Wall clock time and date at job start Mon Mar 30 2020 07:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46612 * 2 1 4 4 H 1.09000 * 109.46846 * 54.02735 * 3 2 1 5 5 C 1.50704 * 109.46863 * 174.02241 * 3 2 1 6 6 H 1.07997 * 119.99249 * 115.06805 * 5 3 2 7 7 C 1.37872 * 119.99963 * 295.06744 * 5 3 2 8 8 N 1.31516 * 120.00174 * 353.75814 * 7 5 3 9 9 Si 1.86800 * 119.99630 * 173.75811 * 7 5 3 10 10 H 1.48506 * 109.47017 * 269.99677 * 9 7 5 11 11 H 1.48500 * 109.47357 * 30.00002 * 9 7 5 12 12 H 1.48506 * 109.47042 * 150.00004 * 9 7 5 13 13 N 1.46895 * 109.47298 * 294.02644 * 3 2 1 14 14 C 1.46429 * 110.99750 * 312.64975 * 13 3 2 15 15 C 1.53384 * 108.65487 * 178.85379 * 14 13 3 16 16 H 1.09002 * 109.77227 * 51.38495 * 15 14 13 17 17 C 1.52999 * 109.77150 * 172.11756 * 15 14 13 18 18 C 1.53048 * 107.91822 * 291.72519 * 15 14 13 19 19 C 1.50797 * 109.65294 * 47.30093 * 18 15 14 20 20 C 1.38611 * 118.12337 * 164.55643 * 19 18 15 21 21 C 1.38050 * 120.49170 * 179.73041 * 20 19 18 22 22 C 1.38320 * 119.88659 * 359.97438 * 21 20 19 23 23 C 1.37805 * 119.94808 * 0.12953 * 22 21 20 24 24 C 1.38379 * 122.01380 * 344.50034 * 19 18 15 25 25 H 1.08998 * 109.47371 * 59.99884 * 1 2 3 26 26 H 1.09007 * 109.46745 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47134 * 299.99639 * 1 2 3 28 28 H 1.08997 * 109.46855 * 240.00400 * 2 1 3 29 29 H 1.08998 * 109.47371 * 120.00116 * 2 1 3 30 30 H 0.96998 * 119.99909 * 355.23313 * 8 7 5 31 31 H 1.08995 * 109.60704 * 298.60768 * 14 13 3 32 32 H 1.09003 * 109.60489 * 58.94439 * 14 13 3 33 33 H 1.09003 * 109.46968 * 60.00695 * 17 15 14 34 34 H 1.09003 * 109.47134 * 180.02562 * 17 15 14 35 35 H 1.08995 * 109.47241 * 299.99965 * 17 15 14 36 36 H 1.09005 * 109.43769 * 167.35401 * 18 15 14 37 37 H 1.08997 * 109.44154 * 287.24173 * 18 15 14 38 38 H 1.07999 * 119.75893 * 359.75069 * 20 19 18 39 39 H 1.07995 * 120.06167 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02306 * 180.10745 * 22 21 20 41 41 H 1.08003 * 119.78240 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5918 1.9863 0.8317 5 6 3.5397 1.4452 0.1480 6 1 4.1608 1.8128 -0.6554 7 6 4.1187 0.9784 1.3089 8 7 3.3633 0.6460 2.3329 9 14 5.9760 0.8180 1.4272 10 1 6.3859 -0.5350 0.9726 11 1 6.6173 1.8447 0.5670 12 1 6.4013 1.0168 2.8361 13 7 1.6715 2.0922 -1.2649 14 6 1.9962 1.2368 -2.4082 15 6 1.5645 1.9522 -3.6945 16 1 1.9726 2.9628 -3.7090 17 6 2.0662 1.1742 -4.9126 18 6 0.0352 2.0097 -3.7107 19 6 -0.4687 2.4844 -2.3710 20 6 -1.7839 2.9127 -2.2821 21 6 -2.2977 3.3521 -1.0784 22 6 -1.4965 3.3655 0.0491 23 6 -0.1873 2.9432 -0.0321 24 6 0.3387 2.5004 -1.2473 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.4054 0.7940 2.2972 31 1 3.0703 1.0535 -2.4344 32 1 1.4654 0.2890 -2.3182 33 1 1.6449 0.1689 -4.9004 34 1 1.7573 1.6868 -5.8236 35 1 3.1540 1.1128 -4.8818 36 1 -0.2936 2.7003 -4.4874 37 1 -0.3631 1.0163 -3.9170 38 1 -2.4117 2.9025 -3.1608 39 1 -3.3233 3.6847 -1.0170 40 1 -1.8967 3.7071 0.9923 41 1 0.4360 2.9552 0.8498 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217946029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:33 Heat of formation + Delta-G solvation = 23.139228 kcal Electronic energy + Delta-G solvation = -20592.289940 eV Core-core repulsion = 17857.501756 eV Total energy + Delta-G solvation = -2734.788184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48036 -36.82072 -35.61106 -32.82891 -31.02300 -30.85916 -29.37881 -26.75412 -26.29148 -24.31763 -23.05387 -21.84424 -21.48969 -19.62801 -18.81842 -16.90981 -16.67120 -15.43519 -15.22706 -14.63805 -14.01425 -13.77044 -13.68866 -13.36247 -13.25967 -12.87351 -12.59269 -12.27687 -12.02435 -11.89233 -11.73576 -11.62420 -11.28589 -11.01213 -10.83479 -10.74649 -10.51497 -10.45739 -10.18088 -10.11909 -10.02943 -9.68556 -9.21480 -8.45384 -8.36845 -8.23099 -6.78651 -6.41287 -4.13083 1.85611 1.98683 3.40544 3.43962 3.59749 4.19308 4.45341 4.67653 4.95789 5.12472 5.20492 5.26882 5.37294 5.47689 5.60141 5.72903 5.80195 5.83584 5.92087 5.96280 5.99419 6.02905 6.06084 6.11881 6.21091 6.28398 6.39216 6.41964 6.47185 6.59406 6.66577 6.74005 6.79308 6.88628 6.93174 7.02930 7.14887 7.33454 7.40805 7.87363 7.95025 8.30091 8.50436 8.78774 9.55377 10.95057 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.007970 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.050172 B = 3512.349996 C = 4355.693155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.154 4.154 3 C 0.201 3.799 4 H 0.049 0.951 5 C -0.587 4.587 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.478 5.478 14 C 0.069 3.931 15 C -0.100 4.100 16 H 0.078 0.922 17 C -0.141 4.141 18 C -0.064 4.064 19 C -0.153 4.153 20 C -0.092 4.092 21 C -0.176 4.176 22 C -0.095 4.095 23 C -0.167 4.167 24 C 0.166 3.834 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.270 0.730 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 1.536 -9.817 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.097 3.903 4 H 0.067 0.933 5 C -0.625 4.625 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.546 5.546 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.186 5.186 14 C -0.058 4.058 15 C -0.118 4.118 16 H 0.096 0.904 17 C -0.199 4.199 18 C -0.101 4.101 19 C -0.157 4.157 20 C -0.111 4.111 21 C -0.195 4.195 22 C -0.114 4.114 23 C -0.188 4.188 24 C 0.064 3.936 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.785 1.382 -8.858 10.670 hybrid contribution -1.711 -0.008 -0.860 1.915 sum -7.495 1.375 -9.718 12.349 Atomic orbital electron populations 1.22130 0.98217 0.99839 1.01364 1.22309 0.93008 1.01517 1.02470 1.19812 0.97118 0.88540 0.84789 0.93315 1.21909 0.90147 1.46320 1.04125 0.92445 1.25743 1.06852 0.93606 0.91990 1.70773 1.07618 1.44661 1.31548 0.83532 0.74314 0.76423 0.75944 1.21478 1.21432 1.21077 1.58168 1.13590 1.40540 1.06344 1.22148 1.02085 0.93780 0.87758 1.21348 0.94996 1.00553 0.94939 0.90382 1.21740 1.01288 0.99875 0.96972 1.20478 0.95268 1.00505 0.93894 1.19411 0.94004 1.07301 0.94994 1.20763 0.94320 0.98723 0.97307 1.20733 0.99490 1.05967 0.93328 1.20842 0.93863 0.98785 0.97937 1.21332 0.96007 1.04081 0.97379 1.18829 0.87729 0.94422 0.92657 0.92844 0.94613 0.93253 0.93002 0.90536 0.91834 0.89484 0.93533 0.92814 0.92820 0.92356 0.91541 0.91630 0.87163 0.87208 0.86890 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 8.38 37.16 0.31 -2.83 16 2 C -0.15 -3.47 4.59 -26.73 -0.12 -3.60 16 3 C 0.20 4.82 1.40 -68.86 -0.10 4.72 16 4 H 0.05 1.26 4.51 -51.93 -0.23 1.03 16 5 C -0.59 -15.70 8.09 -34.44 -0.28 -15.98 16 6 H 0.06 1.57 7.39 -52.49 -0.39 1.18 16 7 C 0.02 0.61 5.20 -17.82 -0.09 0.52 16 8 N -0.91 -26.10 12.80 55.43 0.71 -25.39 16 9 Si 1.07 24.54 29.91 -169.99 -5.08 19.46 16 10 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.48 -10.22 4.41 -165.05 -0.73 -10.95 16 14 C 0.07 1.30 3.88 -3.88 -0.02 1.28 16 15 C -0.10 -1.54 2.94 -90.40 -0.27 -1.80 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.14 -1.75 9.20 37.16 0.34 -1.41 16 18 C -0.06 -0.94 5.15 -27.81 -0.14 -1.09 16 19 C -0.15 -2.62 5.05 -104.39 -0.53 -3.15 16 20 C -0.09 -1.42 9.63 -39.51 -0.38 -1.80 16 21 C -0.18 -2.66 10.05 -39.62 -0.40 -3.06 16 22 C -0.10 -1.58 10.04 -39.71 -0.40 -1.98 16 23 C -0.17 -3.24 7.19 -39.23 -0.28 -3.52 16 24 C 0.17 3.25 3.43 -83.85 -0.29 2.97 16 25 H 0.05 1.04 4.77 -51.93 -0.25 0.80 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.98 7.44 -51.93 -0.39 0.60 16 28 H 0.05 1.15 5.92 -51.93 -0.31 0.84 16 29 H 0.08 1.92 6.25 -51.93 -0.32 1.60 16 30 H 0.27 7.70 6.18 -40.82 -0.25 7.45 16 31 H 0.09 1.75 7.26 -51.93 -0.38 1.37 16 32 H 0.05 0.89 5.66 -51.93 -0.29 0.60 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.13 2.72 5.68 -52.48 -0.30 2.42 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -28.21 304.81 -9.27 -37.49 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.13 Total: 5.53 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: -2.64 Total: -30.72 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.02 Total: -36.34 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.21 -9.27 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217946029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.626 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds