Wall clock time and date at job start Mon Mar 30 2020 07:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46612 * 2 1 4 4 H 1.09000 * 109.46846 * 54.02735 * 3 2 1 5 5 C 1.50704 * 109.46863 * 174.02241 * 3 2 1 6 6 H 1.07997 * 119.99249 * 115.06805 * 5 3 2 7 7 C 1.37872 * 119.99963 * 295.06744 * 5 3 2 8 8 N 1.31516 * 120.00174 * 353.75814 * 7 5 3 9 9 Si 1.86800 * 119.99630 * 173.75811 * 7 5 3 10 10 H 1.48506 * 109.47017 * 269.99677 * 9 7 5 11 11 H 1.48500 * 109.47357 * 30.00002 * 9 7 5 12 12 H 1.48506 * 109.47042 * 150.00004 * 9 7 5 13 13 N 1.46895 * 109.47298 * 294.02644 * 3 2 1 14 14 C 1.46429 * 110.99750 * 312.64975 * 13 3 2 15 15 C 1.53384 * 108.65487 * 178.85379 * 14 13 3 16 16 H 1.09002 * 109.77227 * 51.38495 * 15 14 13 17 17 C 1.52999 * 109.77150 * 172.11756 * 15 14 13 18 18 C 1.53048 * 107.91822 * 291.72519 * 15 14 13 19 19 C 1.50797 * 109.65294 * 47.30093 * 18 15 14 20 20 C 1.38611 * 118.12337 * 164.55643 * 19 18 15 21 21 C 1.38050 * 120.49170 * 179.73041 * 20 19 18 22 22 C 1.38320 * 119.88659 * 359.97438 * 21 20 19 23 23 C 1.37805 * 119.94808 * 0.12953 * 22 21 20 24 24 C 1.38379 * 122.01380 * 344.50034 * 19 18 15 25 25 H 1.08998 * 109.47371 * 59.99884 * 1 2 3 26 26 H 1.09007 * 109.46745 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47134 * 299.99639 * 1 2 3 28 28 H 1.08997 * 109.46855 * 240.00400 * 2 1 3 29 29 H 1.08998 * 109.47371 * 120.00116 * 2 1 3 30 30 H 0.96998 * 119.99909 * 355.23313 * 8 7 5 31 31 H 1.08995 * 109.60704 * 298.60768 * 14 13 3 32 32 H 1.09003 * 109.60489 * 58.94439 * 14 13 3 33 33 H 1.09003 * 109.46968 * 60.00695 * 17 15 14 34 34 H 1.09003 * 109.47134 * 180.02562 * 17 15 14 35 35 H 1.08995 * 109.47241 * 299.99965 * 17 15 14 36 36 H 1.09005 * 109.43769 * 167.35401 * 18 15 14 37 37 H 1.08997 * 109.44154 * 287.24173 * 18 15 14 38 38 H 1.07999 * 119.75893 * 359.75069 * 20 19 18 39 39 H 1.07995 * 120.06167 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02306 * 180.10745 * 22 21 20 41 41 H 1.08003 * 119.78240 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5918 1.9863 0.8317 5 6 3.5397 1.4452 0.1480 6 1 4.1608 1.8128 -0.6554 7 6 4.1187 0.9784 1.3089 8 7 3.3633 0.6460 2.3329 9 14 5.9760 0.8180 1.4272 10 1 6.3859 -0.5350 0.9726 11 1 6.6173 1.8447 0.5670 12 1 6.4013 1.0168 2.8361 13 7 1.6715 2.0922 -1.2649 14 6 1.9962 1.2368 -2.4082 15 6 1.5645 1.9522 -3.6945 16 1 1.9726 2.9628 -3.7090 17 6 2.0662 1.1742 -4.9126 18 6 0.0352 2.0097 -3.7107 19 6 -0.4687 2.4844 -2.3710 20 6 -1.7839 2.9127 -2.2821 21 6 -2.2977 3.3521 -1.0784 22 6 -1.4965 3.3655 0.0491 23 6 -0.1873 2.9432 -0.0321 24 6 0.3387 2.5004 -1.2473 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.4054 0.7940 2.2972 31 1 3.0703 1.0535 -2.4344 32 1 1.4654 0.2890 -2.3182 33 1 1.6449 0.1689 -4.9004 34 1 1.7573 1.6868 -5.8236 35 1 3.1540 1.1128 -4.8818 36 1 -0.2936 2.7003 -4.4874 37 1 -0.3631 1.0163 -3.9170 38 1 -2.4117 2.9025 -3.1608 39 1 -3.3233 3.6847 -1.0170 40 1 -1.8967 3.7071 0.9923 41 1 0.4360 2.9552 0.8498 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217946029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:32 Heat of formation + Delta-G solvation = 8.428879 kcal Electronic energy + Delta-G solvation = -20592.927829 eV Core-core repulsion = 17857.501756 eV Total energy + Delta-G solvation = -2735.426073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93529 -38.29019 -37.02337 -34.67868 -32.70242 -32.16680 -30.78976 -28.53588 -27.46298 -25.95200 -24.82985 -23.31493 -22.77018 -21.33078 -20.15669 -18.86729 -18.14309 -16.77894 -16.67368 -16.13653 -15.70183 -15.43608 -15.21024 -14.70089 -14.56238 -14.29566 -14.07227 -13.74640 -13.65891 -13.46940 -12.97545 -12.93755 -12.79831 -12.61516 -12.50588 -12.25684 -12.15639 -11.97574 -11.90631 -11.62944 -11.40375 -11.17457 -10.89134 -10.43255 -10.27991 -9.54493 -8.61068 -8.28480 -6.31963 0.54430 0.64639 1.51432 1.59307 1.77139 2.53846 2.84269 3.13379 3.22903 3.73756 3.89266 3.95287 4.07485 4.18346 4.26227 4.29871 4.39776 4.45980 4.49014 4.60526 4.66135 4.74139 4.77464 4.80098 4.86575 4.90888 5.00229 5.03216 5.08230 5.16601 5.20614 5.25230 5.27490 5.42232 5.48598 5.56031 5.65841 5.74787 5.88192 6.08088 6.16400 6.46538 6.58187 6.78607 7.43944 8.75807 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.007970 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.050172 B = 3512.349996 C = 4355.693155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.207 3.793 4 H 0.024 0.976 5 C -0.596 4.596 6 H 0.044 0.956 7 C -0.024 4.024 8 N -0.932 5.932 9 Si 1.113 2.887 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.285 1.285 13 N -0.495 5.495 14 C 0.070 3.930 15 C -0.093 4.093 16 H 0.063 0.937 17 C -0.134 4.134 18 C -0.062 4.062 19 C -0.157 4.157 20 C -0.089 4.089 21 C -0.164 4.164 22 C -0.100 4.100 23 C -0.191 4.191 24 C 0.136 3.864 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.259 0.741 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 1.707 -12.387 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.102 3.898 4 H 0.041 0.959 5 C -0.634 4.634 6 H 0.063 0.937 7 C -0.223 4.223 8 N -0.569 5.569 9 Si 0.936 3.064 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.211 1.211 13 N -0.206 5.206 14 C -0.056 4.056 15 C -0.111 4.111 16 H 0.081 0.919 17 C -0.192 4.192 18 C -0.098 4.098 19 C -0.161 4.161 20 C -0.107 4.107 21 C -0.183 4.183 22 C -0.119 4.119 23 C -0.212 4.212 24 C 0.036 3.964 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.148 0.852 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.718 1.564 -11.452 13.899 hybrid contribution -1.231 0.017 -0.073 1.233 sum -8.949 1.580 -11.525 14.677 Atomic orbital electron populations 1.21964 0.95833 1.00894 1.01307 1.22090 0.95054 1.00227 1.00744 1.19514 0.95303 0.89133 0.85889 0.95889 1.22201 0.91967 1.45642 1.03577 0.93725 1.27046 1.10413 0.93105 0.91745 1.70872 1.07177 1.46494 1.32387 0.82966 0.69960 0.77408 0.76065 1.19893 1.20145 1.21065 1.58119 1.15696 1.41163 1.05586 1.22149 1.00541 0.93893 0.89013 1.21306 0.96103 0.99632 0.94103 0.91864 1.21702 1.01042 1.00112 0.96348 1.20556 0.94078 1.01989 0.93215 1.19796 0.94558 1.06585 0.95117 1.21214 0.93735 0.97055 0.98742 1.21176 1.00755 1.03974 0.92434 1.21093 0.92777 0.98313 0.99713 1.21221 0.97197 1.06281 0.96533 1.18955 0.87404 0.96132 0.93940 0.92084 0.92787 0.94098 0.93009 0.93675 0.93064 0.91941 0.94041 0.92005 0.90267 0.92813 0.88663 0.90114 0.83350 0.83607 0.85176 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 8.38 71.98 0.60 -5.14 16 2 C -0.14 -6.70 4.59 30.60 0.14 -6.55 16 3 C 0.21 10.48 1.40 44.17 0.06 10.54 16 4 H 0.02 1.31 4.51 -2.39 -0.01 1.29 16 5 C -0.60 -33.52 8.09 25.60 0.21 -33.31 16 6 H 0.04 2.56 7.39 -2.91 -0.02 2.54 16 7 C -0.02 -1.38 5.20 84.65 0.44 -0.94 16 8 N -0.93 -55.97 12.80 21.45 0.27 -55.70 16 9 Si 1.11 50.64 29.91 68.60 2.05 52.69 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.50 -22.00 4.41 -676.10 -2.98 -24.99 16 14 C 0.07 2.69 3.88 86.52 0.34 3.03 16 15 C -0.09 -2.72 2.94 -10.65 -0.03 -2.75 16 16 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 17 C -0.13 -3.00 9.20 71.98 0.66 -2.33 16 18 C -0.06 -1.59 5.15 29.89 0.15 -1.43 16 19 C -0.16 -4.99 5.05 -19.71 -0.10 -5.09 16 20 C -0.09 -2.35 9.63 22.31 0.21 -2.13 16 21 C -0.16 -4.35 10.05 22.24 0.22 -4.13 16 22 C -0.10 -3.20 10.04 22.19 0.22 -2.98 16 23 C -0.19 -7.63 7.19 22.50 0.16 -7.46 16 24 C 0.14 5.38 3.43 38.30 0.13 5.51 16 25 H 0.06 2.36 4.77 -2.39 -0.01 2.35 16 26 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.04 1.68 7.44 -2.38 -0.02 1.66 16 28 H 0.05 2.39 5.92 -2.39 -0.01 2.37 16 29 H 0.04 2.39 6.25 -2.39 -0.01 2.37 16 30 H 0.26 15.74 6.18 -92.71 -0.57 15.17 16 31 H 0.06 2.63 7.26 -2.39 -0.02 2.61 16 32 H 0.04 1.60 5.66 -2.39 -0.01 1.58 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.08 1.88 8.08 -2.39 -0.02 1.87 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.10 4.36 5.68 -2.91 -0.02 4.34 16 Total: -1.00 -64.47 304.81 3.98 -60.49 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 1.20 Total: 22.67 kcal Atomic # 6 Polarization: -58.60 SS G_CDS: 3.43 Total: -55.18 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.71 Total: -80.68 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -64.47 3.98 -60.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217946029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.922 kcal (2) G-P(sol) polarization free energy of solvation -64.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds