Wall clock time and date at job start Mon Mar 30 2020 07:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 N 1.46901 * 109.47400 * 119.99630 * 2 1 3 5 5 C 1.46899 * 111.00216 * 173.89269 * 4 2 1 6 6 H 1.08997 * 109.46961 * 27.78940 * 5 4 2 7 7 C 1.50697 * 109.47698 * 267.78290 * 5 4 2 8 8 H 1.08004 * 119.99549 * 120.58991 * 7 5 4 9 9 C 1.37876 * 120.00078 * 300.87350 * 7 5 4 10 10 N 1.31512 * 119.99705 * 8.05777 * 9 7 5 11 11 Si 1.86795 * 119.99983 * 188.05917 * 9 7 5 12 12 H 1.48496 * 109.47607 * 89.99797 * 11 9 7 13 13 H 1.48506 * 109.47216 * 209.99864 * 11 9 7 14 14 H 1.48505 * 109.47141 * 329.99429 * 11 9 7 15 15 C 1.50701 * 109.46720 * 147.78217 * 5 4 2 16 16 C 1.38230 * 120.00237 * 29.70445 * 15 5 4 17 17 C 1.38237 * 119.99912 * 179.78179 * 16 15 5 18 18 C 1.38232 * 119.99997 * 0.44538 * 17 16 15 19 19 C 1.38231 * 120.00303 * 359.81117 * 18 17 16 20 20 C 1.38237 * 119.99887 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.47444 * 240.00011 * 2 1 3 22 22 C 1.52996 * 117.49856 * 123.61618 * 21 2 1 23 23 C 1.52996 * 60.00269 * 252.51603 * 22 21 2 24 24 H 1.09002 * 109.47362 * 303.44134 * 1 2 3 25 25 H 1.08998 * 109.47158 * 63.44574 * 1 2 3 26 26 H 1.09003 * 109.46929 * 183.44990 * 1 2 3 27 27 H 1.09006 * 109.47233 * 191.30575 * 3 2 1 28 28 H 1.08999 * 109.46996 * 311.30735 * 3 2 1 29 29 H 1.09000 * 109.46998 * 71.30992 * 3 2 1 30 30 H 1.00900 * 110.99799 * 49.94529 * 4 2 1 31 31 H 0.97001 * 119.99655 * 180.02562 * 10 9 7 32 32 H 1.07996 * 120.00009 * 359.97438 * 16 15 5 33 33 H 1.08005 * 119.99951 * 180.27252 * 17 16 15 34 34 H 1.08005 * 120.00031 * 179.82845 * 18 17 16 35 35 H 1.07997 * 120.00590 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.00168 * 180.02562 * 20 19 18 37 37 H 1.08992 * 115.55154 * 269.33186 * 21 2 1 38 38 H 1.08999 * 117.49971 * 0.02562 * 22 21 2 39 39 H 1.09001 * 117.49644 * 145.02027 * 22 21 2 40 40 H 1.09004 * 117.49466 * 252.51424 * 23 22 21 41 41 H 1.08991 * 117.49743 * 107.49235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4808 -0.8397 1.1627 6 1 3.9127 -0.0310 0.5732 7 6 3.8368 -2.1634 0.5366 8 1 4.4436 -2.1925 -0.3564 9 6 3.3831 -3.3369 1.1004 10 7 2.5134 -3.2995 2.0862 11 14 4.0037 -4.9798 0.4641 12 1 5.2184 -5.3769 1.2205 13 1 2.9497 -6.0105 0.6440 14 1 4.3363 -4.8585 -0.9781 15 6 4.0266 -0.7849 2.5663 16 6 3.2550 -1.2244 3.6256 17 6 3.7574 -1.1784 4.9126 18 6 5.0279 -0.6842 5.1413 19 6 5.7976 -0.2397 4.0827 20 6 5.2969 -0.2899 2.7952 21 6 2.0400 -0.7212 -1.2492 22 6 2.9839 0.0497 -2.1741 23 6 1.5415 -0.2212 -2.6066 24 1 -0.3634 0.5663 0.8575 25 1 -0.3633 0.4594 -0.9192 26 1 -0.3633 -1.0258 0.0618 27 1 3.1112 1.4492 -0.2015 28 1 1.5214 2.0112 -0.7720 29 1 1.8505 1.8948 0.9735 30 1 1.5687 -1.5883 1.3092 31 1 2.1945 -4.1252 2.4831 32 1 2.2608 -1.6067 3.4474 33 1 3.1561 -1.5259 5.7398 34 1 5.4194 -0.6456 6.1472 35 1 6.7904 0.1460 4.2613 36 1 5.8984 0.0570 1.9679 37 1 2.2076 -1.7925 -1.1381 38 1 3.2418 1.0706 -1.8925 39 1 3.7729 -0.5143 -2.6716 40 1 1.3816 -0.9636 -3.3886 41 1 0.8504 0.6215 -2.6096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232531279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:59 Heat of formation + Delta-G solvation = 54.038699 kcal Electronic energy + Delta-G solvation = -20437.515038 eV Core-core repulsion = 17704.066756 eV Total energy + Delta-G solvation = -2733.448283 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.87464 -37.74830 -34.61951 -32.61833 -30.79144 -29.68456 -28.45919 -26.94158 -25.86592 -22.99389 -22.02601 -21.63128 -21.19250 -19.81454 -17.63596 -16.54460 -15.86958 -15.65367 -14.80047 -14.27044 -14.07250 -13.79807 -13.49325 -12.99431 -12.48405 -12.25145 -11.98261 -11.90454 -11.74480 -11.54481 -11.39930 -11.07359 -10.93673 -10.85383 -10.65533 -10.40017 -10.31185 -10.16046 -9.91446 -9.75947 -9.50810 -9.42020 -9.08347 -8.60265 -7.75125 -7.36354 -6.97891 -6.05170 -4.23108 2.56978 2.68505 3.22235 3.29825 3.32558 4.31539 4.51038 5.02843 5.14175 5.37740 5.46608 5.60382 5.74225 5.84762 5.86922 5.98603 5.99440 6.06184 6.13760 6.17790 6.24795 6.37981 6.46157 6.47703 6.57367 6.59833 6.67926 6.83538 6.86261 6.95674 6.97281 7.04636 7.20707 7.26682 7.38732 7.59770 7.69877 7.86526 8.06864 8.12300 8.31524 8.49992 8.91222 9.18810 9.45896 10.83159 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.009720 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.617069 B = 2879.848303 C = 3813.893188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.143 3.857 3 C -0.137 4.137 4 N -0.675 5.675 5 C 0.240 3.760 6 H 0.040 0.960 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.073 3.927 10 N -0.874 5.874 11 Si 0.885 3.115 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.018 4.018 16 C -0.055 4.055 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.184 4.184 23 C -0.199 4.199 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.367 0.633 31 H 0.266 0.734 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 5.389 -1.903 5.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.051 3.949 3 C -0.195 4.195 4 N -0.311 5.311 5 C 0.131 3.869 6 H 0.058 0.942 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.131 4.131 10 N -0.512 5.512 11 Si 0.713 3.287 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.019 4.019 16 C -0.074 4.074 17 C -0.167 4.167 18 C -0.173 4.173 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.220 4.220 23 C -0.237 4.237 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.193 0.807 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.680 5.809 -1.383 6.204 hybrid contribution 0.787 -1.915 -0.960 2.283 sum -0.893 3.894 -2.344 4.632 Atomic orbital electron populations 1.21782 0.95424 1.01428 1.00418 1.20276 0.93111 0.93100 0.88439 1.21995 1.00695 0.96108 1.00689 1.61048 1.07616 1.29165 1.33253 1.18071 0.85756 0.94609 0.88423 0.94228 1.21597 1.32930 0.91136 1.11029 0.92487 1.24939 0.94625 0.98908 0.94583 1.69577 1.29490 1.27672 1.24508 0.86702 0.78875 0.83914 0.79195 1.20631 1.21245 1.20096 1.20267 0.92416 0.92215 0.96979 1.21403 1.01765 0.94074 0.90131 1.21109 0.95855 1.02225 0.97527 1.20748 0.95700 1.03338 0.97468 1.20739 0.98815 1.03291 0.93419 1.20861 0.96549 1.02468 0.95651 1.23452 1.01088 1.01504 0.90271 1.22957 0.92549 1.01454 1.05090 1.22905 0.97473 1.03263 1.00061 0.92743 0.93405 0.93035 0.92514 0.93986 0.92516 0.80675 0.92373 0.83600 0.88245 0.88464 0.88275 0.88010 0.86105 0.89011 0.90105 0.90261 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.49 37.16 0.32 -1.88 16 2 C 0.14 2.63 0.82 -131.60 -0.11 2.53 16 3 C -0.14 -2.33 6.95 37.16 0.26 -2.07 16 4 N -0.67 -14.45 4.90 -95.46 -0.47 -14.92 16 5 C 0.24 5.47 1.92 -70.02 -0.13 5.34 16 6 H 0.04 0.90 5.80 -51.93 -0.30 0.60 16 7 C -0.53 -13.00 6.29 -34.44 -0.22 -13.22 16 8 H 0.06 1.45 7.83 -52.48 -0.41 1.04 16 9 C 0.07 1.80 5.03 -17.82 -0.09 1.71 16 10 N -0.87 -21.69 8.03 55.43 0.45 -21.25 16 11 Si 0.89 20.22 29.55 -169.99 -5.02 15.20 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 C -0.02 -0.41 4.75 -104.62 -0.50 -0.90 16 16 C -0.06 -1.27 7.73 -39.58 -0.31 -1.57 16 17 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 18 C -0.15 -3.01 10.05 -39.59 -0.40 -3.41 16 19 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 20 C -0.14 -2.95 9.70 -39.58 -0.38 -3.33 16 21 C -0.14 -2.66 3.80 -90.62 -0.34 -3.01 16 22 C -0.18 -3.09 9.50 -26.74 -0.25 -3.35 16 23 C -0.20 -3.13 9.53 -26.73 -0.25 -3.39 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.70 6.86 -51.93 -0.36 0.34 16 26 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 27 H 0.06 0.99 4.94 -51.93 -0.26 0.74 16 28 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.37 8.56 5.73 -39.29 -0.22 8.34 16 31 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.15 3.52 5.72 -52.49 -0.30 3.22 16 33 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.12 2.64 6.48 -51.93 -0.34 2.30 16 38 H 0.09 1.47 5.76 -51.93 -0.30 1.17 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.21 7.26 -51.93 -0.38 0.83 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -24.46 314.15 -9.74 -34.20 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -6.22 Total: 15.34 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -3.21 Total: -33.30 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.02 Total: -36.17 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -24.46 -9.74 -34.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232531279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.236 kcal (2) G-P(sol) polarization free energy of solvation -24.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds