Wall clock time and date at job start Mon Mar 30 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00466 * 2 1 4 4 C 1.52997 * 109.47407 * 125.00067 * 3 2 1 5 5 C 1.52996 * 109.47105 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47105 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47444 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47722 * 179.97438 * 7 6 5 9 9 C 1.38856 * 120.00469 * 179.97438 * 8 7 6 10 10 C 1.39564 * 119.83805 * 359.72843 * 9 8 7 11 11 C 1.36344 * 120.15889 * 179.72127 * 10 9 8 12 12 C 1.40890 * 119.83562 * 0.54827 * 11 10 9 13 13 C 1.41130 * 120.15796 * 179.70390 * 12 11 10 14 14 H 1.08002 * 119.99890 * 204.63732 * 13 12 11 15 15 C 1.39868 * 120.00093 * 24.62666 * 13 12 11 16 16 N 1.30900 * 119.99549 * 17.96371 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 197.95588 * 15 13 12 18 18 H 1.48506 * 109.46918 * 60.00132 * 17 15 13 19 19 H 1.48494 * 109.47059 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47045 * 300.00576 * 17 15 13 21 21 C 1.40890 * 119.68649 * 359.72642 * 12 11 10 22 22 C 1.36339 * 119.83897 * 359.97438 * 21 12 11 23 23 H 1.08003 * 119.99877 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.99990 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99877 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46940 * 4.99962 * 3 2 1 27 27 H 1.09006 * 109.47142 * 245.00597 * 3 2 1 28 28 H 1.08994 * 109.47389 * 60.00084 * 4 3 2 29 29 H 1.09004 * 109.46883 * 300.00346 * 4 3 2 30 30 H 1.09003 * 109.47407 * 59.99794 * 5 4 3 31 31 H 1.09004 * 109.47217 * 299.99754 * 5 4 3 32 32 H 1.08994 * 109.47389 * 59.99697 * 6 5 4 33 33 H 1.08996 * 109.46960 * 299.99724 * 6 5 4 34 34 H 1.09003 * 109.47176 * 59.99728 * 7 6 5 35 35 H 1.09004 * 109.47110 * 299.99896 * 7 6 5 36 36 H 0.97004 * 119.99357 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.92350 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.08326 * 180.27560 * 11 10 9 39 39 H 0.97000 * 119.99705 * 180.02562 * 16 15 13 40 40 H 1.08004 * 120.07951 * 179.97438 * 21 12 11 41 41 H 1.07997 * 119.91946 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6582 1.1819 6 6 4.7717 2.6859 2.3631 7 6 5.5369 4.0109 2.3631 8 7 6.4672 4.0377 3.4944 9 6 7.2762 5.1470 3.7020 10 6 7.2045 6.2322 2.8273 11 6 7.9919 7.3270 3.0282 12 6 8.8877 7.3563 4.1152 13 6 9.7104 8.4835 4.3258 14 1 10.6389 8.3807 4.8678 15 6 9.3233 9.7338 3.8326 16 7 8.0764 9.9470 3.4960 17 14 10.5855 11.0992 3.6544 18 1 11.6584 10.6633 2.7248 19 1 9.9262 12.3154 3.1148 20 1 11.1754 11.4044 4.9827 21 6 8.9588 6.2547 4.9906 22 6 8.1610 5.1691 4.7811 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4026 -0.9315 28 1 3.7400 0.5065 1.0921 29 1 2.4773 1.2355 2.1130 30 1 3.0946 3.4846 1.2716 31 1 4.3575 2.7561 0.2505 32 1 5.4768 1.8597 2.2729 33 1 4.2144 2.5879 3.2946 34 1 4.8320 4.8375 2.4531 35 1 6.0943 4.1085 1.4315 36 1 6.5184 3.2802 4.0982 37 1 6.5208 6.2064 1.9917 38 1 7.9322 8.1679 2.3531 39 1 7.8080 10.8140 3.1535 40 1 9.6435 6.2702 5.8257 41 1 8.2147 4.3238 5.4511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232583206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:25 Heat of formation + Delta-G solvation = 11.752919 kcal Electronic energy + Delta-G solvation = -17743.603753 eV Core-core repulsion = 15008.321821 eV Total energy + Delta-G solvation = -2735.281932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -38.04486 -36.95514 -35.42436 -33.80538 -32.60640 -30.13982 -29.41653 -28.21590 -25.72879 -23.91237 -22.34633 -21.33661 -20.62989 -19.95221 -19.78765 -17.16962 -16.17086 -16.00329 -15.30975 -15.02786 -14.82025 -14.30834 -13.87433 -13.66023 -13.23731 -12.72334 -12.66805 -12.40935 -12.20497 -11.95595 -11.67028 -11.59799 -11.32247 -11.17979 -11.00857 -10.98472 -10.86056 -10.63082 -10.57771 -10.39376 -9.67728 -9.59472 -9.24854 -9.17905 -8.48424 -7.45705 -6.60921 -6.34768 -3.99826 1.98566 2.95956 3.13486 3.16115 3.19409 3.39386 4.07783 4.25568 4.56951 4.71531 4.79847 4.89153 4.96720 5.06697 5.17683 5.42258 5.48408 5.56987 5.60886 5.74148 5.79199 5.85355 5.88245 5.99029 6.10615 6.29874 6.31299 6.33392 6.34071 6.38116 6.48247 6.97595 6.98233 7.23743 7.39415 7.59593 7.72715 7.88350 8.18528 8.33268 8.53783 8.75217 8.84272 9.09273 9.19058 10.40725 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043333 B = 0.002708 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.999265 B =10339.009335 C =10853.827688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.097 4.097 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.138 3.862 8 N -0.764 5.764 9 C 0.092 3.908 10 C -0.164 4.164 11 C -0.124 4.124 12 C 0.073 3.927 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.808 5.808 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.186 4.186 22 C -0.161 4.161 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.383 0.617 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.276 0.724 40 H 0.091 0.909 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.394 -13.780 -5.999 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.169 4.169 3 C -0.135 4.135 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.166 4.166 7 C 0.012 3.988 8 N -0.399 5.399 9 C -0.005 4.005 10 C -0.186 4.186 11 C -0.144 4.144 12 C 0.070 3.930 13 C -0.499 4.499 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.436 5.436 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.207 4.207 22 C -0.183 4.183 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.215 0.785 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.635 -13.492 -6.243 18.279 hybrid contribution 0.447 0.392 0.172 0.619 sum -10.188 -13.100 -6.071 17.671 Atomic orbital electron populations 1.23855 0.96032 1.01761 1.02041 1.23021 0.96052 0.98698 0.99153 1.20815 0.98327 0.95167 0.99143 1.21533 0.97686 0.97884 0.98028 1.21525 0.98017 0.97424 0.98560 1.21748 0.98163 0.97952 0.98737 1.21002 0.91511 0.96036 0.90202 1.43884 1.45129 1.18911 1.32025 1.17369 0.96289 0.88704 0.98115 1.20101 1.03634 0.94848 1.00056 1.20936 0.98451 0.96653 0.98390 1.17497 0.92763 0.92189 0.90542 1.19325 1.06076 0.92101 1.32361 0.91002 1.25797 0.95187 0.99732 0.93374 1.69851 1.16081 1.24046 1.33592 0.86462 0.81542 0.79680 0.79476 1.19103 1.20614 1.19292 1.20541 1.03387 0.96180 1.00566 1.19813 1.00808 0.99036 0.98635 0.88618 0.88700 0.87533 0.91473 0.90940 0.91908 0.91935 0.91710 0.91710 0.91802 0.91786 0.93640 0.93689 0.78494 0.89430 0.86397 0.91304 0.89074 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 14.32 29.02 0.42 -1.03 16 2 C -0.15 -1.15 9.52 -36.02 -0.34 -1.49 16 3 C -0.10 -0.76 5.66 -27.88 -0.16 -0.92 16 4 C -0.11 -0.95 5.20 -26.73 -0.14 -1.08 16 5 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 6 C -0.13 -1.44 5.33 -26.73 -0.14 -1.58 16 7 C 0.14 2.08 4.89 -4.04 -0.02 2.07 16 8 N -0.76 -13.71 5.70 -58.50 -0.33 -14.04 16 9 C 0.09 2.07 6.67 -83.69 -0.56 1.52 16 10 C -0.16 -3.97 9.23 -39.77 -0.37 -4.33 16 11 C -0.12 -3.34 8.64 -39.26 -0.34 -3.68 16 12 C 0.07 2.02 5.57 -106.79 -0.60 1.42 16 13 C -0.47 -12.91 9.03 -37.88 -0.34 -13.25 16 14 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 15 C 0.07 1.94 5.13 -17.34 -0.09 1.86 16 16 N -0.81 -21.80 10.96 55.54 0.61 -21.19 16 17 Si 0.90 19.49 29.60 -169.99 -5.03 14.46 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.19 -4.73 9.74 -39.26 -0.38 -5.11 16 22 C -0.16 -3.71 9.82 -39.77 -0.39 -4.10 16 23 H 0.10 0.66 7.84 -52.48 -0.41 0.25 16 24 H 0.09 0.58 8.06 -52.49 -0.42 0.16 16 25 H 0.11 0.73 8.06 -52.48 -0.42 0.31 16 26 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 35 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 36 H 0.38 6.08 8.47 -40.82 -0.35 5.74 16 37 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 38 H 0.12 3.27 6.16 -52.49 -0.32 2.94 16 39 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 40 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -28.61 339.76 -10.08 -38.70 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.86 Total: 7.93 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -3.59 Total: -30.98 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.28 Total: -35.23 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.61 -10.08 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232583206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.451 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds