Wall clock time and date at job start Mon Mar 30 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.06949 * 2 1 4 4 C 1.53995 * 109.91712 * 238.78892 * 2 1 3 5 5 H 1.09004 * 110.30564 * 120.51361 * 4 2 1 6 6 C 1.50695 * 110.30967 * 358.44199 * 4 2 1 7 7 H 1.07995 * 120.00168 * 359.97438 * 6 4 2 8 8 C 1.37875 * 119.99817 * 179.97438 * 6 4 2 9 9 N 1.31517 * 120.00428 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 120.00052 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46740 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47085 * 120.00351 * 10 8 6 13 13 H 1.48504 * 109.47044 * 240.00328 * 10 8 6 14 14 C 1.54599 * 105.13968 * 239.42651 * 4 2 1 15 15 C 1.54938 * 102.92332 * 338.04284 * 14 4 2 16 16 N 1.47912 * 109.91336 * 121.20477 * 2 1 3 17 17 C 1.46901 * 110.99681 * 265.19728 * 16 2 1 18 18 C 1.50701 * 109.46921 * 169.99814 * 17 16 2 19 19 C 1.38233 * 120.00099 * 269.72682 * 18 17 16 20 20 C 1.38236 * 119.99664 * 179.74641 * 19 18 17 21 21 C 1.38232 * 120.00296 * 0.54723 * 20 19 18 22 22 C 1.38238 * 119.99892 * 359.70748 * 21 20 19 23 23 C 1.38238 * 120.00072 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47259 * 300.25118 * 1 2 3 25 25 H 1.09007 * 109.46575 * 60.24702 * 1 2 3 26 26 H 1.08999 * 109.47421 * 180.24427 * 1 2 3 27 27 H 1.09006 * 109.47306 * 179.74474 * 3 2 1 28 28 H 1.08995 * 109.47193 * 299.74885 * 3 2 1 29 29 H 1.09001 * 109.47417 * 59.74536 * 3 2 1 30 30 H 0.96998 * 120.00292 * 179.97438 * 9 8 6 31 31 H 1.09001 * 110.72328 * 96.40681 * 14 4 2 32 32 H 1.09004 * 110.72447 * 219.68635 * 14 4 2 33 33 H 1.08999 * 110.66992 * 278.98186 * 15 14 4 34 34 H 1.08996 * 110.66686 * 155.84994 * 15 14 4 35 35 H 1.09002 * 109.47401 * 49.99842 * 17 16 2 36 36 H 1.09001 * 109.46874 * 289.99855 * 17 16 2 37 37 H 1.08003 * 119.99927 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.99448 * 180.27540 * 20 19 18 39 39 H 1.07994 * 120.00159 * 179.72613 * 21 20 19 40 40 H 1.08002 * 119.99952 * 180.02562 * 22 21 20 41 41 H 1.07991 * 120.00062 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 6 2.0546 -0.7503 -1.2383 5 1 2.6715 -0.0897 -1.8476 6 6 0.9045 -1.2873 -2.0506 7 1 -0.1115 -1.1177 -1.7261 8 6 1.1494 -1.9954 -3.2080 9 7 2.3867 -2.2025 -3.6029 10 14 -0.2762 -2.6606 -4.2154 11 1 -1.5579 -2.2939 -3.5613 12 1 -0.2327 -2.0770 -5.5802 13 1 -0.1711 -4.1391 -4.3056 14 6 2.9058 -1.9119 -0.6760 15 6 3.2680 -1.4186 0.7474 16 7 2.0338 -0.7205 1.1895 17 6 2.3210 0.2123 2.2874 18 6 2.5935 -0.5656 3.5490 19 6 1.5545 -0.8812 4.4044 20 6 1.8038 -1.5993 5.5591 21 6 3.0936 -1.9919 5.8640 22 6 4.1334 -1.6717 5.0112 23 6 3.8834 -0.9584 3.8538 24 1 -0.3633 0.5177 0.8877 25 1 -0.3633 0.5100 -0.8923 26 1 -0.3634 -1.0276 0.0044 27 1 3.1450 1.4257 0.0046 28 1 1.7007 1.9533 -0.8922 29 1 1.6934 1.9561 0.8877 30 1 2.5590 -2.7009 -4.4170 31 1 2.3213 -2.8307 -0.6288 32 1 3.8052 -2.0560 -1.2747 33 1 4.1097 -0.7269 0.7123 34 1 3.4887 -2.2616 1.4021 35 1 1.4631 0.8666 2.4421 36 1 3.1950 0.8127 2.0347 37 1 0.5475 -0.5699 4.1688 38 1 0.9913 -1.8497 6.2252 39 1 3.2889 -2.5491 6.7683 40 1 5.1411 -1.9789 5.2492 41 1 4.6958 -0.7080 3.1878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211466969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:03 Heat of formation + Delta-G solvation = 31.087732 kcal Electronic energy + Delta-G solvation = -19866.779218 eV Core-core repulsion = 17132.335707 eV Total energy + Delta-G solvation = -2734.443511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59494 -38.37349 -33.68009 -32.03601 -31.35606 -30.70597 -29.46740 -26.85508 -25.82831 -24.19988 -23.22025 -22.35976 -21.11377 -19.77049 -17.91805 -16.58028 -15.99652 -15.30339 -15.20720 -14.86939 -14.51373 -14.16813 -13.51219 -13.27226 -12.88107 -12.74825 -12.46627 -12.39703 -12.20145 -11.64549 -11.55196 -11.35754 -10.92526 -10.89982 -10.88216 -10.64437 -10.49340 -10.31186 -10.08747 -9.84338 -9.56326 -9.06101 -8.76276 -8.58612 -8.53032 -8.33519 -7.65058 -5.96037 -3.96285 1.51483 1.56052 3.33018 3.41487 3.44880 3.91305 4.48865 4.77572 4.98572 5.04856 5.14042 5.25698 5.37550 5.50308 5.66350 5.67872 5.77440 5.83817 5.93294 5.97539 6.06246 6.16123 6.19177 6.24308 6.36868 6.47816 6.56412 6.60024 6.62971 6.65101 6.76476 6.83094 6.89369 7.15532 7.18615 7.30499 7.33304 7.57452 7.67760 7.88691 7.97556 8.11035 8.50598 9.04866 9.67536 11.14530 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.030161 B = 0.005206 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.134469 B = 5377.085446 C = 5462.751658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.090 3.910 3 C -0.163 4.163 4 C 0.053 3.947 5 H 0.030 0.970 6 C -0.512 4.512 7 H 0.074 0.926 8 C 0.060 3.940 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.286 1.286 14 C -0.093 4.093 15 C 0.032 3.968 16 N -0.499 5.499 17 C 0.081 3.919 18 C -0.062 4.062 19 C -0.102 4.102 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.114 4.114 24 H 0.020 0.980 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.257 0.743 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 3.629 14.611 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.222 4.222 4 C 0.034 3.966 5 H 0.049 0.951 6 C -0.550 4.550 7 H 0.092 0.908 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.715 3.285 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.212 1.212 14 C -0.131 4.131 15 C -0.096 4.096 16 N -0.222 5.222 17 C -0.047 4.047 18 C -0.063 4.063 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.132 4.132 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.295 3.191 14.651 15.050 hybrid contribution 0.047 0.082 -0.904 0.909 sum 1.342 3.273 13.747 14.195 Atomic orbital electron populations 1.21660 0.94254 1.01917 0.98456 1.21960 0.95655 0.90972 0.91222 1.22433 1.00230 0.98372 1.01131 1.19518 0.94950 0.92232 0.89889 0.95144 1.21586 0.93354 1.33545 1.06534 0.90812 1.25007 0.95246 0.96335 0.97528 1.69991 1.18452 1.41146 1.23608 0.86620 0.83075 0.78685 0.80131 1.19751 1.21298 1.21224 1.22412 0.99693 1.00297 0.90747 1.23334 0.90369 0.97095 0.98805 1.64845 1.26522 1.25021 1.05854 1.21247 1.00075 0.93659 0.89675 1.19931 0.93024 0.97776 0.95531 1.21030 0.98818 0.98207 0.93980 1.21102 0.96684 0.98942 0.97432 1.21054 0.93172 1.00923 0.99702 1.21069 0.98873 0.99194 0.94992 1.21071 0.96572 0.98701 0.96901 0.96095 0.92374 0.91463 0.93604 0.92222 0.93632 0.93335 0.92091 0.92459 0.95502 0.91942 0.90525 0.94165 0.86150 0.86477 0.86647 0.86529 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 7.34 37.16 0.27 -1.81 16 2 C 0.09 1.83 0.86 -130.53 -0.11 1.72 16 3 C -0.16 -2.89 7.09 37.16 0.26 -2.62 16 4 C 0.05 1.29 2.51 -90.41 -0.23 1.06 16 5 H 0.03 0.81 7.69 -51.93 -0.40 0.41 16 6 C -0.51 -13.58 7.51 -34.44 -0.26 -13.84 16 7 H 0.07 1.91 4.70 -52.49 -0.25 1.66 16 8 C 0.06 1.64 5.34 -17.82 -0.10 1.54 16 9 N -0.89 -25.53 12.63 55.43 0.70 -24.83 16 10 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C -0.09 -2.18 5.75 -24.87 -0.14 -2.32 16 15 C 0.03 0.62 5.66 -1.90 -0.01 0.60 16 16 N -0.50 -9.44 4.85 -216.41 -1.05 -10.49 16 17 C 0.08 1.29 3.74 -4.97 -0.02 1.27 16 18 C -0.06 -0.92 5.16 -104.62 -0.54 -1.46 16 19 C -0.10 -1.41 9.70 -39.58 -0.38 -1.79 16 20 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 21 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.11 -1.57 8.84 -39.58 -0.35 -1.92 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 1.16 7.27 -51.92 -0.38 0.79 16 26 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 27 H 0.04 0.80 7.72 -51.93 -0.40 0.40 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.70 6.42 -51.93 -0.33 0.37 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.06 1.55 7.86 -51.93 -0.41 1.14 16 32 H 0.06 1.41 8.12 -51.93 -0.42 0.99 16 33 H 0.03 0.50 7.81 -51.93 -0.41 0.09 16 34 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 35 H 0.08 1.16 7.07 -51.93 -0.37 0.79 16 36 H 0.04 0.63 6.68 -51.93 -0.35 0.28 16 37 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -28.19 318.98 -9.93 -38.12 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.57 Total: 1.48 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -2.80 Total: -25.31 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.35 Total: -35.32 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.19 -9.93 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.204 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds