Wall clock time and date at job start Mon Mar 30 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46939 * 2 1 4 4 C 1.52999 * 109.47034 * 120.00057 * 2 1 3 5 5 C 1.53782 * 113.69024 * 80.93948 * 4 2 1 6 6 C 1.53781 * 87.08017 * 139.98994 * 5 4 2 7 7 N 1.46495 * 113.69333 * 89.12480 * 6 5 4 8 8 C 1.38859 * 120.00163 * 107.46070 * 7 6 5 9 9 C 1.39573 * 119.84117 * 359.73297 * 8 7 6 10 10 C 1.36341 * 120.16138 * 179.71881 * 9 8 7 11 11 C 1.40879 * 119.83345 * 0.54752 * 10 9 8 12 12 C 1.41142 * 120.15361 * 179.70038 * 11 10 9 13 13 H 1.08005 * 119.99839 * 204.62952 * 12 11 10 14 14 C 1.39864 * 120.00135 * 24.63396 * 12 11 10 15 15 N 1.30908 * 119.99588 * 17.95170 * 14 12 11 16 16 Si 1.86793 * 120.00138 * 197.95649 * 14 12 11 17 17 H 1.48500 * 109.47333 * 89.99767 * 16 14 12 18 18 H 1.48503 * 109.47235 * 209.99480 * 16 14 12 19 19 H 1.48500 * 109.47101 * 329.99322 * 16 14 12 20 20 C 1.40888 * 119.69557 * 359.72380 * 11 10 9 21 21 C 1.36348 * 119.83270 * 359.97438 * 20 11 10 22 22 C 1.53778 * 87.08185 * 334.56583 * 6 5 4 23 23 H 1.08998 * 109.47289 * 299.99509 * 1 2 3 24 24 H 1.09000 * 109.47520 * 59.99955 * 1 2 3 25 25 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47137 * 239.99974 * 2 1 3 27 27 H 1.09000 * 109.47227 * 60.00029 * 3 2 1 28 28 H 1.09005 * 109.46730 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47051 * 300.00332 * 3 2 1 30 30 H 1.08994 * 112.85059 * 309.66759 * 4 2 1 31 31 H 1.08993 * 113.61137 * 254.53500 * 5 4 2 32 32 H 1.08997 * 113.61526 * 25.44233 * 5 4 2 33 33 H 1.09002 * 113.61233 * 220.01424 * 6 5 4 34 34 H 0.97002 * 120.00274 * 287.46093 * 7 6 5 35 35 H 1.08001 * 119.91388 * 359.97270 * 9 8 7 36 36 H 1.07993 * 120.08036 * 180.27295 * 10 9 8 37 37 H 0.97003 * 119.99311 * 180.02562 * 15 14 12 38 38 H 1.07994 * 120.08982 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.92236 * 179.97438 * 21 20 11 40 40 H 1.09008 * 113.61319 * 270.88470 * 22 6 5 41 41 H 1.09000 * 113.61496 * 139.98387 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 2.0368 -2.2538 1.1224 6 6 3.3855 -2.2391 1.8611 7 7 3.2591 -2.3089 3.3189 8 6 3.5990 -3.4759 3.9902 9 6 4.0555 -4.5823 3.2723 10 6 4.3965 -5.7296 3.9254 11 6 4.2761 -5.8002 5.3272 12 6 4.6212 -6.9866 6.0095 13 1 4.1823 -7.2029 6.9724 14 6 5.5315 -7.8820 5.4389 15 7 6.3216 -7.4856 4.4733 16 14 5.6199 -9.6434 6.0544 17 1 4.6802 -10.4881 5.2743 18 1 7.0030 -10.1575 5.8871 19 1 5.2468 -9.6849 7.4912 20 6 3.8092 -4.6813 6.0449 21 6 3.4777 -3.5385 5.3792 22 6 3.5733 -0.8094 1.3268 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.5765 -0.3581 2.1665 31 1 1.2369 -2.7367 1.6836 32 1 2.1063 -2.6070 0.0936 33 1 4.1084 -2.9520 1.4643 34 1 2.9379 -1.5399 3.8152 35 1 4.1427 -4.5282 2.1972 36 1 4.7537 -6.5834 3.3690 37 1 6.9527 -8.1068 4.0773 38 1 3.7141 -4.7286 7.1196 39 1 3.1193 -2.6802 5.9279 40 1 4.0628 -0.7677 0.3537 41 1 4.0138 -0.1262 2.0530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232540824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:46 Heat of formation + Delta-G solvation = 11.198310 kcal Electronic energy + Delta-G solvation = -18741.932911 eV Core-core repulsion = 16006.626929 eV Total energy + Delta-G solvation = -2735.305981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.80527 -39.29452 -36.35812 -35.10041 -33.36778 -31.35841 -30.10950 -28.23171 -26.58007 -26.10173 -25.39926 -23.08222 -22.25173 -21.14764 -19.81347 -19.15306 -17.94661 -16.83495 -16.54705 -16.11263 -15.64726 -15.52085 -14.73628 -14.59619 -14.45780 -14.13478 -13.90776 -13.77256 -13.49439 -13.27035 -13.19640 -12.94132 -12.75255 -12.63786 -12.51710 -12.26293 -12.02982 -11.83316 -11.56514 -11.41724 -11.17107 -11.12791 -10.95846 -10.70335 -10.23063 -9.40231 -8.54796 -8.14556 -6.00434 1.10600 1.18926 1.40154 1.52805 1.59094 2.27616 2.83689 2.86415 3.68663 3.73480 3.84066 3.88465 4.11200 4.24419 4.35764 4.48991 4.52527 4.57052 4.68984 4.86527 4.88789 4.90040 4.97601 5.00365 5.04230 5.06917 5.15462 5.19301 5.27181 5.31253 5.34113 5.42630 5.47158 5.50188 5.62567 5.73969 5.83629 5.97210 6.19197 6.40148 6.68759 6.89448 7.08712 7.16273 7.33383 8.48591 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046916 B = 0.003593 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.666110 B = 7791.863695 C = 7954.531473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.152 4.152 6 C 0.124 3.876 7 N -0.730 5.730 8 C 0.114 3.886 9 C -0.175 4.175 10 C -0.143 4.143 11 C 0.035 3.965 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.031 3.969 15 N -0.841 5.841 16 Si 0.977 3.023 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.261 1.261 20 C -0.196 4.196 21 C -0.167 4.167 22 C -0.132 4.132 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.395 0.605 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.282 0.718 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 13.118 -9.431 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.107 4.107 5 C -0.191 4.191 6 C 0.016 3.984 7 N -0.363 5.363 8 C 0.014 3.986 9 C -0.197 4.197 10 C -0.163 4.163 11 C 0.032 3.968 12 C -0.538 4.538 13 H 0.085 0.915 14 C -0.181 4.181 15 N -0.470 5.470 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.185 1.185 20 C -0.216 4.216 21 C -0.189 4.189 22 C -0.170 4.170 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.230 0.770 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.914 12.993 -9.737 17.647 hybrid contribution 0.143 -0.784 0.605 1.001 sum -6.771 12.209 -9.132 16.682 Atomic orbital electron populations 1.21798 0.95172 1.01453 1.01821 1.21083 0.95788 0.96432 0.96960 1.21793 1.01164 0.95366 1.01777 1.22461 0.95342 0.94325 0.98580 1.23559 0.97957 0.96945 1.00664 1.21710 0.97206 0.98332 0.81120 1.43576 1.75660 1.12624 1.04450 1.17449 1.02182 0.87967 0.90952 1.20304 1.07152 0.93958 0.98258 1.20871 1.03471 0.97426 0.94576 1.17819 0.93461 0.93119 0.92378 1.19599 1.24001 1.04697 1.05471 0.91457 1.26619 0.92932 1.04100 0.94409 1.69927 1.16458 1.37275 1.23309 0.85281 0.78241 0.77011 0.79563 1.18963 1.19506 1.18490 1.20749 1.09166 0.93782 0.97940 1.20097 1.07920 0.98416 0.92451 1.23325 0.96750 0.95135 1.01781 0.92938 0.92030 0.93339 0.91057 0.92930 0.92504 0.92188 0.90027 0.93096 0.89076 0.91334 0.76992 0.87641 0.88344 0.90771 0.88545 0.86514 0.88145 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.18 71.98 0.66 -1.58 16 2 C -0.08 -1.35 2.65 -10.79 -0.03 -1.37 16 3 C -0.14 -2.01 9.01 71.98 0.65 -1.36 16 4 C -0.09 -1.73 2.99 -10.27 -0.03 -1.76 16 5 C -0.15 -3.67 7.42 31.12 0.23 -3.44 16 6 C 0.12 3.48 4.10 45.52 0.19 3.67 16 7 N -0.73 -24.18 5.41 -316.06 -1.71 -25.89 16 8 C 0.11 4.90 6.67 38.67 0.26 5.16 16 9 C -0.17 -8.36 9.19 22.15 0.20 -8.16 16 10 C -0.14 -7.88 8.64 22.47 0.19 -7.69 16 11 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 12 C -0.51 -28.92 9.03 23.38 0.21 -28.70 16 13 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 14 C 0.03 1.67 5.13 85.22 0.44 2.11 16 15 N -0.84 -46.56 10.96 21.82 0.24 -46.32 16 16 Si 0.98 40.65 29.60 68.60 2.03 42.68 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 C -0.20 -10.00 9.74 22.48 0.22 -9.78 16 21 C -0.17 -7.43 9.82 22.15 0.22 -7.21 16 22 C -0.13 -2.75 6.49 31.12 0.20 -2.55 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.07 1.13 7.98 -2.39 -0.02 1.11 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.79 7.50 -2.38 -0.02 0.77 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.98 7.99 -2.39 -0.02 1.96 16 33 H 0.07 2.18 6.11 -2.39 -0.01 2.16 16 34 H 0.40 11.45 8.70 -92.71 -0.81 10.64 16 35 H 0.11 4.60 6.02 -2.91 -0.02 4.58 16 36 H 0.10 5.70 6.16 -2.91 -0.02 5.68 16 37 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 38 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 39 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.10 1.82 8.10 -2.38 -0.02 1.80 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -61.24 328.92 4.24 -57.00 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.19 Total: 33.34 kcal Atomic # 6 Polarization: -64.30 SS G_CDS: 3.49 Total: -60.80 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.47 Total: -72.21 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -61.24 4.24 -57.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232540824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.194 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds