Wall clock time and date at job start Mon Mar 30 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 110.06949 * 2 1 4 4 C 1.53995 * 109.91712 * 238.78892 * 2 1 3 5 5 H 1.09004 * 110.30564 * 120.51361 * 4 2 1 6 6 C 1.50695 * 110.30967 * 358.44199 * 4 2 1 7 7 H 1.07995 * 120.00168 * 359.97438 * 6 4 2 8 8 C 1.37875 * 119.99817 * 179.97438 * 6 4 2 9 9 N 1.31517 * 120.00428 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 120.00052 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46740 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47085 * 120.00351 * 10 8 6 13 13 H 1.48504 * 109.47044 * 240.00328 * 10 8 6 14 14 C 1.54599 * 105.13968 * 239.42651 * 4 2 1 15 15 C 1.54938 * 102.92332 * 338.04284 * 14 4 2 16 16 N 1.47912 * 109.91336 * 121.20477 * 2 1 3 17 17 C 1.46901 * 110.99681 * 265.19728 * 16 2 1 18 18 C 1.50701 * 109.46921 * 169.99814 * 17 16 2 19 19 C 1.38233 * 120.00099 * 269.72682 * 18 17 16 20 20 C 1.38236 * 119.99664 * 179.74641 * 19 18 17 21 21 C 1.38232 * 120.00296 * 0.54723 * 20 19 18 22 22 C 1.38238 * 119.99892 * 359.70748 * 21 20 19 23 23 C 1.38238 * 120.00072 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47259 * 300.25118 * 1 2 3 25 25 H 1.09007 * 109.46575 * 60.24702 * 1 2 3 26 26 H 1.08999 * 109.47421 * 180.24427 * 1 2 3 27 27 H 1.09006 * 109.47306 * 179.74474 * 3 2 1 28 28 H 1.08995 * 109.47193 * 299.74885 * 3 2 1 29 29 H 1.09001 * 109.47417 * 59.74536 * 3 2 1 30 30 H 0.96998 * 120.00292 * 179.97438 * 9 8 6 31 31 H 1.09001 * 110.72328 * 96.40681 * 14 4 2 32 32 H 1.09004 * 110.72447 * 219.68635 * 14 4 2 33 33 H 1.08999 * 110.66992 * 278.98186 * 15 14 4 34 34 H 1.08996 * 110.66686 * 155.84994 * 15 14 4 35 35 H 1.09002 * 109.47401 * 49.99842 * 17 16 2 36 36 H 1.09001 * 109.46874 * 289.99855 * 17 16 2 37 37 H 1.08003 * 119.99927 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.99448 * 180.27540 * 20 19 18 39 39 H 1.07994 * 120.00159 * 179.72613 * 21 20 19 40 40 H 1.08002 * 119.99952 * 180.02562 * 22 21 20 41 41 H 1.07991 * 120.00062 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 6 2.0546 -0.7503 -1.2383 5 1 2.6715 -0.0897 -1.8476 6 6 0.9045 -1.2873 -2.0506 7 1 -0.1115 -1.1177 -1.7261 8 6 1.1494 -1.9954 -3.2080 9 7 2.3867 -2.2025 -3.6029 10 14 -0.2762 -2.6606 -4.2154 11 1 -1.5579 -2.2939 -3.5613 12 1 -0.2327 -2.0770 -5.5802 13 1 -0.1711 -4.1391 -4.3056 14 6 2.9058 -1.9119 -0.6760 15 6 3.2680 -1.4186 0.7474 16 7 2.0338 -0.7205 1.1895 17 6 2.3210 0.2123 2.2874 18 6 2.5935 -0.5656 3.5490 19 6 1.5545 -0.8812 4.4044 20 6 1.8038 -1.5993 5.5591 21 6 3.0936 -1.9919 5.8640 22 6 4.1334 -1.6717 5.0112 23 6 3.8834 -0.9584 3.8538 24 1 -0.3633 0.5177 0.8877 25 1 -0.3633 0.5100 -0.8923 26 1 -0.3634 -1.0276 0.0044 27 1 3.1450 1.4257 0.0046 28 1 1.7007 1.9533 -0.8922 29 1 1.6934 1.9561 0.8877 30 1 2.5590 -2.7009 -4.4170 31 1 2.3213 -2.8307 -0.6288 32 1 3.8052 -2.0560 -1.2747 33 1 4.1097 -0.7269 0.7123 34 1 3.4887 -2.2616 1.4021 35 1 1.4631 0.8666 2.4421 36 1 3.1950 0.8127 2.0347 37 1 0.5475 -0.5699 4.1688 38 1 0.9913 -1.8497 6.2252 39 1 3.2889 -2.5491 6.7683 40 1 5.1411 -1.9789 5.2492 41 1 4.6958 -0.7080 3.1878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211466969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:03 Heat of formation + Delta-G solvation = 16.414788 kcal Electronic energy + Delta-G solvation = -19867.415485 eV Core-core repulsion = 17132.335707 eV Total energy + Delta-G solvation = -2735.079778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96827 -39.59023 -35.37303 -33.66044 -32.97034 -31.67328 -30.94939 -28.41818 -27.49739 -25.63523 -25.01717 -23.37680 -22.33425 -21.39490 -19.55167 -18.00465 -17.57189 -16.80493 -16.51796 -16.29709 -16.01680 -15.55539 -15.03156 -14.40576 -14.36522 -14.14964 -13.87211 -13.72868 -13.69484 -13.29610 -13.04724 -12.92230 -12.76483 -12.43986 -12.19279 -12.12203 -12.07773 -11.72477 -11.70455 -11.49943 -11.44115 -10.81378 -10.56397 -10.44448 -9.72206 -9.59183 -9.11750 -8.06497 -6.11799 0.52862 0.59986 1.41024 1.43863 1.54182 2.47489 2.87753 3.26273 3.37458 3.90872 4.01966 4.08979 4.24348 4.25912 4.34437 4.36658 4.41539 4.53511 4.57854 4.70412 4.73116 4.80703 4.86111 4.88502 4.95497 5.10647 5.13015 5.18835 5.24677 5.25890 5.32297 5.46608 5.63436 5.66668 5.69504 5.71630 5.75496 5.85113 5.93163 6.21009 6.29212 6.40437 6.49973 6.97340 7.55066 9.03966 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.030161 B = 0.005206 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.134469 B = 5377.085446 C = 5462.751658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.092 3.908 3 C -0.156 4.156 4 C 0.046 3.954 5 H -0.001 1.001 6 C -0.520 4.520 7 H 0.079 0.921 8 C 0.007 3.993 9 N -0.926 5.926 10 Si 0.947 3.053 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.287 1.287 14 C -0.087 4.087 15 C 0.049 3.951 16 N -0.505 5.505 17 C 0.086 3.914 18 C -0.082 4.082 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.128 4.128 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.255 0.745 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 3.999 16.896 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.003 3.997 3 C -0.214 4.214 4 C 0.027 3.973 5 H 0.017 0.983 6 C -0.558 4.558 7 H 0.097 0.903 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.773 3.227 11 H -0.187 1.187 12 H -0.211 1.211 13 H -0.214 1.214 14 C -0.126 4.126 15 C -0.079 4.079 16 N -0.229 5.229 17 C -0.041 4.041 18 C -0.083 4.083 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.594 3.572 16.950 17.332 hybrid contribution 0.289 -0.049 -1.542 1.569 sum 0.883 3.523 15.408 15.831 Atomic orbital electron populations 1.21540 0.93786 1.00796 0.99490 1.21827 0.96027 0.91968 0.89909 1.22339 1.00119 0.96756 1.02227 1.19489 0.94150 0.92332 0.91347 0.98330 1.22000 0.94293 1.32797 1.06677 0.90347 1.25763 0.97404 0.96973 0.98887 1.70122 1.20282 1.42219 1.24058 0.85667 0.80616 0.77731 0.78645 1.18700 1.21081 1.21362 1.22187 0.98142 0.99005 0.93293 1.23114 0.91118 0.97597 0.96031 1.64809 1.26087 1.26014 1.05998 1.21255 1.00637 0.93333 0.88925 1.19899 0.93860 0.99050 0.95486 1.21200 0.98811 0.98768 0.94622 1.21425 0.97799 0.98148 0.97163 1.21444 0.92761 1.00222 1.00364 1.21381 1.00293 0.98507 0.94431 1.21207 0.96328 0.99326 0.97786 0.93182 0.93110 0.93640 0.93742 0.92804 0.90761 0.93571 0.94872 0.94736 0.94440 0.91170 0.89528 0.93762 0.85796 0.84189 0.83917 0.84409 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.79 7.34 71.98 0.53 -3.26 16 2 C 0.09 3.65 0.86 3.67 0.00 3.65 16 3 C -0.16 -5.30 7.09 71.98 0.51 -4.79 16 4 C 0.05 2.29 2.51 -10.66 -0.03 2.26 16 5 H 0.00 -0.08 7.69 -2.38 -0.02 -0.10 16 6 C -0.52 -28.13 7.51 25.60 0.19 -27.93 16 7 H 0.08 4.09 4.70 -2.91 -0.01 4.08 16 8 C 0.01 0.41 5.34 84.65 0.45 0.86 16 9 N -0.93 -54.74 12.63 21.45 0.27 -54.47 16 10 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 14 C -0.09 -4.25 5.75 31.80 0.18 -4.07 16 15 C 0.05 1.91 5.66 86.65 0.49 2.40 16 16 N -0.51 -18.59 4.85 -838.60 -4.07 -22.66 16 17 C 0.09 2.54 3.74 85.56 0.32 2.86 16 18 C -0.08 -2.28 5.16 -19.86 -0.10 -2.38 16 19 C -0.12 -2.93 9.70 22.27 0.22 -2.71 16 20 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 21 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 22 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 23 C -0.13 -3.29 8.84 22.27 0.20 -3.09 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.99 7.27 -2.38 -0.02 1.97 16 26 H 0.04 1.92 6.95 -2.39 -0.02 1.90 16 27 H 0.04 1.50 7.72 -2.38 -0.02 1.48 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 2.09 6.42 -2.39 -0.02 2.07 16 30 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.03 1.75 7.86 -2.39 -0.02 1.73 16 32 H 0.03 1.78 8.12 -2.38 -0.02 1.76 16 33 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 34 H 0.07 2.62 7.85 -2.39 -0.02 2.60 16 35 H 0.09 2.37 7.07 -2.39 -0.02 2.36 16 36 H 0.04 1.28 6.68 -2.39 -0.02 1.26 16 37 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.12 2.90 8.06 -2.92 -0.02 2.87 16 Total: -1.00 -61.53 318.98 2.85 -58.68 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.99 Total: 15.84 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 3.63 Total: -43.69 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.80 Total: -77.13 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.53 2.85 -58.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211466969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.096 kcal (2) G-P(sol) polarization free energy of solvation -61.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds