Wall clock time and date at job start Mon Mar 30 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00466 * 2 1 4 4 C 1.52997 * 109.47407 * 125.00067 * 3 2 1 5 5 C 1.52996 * 109.47105 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47105 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47444 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47722 * 179.97438 * 7 6 5 9 9 C 1.38856 * 120.00469 * 179.97438 * 8 7 6 10 10 C 1.39564 * 119.83805 * 359.72843 * 9 8 7 11 11 C 1.36344 * 120.15889 * 179.72127 * 10 9 8 12 12 C 1.40890 * 119.83562 * 0.54827 * 11 10 9 13 13 C 1.41130 * 120.15796 * 179.70390 * 12 11 10 14 14 H 1.08002 * 119.99890 * 204.63732 * 13 12 11 15 15 C 1.39868 * 120.00093 * 24.62666 * 13 12 11 16 16 N 1.30900 * 119.99549 * 17.96371 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 197.95588 * 15 13 12 18 18 H 1.48506 * 109.46918 * 60.00132 * 17 15 13 19 19 H 1.48494 * 109.47059 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47045 * 300.00576 * 17 15 13 21 21 C 1.40890 * 119.68649 * 359.72642 * 12 11 10 22 22 C 1.36339 * 119.83897 * 359.97438 * 21 12 11 23 23 H 1.08003 * 119.99877 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.99990 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99877 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46940 * 4.99962 * 3 2 1 27 27 H 1.09006 * 109.47142 * 245.00597 * 3 2 1 28 28 H 1.08994 * 109.47389 * 60.00084 * 4 3 2 29 29 H 1.09004 * 109.46883 * 300.00346 * 4 3 2 30 30 H 1.09003 * 109.47407 * 59.99794 * 5 4 3 31 31 H 1.09004 * 109.47217 * 299.99754 * 5 4 3 32 32 H 1.08994 * 109.47389 * 59.99697 * 6 5 4 33 33 H 1.08996 * 109.46960 * 299.99724 * 6 5 4 34 34 H 1.09003 * 109.47176 * 59.99728 * 7 6 5 35 35 H 1.09004 * 109.47110 * 299.99896 * 7 6 5 36 36 H 0.97004 * 119.99357 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.92350 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.08326 * 180.27560 * 11 10 9 39 39 H 0.97000 * 119.99705 * 180.02562 * 16 15 13 40 40 H 1.08004 * 120.07951 * 179.97438 * 21 12 11 41 41 H 1.07997 * 119.91946 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6582 1.1819 6 6 4.7717 2.6859 2.3631 7 6 5.5369 4.0109 2.3631 8 7 6.4672 4.0377 3.4944 9 6 7.2762 5.1470 3.7020 10 6 7.2045 6.2322 2.8273 11 6 7.9919 7.3270 3.0282 12 6 8.8877 7.3563 4.1152 13 6 9.7104 8.4835 4.3258 14 1 10.6389 8.3807 4.8678 15 6 9.3233 9.7338 3.8326 16 7 8.0764 9.9470 3.4960 17 14 10.5855 11.0992 3.6544 18 1 11.6584 10.6633 2.7248 19 1 9.9262 12.3154 3.1148 20 1 11.1754 11.4044 4.9827 21 6 8.9588 6.2547 4.9906 22 6 8.1610 5.1691 4.7811 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4026 -0.9315 28 1 3.7400 0.5065 1.0921 29 1 2.4773 1.2355 2.1130 30 1 3.0946 3.4846 1.2716 31 1 4.3575 2.7561 0.2505 32 1 5.4768 1.8597 2.2729 33 1 4.2144 2.5879 3.2946 34 1 4.8320 4.8375 2.4531 35 1 6.0943 4.1085 1.4315 36 1 6.5184 3.2802 4.0982 37 1 6.5208 6.2064 1.9917 38 1 7.9322 8.1679 2.3531 39 1 7.8080 10.8140 3.1535 40 1 9.6435 6.2702 5.8257 41 1 8.2147 4.3238 5.4511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232583206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:25 Heat of formation + Delta-G solvation = -1.589063 kcal Electronic energy + Delta-G solvation = -17744.182305 eV Core-core repulsion = 15008.321821 eV Total energy + Delta-G solvation = -2735.860483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.80623 -37.89675 -36.70686 -35.24845 -33.98044 -31.40117 -31.33097 -29.72977 -27.00365 -25.52021 -23.64970 -22.61123 -21.83024 -21.54745 -20.54369 -19.14906 -17.74346 -16.90349 -16.80949 -16.38309 -16.04466 -15.63485 -15.16820 -14.65921 -14.57204 -14.27259 -14.05561 -13.84156 -13.69660 -13.25283 -13.14223 -12.86715 -12.73062 -12.56924 -12.33991 -12.18227 -12.03485 -11.84731 -11.59832 -11.46756 -11.35907 -11.17176 -11.03997 -10.28353 -10.16964 -9.41069 -8.54699 -8.16381 -6.00445 1.11227 1.18558 1.40192 1.42950 1.51363 1.60378 2.27679 2.84356 2.91887 3.82285 3.84849 4.01382 4.14506 4.20266 4.27853 4.43537 4.45426 4.50761 4.64685 4.70238 4.75289 4.88019 4.97443 5.00149 5.05183 5.07728 5.15123 5.16365 5.25745 5.29939 5.43957 5.45821 5.49652 5.69201 5.78482 5.80639 5.92558 5.96661 6.18860 6.39179 6.67259 6.87408 7.08385 7.16020 7.33646 8.48643 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043333 B = 0.002708 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.999265 B =10339.009335 C =10853.827688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.097 4.097 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.116 4.116 7 C 0.134 3.866 8 N -0.754 5.754 9 C 0.109 3.891 10 C -0.176 4.176 11 C -0.144 4.144 12 C 0.033 3.967 13 C -0.506 4.506 14 H 0.069 0.931 15 C 0.030 3.970 16 N -0.842 5.842 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.261 1.261 21 C -0.195 4.195 22 C -0.167 4.167 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.397 0.603 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.282 0.718 40 H 0.098 0.902 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 -15.222 -6.143 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.179 4.179 3 C -0.134 4.134 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.153 4.153 7 C 0.009 3.991 8 N -0.389 5.389 9 C 0.010 3.990 10 C -0.199 4.199 11 C -0.164 4.164 12 C 0.030 3.970 13 C -0.537 4.537 14 H 0.087 0.913 15 C -0.182 4.182 16 N -0.470 5.470 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.186 1.186 21 C -0.215 4.215 22 C -0.189 4.189 23 H 0.115 0.885 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.231 0.769 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.194 -14.983 -6.385 19.763 hybrid contribution 0.494 0.668 0.214 0.858 sum -10.700 -14.315 -6.171 18.907 Atomic orbital electron populations 1.24013 0.96116 1.02355 1.01484 1.23111 0.96286 0.98856 0.99656 1.20799 0.98245 0.95334 0.99032 1.21464 0.97687 0.97157 0.98211 1.21496 0.97702 0.98179 0.97841 1.21654 0.98190 0.95724 0.99780 1.21176 0.90980 0.98111 0.88849 1.43964 1.44267 1.17816 1.32861 1.17497 0.95585 0.89197 0.96758 1.20255 1.03683 0.94803 1.01127 1.20870 0.99819 0.97224 0.98531 1.17845 0.94013 0.93423 0.91726 1.19564 1.06502 0.93317 1.34312 0.91315 1.26647 0.97114 1.01898 0.92534 1.69919 1.17779 1.25008 1.34321 0.85324 0.78631 0.76491 0.79602 1.18748 1.19473 1.18590 1.20768 1.03911 0.96405 1.00440 1.20131 1.00135 0.99378 0.99277 0.88545 0.87718 0.86841 0.91695 0.90725 0.91362 0.92020 0.91974 0.91568 0.90862 0.91218 0.94569 0.94100 0.76863 0.87897 0.88305 0.90752 0.88382 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.16 -2.16 9.52 25.65 0.24 -1.92 16 3 C -0.10 -1.34 5.66 29.85 0.17 -1.17 16 4 C -0.11 -1.54 5.20 30.59 0.16 -1.38 16 5 C -0.11 -1.93 5.21 30.59 0.16 -1.77 16 6 C -0.12 -2.29 5.33 30.59 0.16 -2.12 16 7 C 0.13 3.77 4.89 86.38 0.42 4.19 16 8 N -0.75 -25.21 5.70 -338.99 -1.93 -27.14 16 9 C 0.11 4.76 6.67 38.67 0.26 5.02 16 10 C -0.18 -8.54 9.23 22.15 0.20 -8.33 16 11 C -0.14 -7.99 8.64 22.48 0.19 -7.80 16 12 C 0.03 1.87 5.57 -21.27 -0.12 1.75 16 13 C -0.51 -28.88 9.03 23.38 0.21 -28.67 16 14 H 0.07 3.79 7.91 -2.91 -0.02 3.76 16 15 C 0.03 1.60 5.13 85.23 0.44 2.04 16 16 N -0.84 -46.76 10.96 21.82 0.24 -46.52 16 17 Si 0.98 40.61 29.60 68.60 2.03 42.64 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 C -0.20 -9.96 9.74 22.48 0.22 -9.74 16 22 C -0.17 -7.47 9.82 22.15 0.22 -7.26 16 23 H 0.10 1.19 7.84 -2.91 -0.02 1.17 16 24 H 0.10 1.10 8.06 -2.91 -0.02 1.08 16 25 H 0.11 1.34 8.06 -2.91 -0.02 1.31 16 26 H 0.06 0.91 7.79 -2.39 -0.02 0.90 16 27 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.11 7.94 -2.39 -0.02 1.09 16 35 H 0.04 1.21 7.91 -2.38 -0.02 1.19 16 36 H 0.40 11.29 8.47 -92.71 -0.79 10.50 16 37 H 0.10 4.54 6.68 -2.91 -0.02 4.52 16 38 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 39 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 40 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -62.45 339.76 4.44 -58.01 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.20 Total: 31.80 kcal Atomic # 6 Polarization: -62.71 SS G_CDS: 3.91 Total: -58.79 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.69 Total: -73.66 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -62.45 4.44 -58.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232583206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.420 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds