Wall clock time and date at job start Mon Mar 30 2020 07:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 N 1.46901 * 109.47400 * 119.99630 * 2 1 3 5 5 C 1.46899 * 111.00216 * 173.89269 * 4 2 1 6 6 H 1.08997 * 109.46961 * 27.78940 * 5 4 2 7 7 C 1.50697 * 109.47698 * 267.78290 * 5 4 2 8 8 H 1.08004 * 119.99549 * 120.58991 * 7 5 4 9 9 C 1.37876 * 120.00078 * 300.87350 * 7 5 4 10 10 N 1.31512 * 119.99705 * 8.05777 * 9 7 5 11 11 Si 1.86795 * 119.99983 * 188.05917 * 9 7 5 12 12 H 1.48496 * 109.47607 * 89.99797 * 11 9 7 13 13 H 1.48506 * 109.47216 * 209.99864 * 11 9 7 14 14 H 1.48505 * 109.47141 * 329.99429 * 11 9 7 15 15 C 1.50701 * 109.46720 * 147.78217 * 5 4 2 16 16 C 1.38230 * 120.00237 * 29.70445 * 15 5 4 17 17 C 1.38237 * 119.99912 * 179.78179 * 16 15 5 18 18 C 1.38232 * 119.99997 * 0.44538 * 17 16 15 19 19 C 1.38231 * 120.00303 * 359.81117 * 18 17 16 20 20 C 1.38237 * 119.99887 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.47444 * 240.00011 * 2 1 3 22 22 C 1.52996 * 117.49856 * 123.61618 * 21 2 1 23 23 C 1.52996 * 60.00269 * 252.51603 * 22 21 2 24 24 H 1.09002 * 109.47362 * 303.44134 * 1 2 3 25 25 H 1.08998 * 109.47158 * 63.44574 * 1 2 3 26 26 H 1.09003 * 109.46929 * 183.44990 * 1 2 3 27 27 H 1.09006 * 109.47233 * 191.30575 * 3 2 1 28 28 H 1.08999 * 109.46996 * 311.30735 * 3 2 1 29 29 H 1.09000 * 109.46998 * 71.30992 * 3 2 1 30 30 H 1.00900 * 110.99799 * 49.94529 * 4 2 1 31 31 H 0.97001 * 119.99655 * 180.02562 * 10 9 7 32 32 H 1.07996 * 120.00009 * 359.97438 * 16 15 5 33 33 H 1.08005 * 119.99951 * 180.27252 * 17 16 15 34 34 H 1.08005 * 120.00031 * 179.82845 * 18 17 16 35 35 H 1.07997 * 120.00590 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.00168 * 180.02562 * 20 19 18 37 37 H 1.08992 * 115.55154 * 269.33186 * 21 2 1 38 38 H 1.08999 * 117.49971 * 0.02562 * 22 21 2 39 39 H 1.09001 * 117.49644 * 145.02027 * 22 21 2 40 40 H 1.09004 * 117.49466 * 252.51424 * 23 22 21 41 41 H 1.08991 * 117.49743 * 107.49235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4808 -0.8397 1.1627 6 1 3.9127 -0.0310 0.5732 7 6 3.8368 -2.1634 0.5366 8 1 4.4436 -2.1925 -0.3564 9 6 3.3831 -3.3369 1.1004 10 7 2.5134 -3.2995 2.0862 11 14 4.0037 -4.9798 0.4641 12 1 5.2184 -5.3769 1.2205 13 1 2.9497 -6.0105 0.6440 14 1 4.3363 -4.8585 -0.9781 15 6 4.0266 -0.7849 2.5663 16 6 3.2550 -1.2244 3.6256 17 6 3.7574 -1.1784 4.9126 18 6 5.0279 -0.6842 5.1413 19 6 5.7976 -0.2397 4.0827 20 6 5.2969 -0.2899 2.7952 21 6 2.0400 -0.7212 -1.2492 22 6 2.9839 0.0497 -2.1741 23 6 1.5415 -0.2212 -2.6066 24 1 -0.3634 0.5663 0.8575 25 1 -0.3633 0.4594 -0.9192 26 1 -0.3633 -1.0258 0.0618 27 1 3.1112 1.4492 -0.2015 28 1 1.5214 2.0112 -0.7720 29 1 1.8505 1.8948 0.9735 30 1 1.5687 -1.5883 1.3092 31 1 2.1945 -4.1252 2.4831 32 1 2.2608 -1.6067 3.4474 33 1 3.1561 -1.5259 5.7398 34 1 5.4194 -0.6456 6.1472 35 1 6.7904 0.1460 4.2613 36 1 5.8984 0.0570 1.9679 37 1 2.2076 -1.7925 -1.1381 38 1 3.2418 1.0706 -1.8925 39 1 3.7729 -0.5143 -2.6716 40 1 1.3816 -0.9636 -3.3886 41 1 0.8504 0.6215 -2.6096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232531279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:58 Heat of formation + Delta-G solvation = 43.863782 kcal Electronic energy + Delta-G solvation = -20437.956256 eV Core-core repulsion = 17704.066756 eV Total energy + Delta-G solvation = -2733.889500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41153 -39.29770 -36.25082 -34.23578 -32.49041 -31.31210 -30.04935 -28.32651 -27.64416 -24.61256 -23.58218 -22.95612 -22.79094 -21.49542 -19.11318 -18.37841 -17.47884 -17.16157 -16.53279 -15.83172 -15.63583 -15.34322 -15.14113 -14.56871 -14.12344 -13.84234 -13.50809 -13.33128 -13.27191 -13.18127 -12.91764 -12.83946 -12.58716 -12.39952 -12.16789 -12.05273 -11.82851 -11.64592 -11.58319 -11.29087 -11.15393 -11.04139 -10.50079 -10.43495 -9.39134 -9.04767 -8.67533 -7.90980 -6.15185 0.91621 1.06091 1.35664 1.41352 1.45306 2.41936 3.10612 3.21301 3.43188 3.93841 4.00613 4.25400 4.36048 4.40544 4.41772 4.49170 4.55671 4.60169 4.74709 4.83874 4.87450 4.92896 5.05596 5.06897 5.09397 5.12396 5.26100 5.31894 5.33468 5.38559 5.54344 5.55706 5.61127 5.69387 5.76026 5.81989 5.96915 6.16105 6.23186 6.45061 6.60685 6.69978 7.15318 7.37142 7.56606 8.91306 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.009720 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.617069 B = 2879.848303 C = 3813.893188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.136 3.864 3 C -0.129 4.129 4 N -0.678 5.678 5 C 0.248 3.752 6 H 0.032 0.968 7 C -0.532 4.532 8 H 0.039 0.961 9 C 0.042 3.958 10 N -0.879 5.879 11 Si 0.927 3.073 12 H -0.288 1.288 13 H -0.284 1.284 14 H -0.279 1.279 15 C -0.043 4.043 16 C -0.074 4.074 17 C -0.157 4.157 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.164 4.164 22 C -0.184 4.184 23 C -0.172 4.172 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.354 0.646 31 H 0.263 0.737 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 6.493 -1.744 6.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.045 3.955 3 C -0.187 4.187 4 N -0.312 5.312 5 C 0.139 3.861 6 H 0.050 0.950 7 C -0.571 4.571 8 H 0.058 0.942 9 C -0.159 4.159 10 N -0.518 5.518 11 Si 0.756 3.244 12 H -0.215 1.215 13 H -0.210 1.210 14 H -0.204 1.204 15 C -0.044 4.044 16 C -0.093 4.093 17 C -0.175 4.175 18 C -0.169 4.169 19 C -0.160 4.160 20 C -0.173 4.173 21 C -0.184 4.184 22 C -0.221 4.221 23 C -0.210 4.210 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.178 0.822 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.523 6.925 -1.233 7.197 hybrid contribution 0.763 -2.235 -0.998 2.564 sum -0.760 4.690 -2.231 5.249 Atomic orbital electron populations 1.21738 0.93944 1.00934 1.01800 1.20450 0.94313 0.93502 0.87283 1.21918 1.00316 0.95218 1.01217 1.61053 1.06687 1.28319 1.35160 1.17911 0.86550 0.93234 0.88381 0.94982 1.21633 1.32535 0.92411 1.10536 0.94226 1.25320 0.95049 1.00496 0.95076 1.69692 1.29689 1.27584 1.24799 0.86053 0.78023 0.81981 0.78381 1.21507 1.20983 1.20407 1.20415 0.93401 0.93535 0.97066 1.21306 1.01294 0.95350 0.91324 1.21381 0.96904 1.02048 0.97175 1.21146 0.94883 1.01746 0.99167 1.21126 1.00164 1.02169 0.92544 1.21090 0.96230 1.02883 0.97067 1.23158 1.03758 0.99546 0.91941 1.22990 0.93157 1.01528 1.04424 1.22973 0.96754 1.03452 0.97791 0.92476 0.90946 0.94345 0.93473 0.91314 0.93206 0.82182 0.92719 0.85502 0.86394 0.84955 0.85007 0.87432 0.89969 0.87964 0.90853 0.89473 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.49 71.98 0.61 -3.43 16 2 C 0.14 4.98 0.82 3.53 0.00 4.99 16 3 C -0.13 -4.22 6.95 71.98 0.50 -3.72 16 4 N -0.68 -29.72 4.90 -455.94 -2.24 -31.96 16 5 C 0.25 11.60 1.92 43.42 0.08 11.69 16 6 H 0.03 1.51 5.80 -2.39 -0.01 1.49 16 7 C -0.53 -27.02 6.29 25.60 0.16 -26.85 16 8 H 0.04 2.09 7.83 -2.91 -0.02 2.07 16 9 C 0.04 2.16 5.03 84.65 0.43 2.58 16 10 N -0.88 -44.73 8.03 21.45 0.17 -44.56 16 11 Si 0.93 42.33 29.55 68.60 2.03 44.36 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 C -0.04 -2.01 4.75 -19.86 -0.09 -2.11 16 16 C -0.07 -3.43 7.73 22.27 0.17 -3.25 16 17 C -0.16 -6.34 10.05 22.27 0.22 -6.12 16 18 C -0.15 -5.50 10.05 22.27 0.22 -5.28 16 19 C -0.14 -5.27 10.05 22.27 0.22 -5.05 16 20 C -0.15 -6.56 9.70 22.27 0.22 -6.35 16 21 C -0.16 -6.09 3.80 -10.79 -0.04 -6.13 16 22 C -0.18 -6.05 9.50 30.59 0.29 -5.76 16 23 C -0.17 -5.06 9.53 30.59 0.29 -4.77 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.92 6.86 -2.39 -0.02 1.91 16 26 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 27 H 0.05 1.61 4.94 -2.38 -0.01 1.60 16 28 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 30 H 0.35 17.11 5.73 -89.69 -0.51 16.60 16 31 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 32 H 0.13 6.30 5.72 -2.91 -0.02 6.29 16 33 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 35 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.08 3.72 6.48 -2.39 -0.02 3.71 16 38 H 0.10 3.13 5.76 -2.39 -0.01 3.11 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.11 2.66 7.26 -2.39 -0.02 2.64 16 Total: -1.00 -52.92 314.15 3.75 -49.16 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: 0.50 Total: 42.54 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 3.29 Total: -59.55 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.06 Total: -76.51 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -52.92 3.75 -49.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232531279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.028 kcal (2) G-P(sol) polarization free energy of solvation -52.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds