Wall clock time and date at job start Mon Mar 30 2020 07:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47168 * 2 1 4 4 H 1.09000 * 110.06910 * 305.99790 * 3 2 1 5 5 C 1.53998 * 109.91758 * 184.79553 * 3 2 1 6 6 H 1.08999 * 110.30466 * 358.43531 * 5 3 2 7 7 C 1.50694 * 110.30738 * 120.50812 * 5 3 2 8 8 H 1.07998 * 120.00278 * 359.97438 * 7 5 3 9 9 C 1.37881 * 119.99792 * 179.97438 * 7 5 3 10 10 N 1.31515 * 119.99760 * 179.97438 * 9 7 5 11 11 Si 1.86802 * 119.99959 * 359.97438 * 9 7 5 12 12 H 1.48501 * 109.46988 * 270.00068 * 11 9 7 13 13 H 1.48502 * 109.47239 * 30.00069 * 11 9 7 14 14 H 1.48506 * 109.47012 * 149.99877 * 11 9 7 15 15 C 1.54601 * 105.13893 * 239.42313 * 5 3 2 16 16 C 1.54934 * 102.92094 * 338.04208 * 15 5 3 17 17 N 1.47901 * 109.91536 * 67.20723 * 3 2 1 18 18 C 1.46905 * 110.99889 * 265.19192 * 17 3 2 19 19 C 1.50699 * 109.47187 * 184.09121 * 18 17 3 20 20 C 1.38238 * 120.00162 * 269.73233 * 19 18 17 21 21 C 1.38233 * 119.99861 * 179.76732 * 20 19 18 22 22 C 1.38228 * 120.00297 * 0.48033 * 21 20 19 23 23 C 1.38239 * 119.99860 * 359.79517 * 22 21 20 24 24 C 1.38231 * 119.99764 * 359.95315 * 23 22 21 25 25 H 1.09001 * 109.47041 * 52.73205 * 1 2 3 26 26 H 1.09006 * 109.47494 * 172.73288 * 1 2 3 27 27 H 1.08999 * 109.47376 * 292.73088 * 1 2 3 28 28 H 1.09000 * 109.47236 * 239.99711 * 2 1 3 29 29 H 1.09006 * 109.46752 * 120.00299 * 2 1 3 30 30 H 0.97006 * 119.99632 * 179.97438 * 10 9 7 31 31 H 1.09004 * 110.72455 * 96.40128 * 15 5 3 32 32 H 1.09002 * 110.72420 * 219.68302 * 15 5 3 33 33 H 1.09003 * 110.67096 * 278.97834 * 16 15 5 34 34 H 1.09000 * 110.81078 * 155.91660 * 16 15 5 35 35 H 1.08993 * 109.47626 * 304.09413 * 18 17 3 36 36 H 1.09001 * 109.46627 * 64.09332 * 18 17 3 37 37 H 1.08002 * 119.99741 * 359.97438 * 20 19 18 38 38 H 1.08001 * 119.99720 * 180.24972 * 21 20 19 39 39 H 1.08003 * 120.00240 * 179.76952 * 22 21 20 40 40 H 1.07996 * 119.99980 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00058 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9957 -0.8283 5 6 3.5751 1.4561 -0.1210 6 1 3.9612 0.4373 -0.1521 7 6 3.9957 2.2119 -1.3551 8 1 3.2489 2.6470 -2.0026 9 6 5.3341 2.3477 -1.6575 10 7 5.7011 3.0068 -2.7348 11 14 6.6258 1.5956 -0.5372 12 1 7.0154 2.5827 0.5017 13 1 6.0696 0.3833 0.1157 14 1 7.8195 1.2229 -1.3383 15 6 4.0738 2.1827 1.1492 16 6 2.8356 3.0047 1.5868 17 7 1.7000 2.0970 1.2820 18 6 0.4415 2.8468 1.1727 19 6 0.1798 3.5799 2.4632 20 6 -0.5458 2.9703 3.4695 21 6 -0.7817 3.6409 4.6551 22 6 -0.3005 4.9248 4.8305 23 6 0.4203 5.5366 3.8219 24 6 0.6606 4.8640 2.6384 25 1 -0.3633 0.6223 -0.8178 26 1 -0.3634 -1.0194 -0.1300 27 1 -0.3634 0.3971 0.9478 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 6.6427 3.1027 -2.9473 31 1 4.3521 1.4643 1.9203 32 1 4.9102 2.8409 0.9138 33 1 2.7595 3.9243 1.0065 34 1 2.8751 3.2265 2.6533 35 1 0.5158 3.5645 0.3558 36 1 -0.3775 2.1551 0.9753 37 1 -0.9256 1.9688 3.3308 38 1 -1.3452 3.1631 5.4429 39 1 -0.4879 5.4501 5.7553 40 1 0.7959 6.5398 3.9587 41 1 1.2241 5.3417 1.8505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211466790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:31 Heat of formation + Delta-G solvation = 4.856317 kcal Electronic energy + Delta-G solvation = -19779.911198 eV Core-core repulsion = 17044.330207 eV Total energy + Delta-G solvation = -2735.580991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.82216 -39.48101 -35.35180 -34.22986 -33.63777 -31.72670 -31.16897 -29.17612 -27.33122 -25.44384 -23.71624 -23.18883 -22.22188 -21.53242 -20.78852 -18.59469 -17.55347 -17.04687 -16.57277 -16.33429 -16.03539 -15.64174 -15.36827 -14.82154 -14.36750 -14.17641 -14.05570 -13.87083 -13.66714 -13.49648 -13.29030 -13.05410 -12.73709 -12.53924 -12.40955 -12.08664 -11.92063 -11.81782 -11.73554 -11.54910 -11.24292 -11.13890 -10.95913 -10.73287 -9.75250 -9.67169 -9.26396 -8.31292 -6.34770 0.48164 0.56839 1.31495 1.35128 1.46208 2.32578 2.84214 3.03100 3.30796 3.81566 3.91167 3.99365 4.18227 4.20757 4.27615 4.30558 4.35192 4.45434 4.48740 4.61086 4.65217 4.68658 4.76078 4.82046 4.83538 4.99736 5.13130 5.16078 5.17536 5.21454 5.23704 5.24450 5.41867 5.46748 5.56758 5.62372 5.67223 5.69909 5.78575 5.98824 6.16842 6.24439 6.30561 6.71504 7.30370 8.85262 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.006132 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.468835 B = 4565.076473 C = 5224.935951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C 0.084 3.916 4 H 0.026 0.974 5 C 0.006 3.994 6 H 0.035 0.965 7 C -0.511 4.511 8 H 0.027 0.973 9 C 0.015 3.985 10 N -0.950 5.950 11 Si 0.941 3.059 12 H -0.265 1.265 13 H -0.243 1.243 14 H -0.294 1.294 15 C -0.133 4.133 16 C 0.060 3.940 17 N -0.496 5.496 18 C 0.079 3.921 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.131 4.131 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.265 0.735 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.021 0.979 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.641 -0.755 15.717 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.024 4.024 4 H 0.044 0.956 5 C -0.013 4.013 6 H 0.053 0.947 7 C -0.549 4.549 8 H 0.045 0.955 9 C -0.182 4.182 10 N -0.591 5.591 11 Si 0.765 3.235 12 H -0.191 1.191 13 H -0.166 1.166 14 H -0.220 1.220 15 C -0.171 4.171 16 C -0.068 4.068 17 N -0.220 5.220 18 C -0.048 4.048 19 C -0.086 4.086 20 C -0.127 4.127 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.150 4.150 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.118 0.882 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.153 0.847 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.595 -1.095 16.007 20.397 hybrid contribution 1.187 0.850 -1.205 1.893 sum -11.407 -0.245 14.801 18.689 Atomic orbital electron populations 1.21810 0.94660 1.01891 1.01610 1.21448 0.96832 0.94321 1.01400 1.22364 0.95167 0.95700 0.89193 0.95627 1.20005 0.92969 0.95833 0.92504 0.94683 1.21314 0.92115 1.33612 1.07826 0.95513 1.25845 1.00905 0.95075 0.96413 1.70060 1.17268 1.43781 1.27985 0.85904 0.78080 0.80533 0.78935 1.19073 1.16628 1.22041 1.22837 0.97264 0.98927 0.98071 1.22914 0.90305 0.93902 0.99666 1.64876 1.01409 1.26218 1.29486 1.21407 0.93949 0.95933 0.93506 1.19798 0.98486 0.94290 0.96060 1.21198 0.98163 1.00128 0.93186 1.21455 1.00052 0.95143 0.97490 1.21462 0.97798 0.95614 0.99486 1.21343 0.99229 1.00637 0.93362 1.21197 1.00204 0.95082 0.98490 0.93869 0.91520 0.91532 0.92794 0.91267 0.92599 0.91462 0.93349 0.95712 0.90021 0.96055 0.88155 0.84991 0.83639 0.83723 0.84743 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.74 71.98 0.63 -3.12 16 2 C -0.10 -3.38 5.38 30.59 0.16 -3.22 16 3 C 0.08 3.35 2.25 45.06 0.10 3.45 16 4 H 0.03 1.15 6.91 -2.39 -0.02 1.14 16 5 C 0.01 0.29 2.07 -10.66 -0.02 0.27 16 6 H 0.04 1.65 6.63 -2.39 -0.02 1.64 16 7 C -0.51 -29.35 9.07 25.60 0.23 -29.11 16 8 H 0.03 1.72 7.59 -2.91 -0.02 1.70 16 9 C 0.01 0.85 5.36 84.66 0.45 1.31 16 10 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 11 Si 0.94 44.89 24.84 68.60 1.70 46.59 16 12 H -0.27 -12.10 6.97 99.48 0.69 -11.41 16 13 H -0.24 -10.76 6.49 99.48 0.65 -10.11 16 14 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 15 C -0.13 -5.64 5.14 31.80 0.16 -5.48 16 16 C 0.06 2.27 5.07 86.65 0.44 2.71 16 17 N -0.50 -17.44 4.86 -862.61 -4.19 -21.63 16 18 C 0.08 2.46 4.66 85.56 0.40 2.86 16 19 C -0.09 -2.37 4.78 -19.87 -0.09 -2.46 16 20 C -0.11 -2.50 9.70 22.27 0.22 -2.28 16 21 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 22 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 23 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 24 C -0.13 -3.56 8.45 22.27 0.19 -3.38 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.07 1.62 6.25 -2.39 -0.01 1.61 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 31 H 0.07 2.58 8.14 -2.38 -0.02 2.57 16 32 H 0.05 2.22 5.43 -2.39 -0.01 2.21 16 33 H 0.02 1.02 7.48 -2.39 -0.02 1.00 16 34 H 0.08 2.81 7.70 -2.39 -0.02 2.79 16 35 H 0.02 0.74 7.92 -2.39 -0.02 0.72 16 36 H 0.10 2.75 5.30 -2.39 -0.01 2.73 16 37 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.11 3.08 7.56 -2.91 -0.02 3.05 16 Total: -1.00 -65.53 315.07 2.27 -63.26 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.91 Total: 16.85 kcal Atomic # 6 Polarization: -48.94 SS G_CDS: 3.54 Total: -45.39 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.89 Total: -81.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.70 Total: 46.59 kcal Total: -65.53 2.27 -63.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.114 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds