9957 -0.8283 5 6 3.5751 1.4561 -0.1210 6 1 3.9612 0.4373 -0.1521 7 6 3.9957 2.2119 -1.3551 8 1 3.2489 2.6470 -2.0026 9 6 5.3341 2.3477 -1.6575 10 7 5.7011 3.0068 -2.7348 11 14 6.6258 1.5956 -0.5372 12 1 7.0154 2.5827 0.5017 13 1 6.0696 0.3833 0.1157 14 1 7.8195 1.2229 -1.3383 15 6 4.0738 2.1827 1.1492 16 6 2.8356 3.0047 1.5868 17 7 1.7000 2.0970 1.2820 18 6 0.4415 2.8468 1.1727 19 6 0.1798 3.5799 2.4632 20 6 -0.5458 2.9703 3.4695 21 6 -0.7817 3.6409 4.6551 22 6 -0.3005 4.9248 4.8305 23 6 0.4203 5.5366 3.8219 24 6 0.6606 4.8640 2.6384 25 1 -0.3633 0.6223 -0.8178 26 1 -0.3634 -1.0194 -0.1300 27 1 -0.3634 0.3971 0.9478 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 6.6427 3.1027 -2.9473 31 1 4.3521 1.4643 1.9203 32 1 4.9102 2.8409 0.9138 33 1 2.7595 3.9243 1.0065 34 1 2.8751 3.2265 2.6533 35 1 0.5158 3.5645 0.3558 36 1 -0.3775 2.1551 0.9753 37 1 -0.9256 1.9688 3.3308 38 1 -1.3452 3.1631 5.4429 39 1 -0.4879 5.4501 5.7553 40 1 0.7959 6.5398 3.9587 41 1 1.2241 5.3417 1.8505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211466790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:32 Heat of formation + Delta-G solvation = 21.931800 kcal Electronic energy + Delta-G solvation = -19779.170749 eV Core-core repulsion = 17044.330207 eV Total energy + Delta-G solvation = -2734.840542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.55579 -38.19656 -33.62550 -32.84138 -31.88182 -30.78250 -29.75956 -27.56210 -25.84340 -23.77792 -22.60733 -21.94105 -20.89958 -20.07179 -19.09990 -16.72077 -16.34607 -15.46346 -15.27951 -15.09733 -14.52544 -14.32229 -13.76624 -13.31408 -13.15783 -12.96794 -12.53662 -12.44729 -12.41387 -12.19125 -11.82207 -11.38837 -11.26460 -11.11209 -10.89845 -10.65217 -10.46080 -10.38911 -10.05419 -9.96385 -9.72406 -9.36441 -8.97346 -8.80543 -8.64181 -8.55021 -7.77415 -6.08851 -4.07786 1.45576 1.51193 3.27805 3.37860 3.41367 3.86247 4.41199 4.70057 4.93022 4.98667 5.08498 5.19212 5.23361 5.47516 5.51413 5.60723 5.64654 5.68639 5.75208 5.83050 5.94525 5.99626 6.13781 6.16698 6.18925 6.28848 6.35796 6.39457 6.53680 6.56340 6.59092 6.64807 6.74540 6.78116 6.85272 6.97367 7.08988 7.11737 7.40151 7.49933 7.68971 7.85290 8.50470 8.93812 9.53805 11.04024 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.006132 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.468835 B = 4565.076473 C = 5224.935951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C 0.080 3.920 4 H 0.053 0.947 5 C 0.011 3.989 6 H 0.037 0.963 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.879 3.121 12 H -0.277 1.277 13 H -0.262 1.262 14 H -0.294 1.294 15 C -0.132 4.132 16 C 0.051 3.949 17 N -0.508 5.508 18 C 0.076 3.924 19 C -0.067 4.067 20 C -0.102 4.102 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.112 4.112 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.263 0.737 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 0.353 12.285 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.028 4.028 4 H 0.071 0.929 5 C -0.008 4.008 6 H 0.055 0.945 7 C -0.548 4.548 8 H 0.089 0.911 9 C -0.131 4.131 10 N -0.540 5.540 11 Si 0.707 3.293 12 H -0.203 1.203 13 H -0.187 1.187 14 H -0.220 1.220 15 C -0.171 4.171 16 C -0.077 4.077 17 N -0.232 5.232 18 C -0.052 4.052 19 C -0.068 4.068 20 C -0.121 4.121 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.131 4.131 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.487 0.017 12.561 17.022 hybrid contribution 0.946 0.425 -0.105 1.042 sum -10.541 0.441 12.456 16.324 Atomic orbital electron populations 1.21885 0.97178 1.00426 1.01244 1.21500 0.94589 0.96756 1.01518 1.22496 0.97507 0.93768 0.89009 0.92905 1.20031 0.90333 0.96757 0.93705 0.94503 1.21081 0.92903 1.33971 1.06814 0.91088 1.24991 0.98537 0.94554 0.94973 1.69909 1.16689 1.41650 1.25712 0.86915 0.81147 0.80545 0.80709 1.20341 1.18662 1.22048 1.22903 0.96886 0.98717 0.98571 1.23019 0.90777 0.94859 0.99030 1.64811 1.00905 1.26283 1.31210 1.21406 0.94838 0.96096 0.92861 1.19895 0.96685 0.93956 0.96217 1.21010 0.98523 0.99468 0.93091 1.21093 1.00608 0.95118 0.97476 1.21073 0.99176 0.95564 0.98879 1.21094 0.99232 0.99852 0.93850 1.21172 0.99380 0.94723 0.97794 0.93427 0.93759 0.92486 0.91886 0.91993 0.92699 0.93514 0.91530 0.93825 0.91863 0.94026 0.89710 0.86169 0.86479 0.86603 0.86401 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.74 37.16 0.32 -1.80 16 2 C -0.11 -1.81 5.38 -26.74 -0.14 -1.95 16 3 C 0.08 1.58 2.25 -66.64 -0.15 1.43 16 4 H 0.05 1.13 6.91 -51.93 -0.36 0.77 16 5 C 0.01 0.26 2.07 -90.41 -0.19 0.07 16 6 H 0.04 0.88 6.63 -51.93 -0.34 0.54 16 7 C -0.51 -14.02 9.07 -34.44 -0.31 -14.34 16 8 H 0.07 2.13 7.59 -52.49 -0.40 1.73 16 9 C 0.07 2.02 5.36 -17.82 -0.10 1.92 16 10 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 11 Si 0.88 21.66 24.84 -169.99 -4.22 17.43 16 12 H -0.28 -6.67 6.97 56.52 0.39 -6.28 16 13 H -0.26 -6.23 6.49 56.52 0.37 -5.86 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 15 C -0.13 -2.87 5.14 -24.87 -0.13 -3.00 16 16 C 0.05 0.97 5.07 -1.90 -0.01 0.96 16 17 N -0.51 -9.10 4.86 -224.00 -1.09 -10.19 16 18 C 0.08 1.18 4.66 -4.97 -0.02 1.16 16 19 C -0.07 -0.96 4.78 -104.62 -0.50 -1.46 16 20 C -0.10 -1.32 9.70 -39.58 -0.38 -1.71 16 21 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 22 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 24 C -0.11 -1.56 8.45 -39.59 -0.33 -1.89 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.78 6.25 -51.93 -0.32 0.45 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.55 5.43 -51.93 -0.28 1.27 16 33 H 0.04 0.87 7.48 -51.93 -0.39 0.48 16 34 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 35 H 0.04 0.69 7.92 -51.93 -0.41 0.28 16 36 H 0.08 1.21 5.30 -51.93 -0.28 0.93 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.67 7.56 -52.48 -0.40 1.28 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -29.38 315.07 -9.49 -38.87 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.56 Total: 1.90 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -3.14 Total: -26.19 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.31 Total: -36.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.22 Total: 17.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.38 -9.49 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.797 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds