Wall clock time and date at job start Mon Mar 30 2020 06:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 115.55899 * 2 1 4 4 C 1.52997 * 117.50031 * 214.31219 * 2 1 3 5 5 C 1.52997 * 117.50322 * 145.68594 * 2 1 3 6 6 H 1.08998 * 117.51522 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.50273 * 214.98223 * 5 2 1 8 8 N 1.46894 * 109.47238 * 174.98808 * 7 5 2 9 9 C 1.46901 * 111.00398 * 180.02562 * 8 7 5 10 10 H 1.09007 * 109.46260 * 325.00022 * 9 8 7 11 11 C 1.50696 * 109.47253 * 84.99602 * 9 8 7 12 12 H 1.08002 * 120.00191 * 234.80212 * 11 9 8 13 13 C 1.37870 * 119.99983 * 54.79945 * 11 9 8 14 14 N 1.31519 * 120.00096 * 2.53069 * 13 11 9 15 15 Si 1.86806 * 120.00316 * 182.52800 * 13 11 9 16 16 H 1.48500 * 109.46697 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47236 * 120.00002 * 15 13 11 18 18 H 1.48491 * 109.47486 * 240.00376 * 15 13 11 19 19 C 1.50694 * 109.47367 * 204.99786 * 9 8 7 20 20 C 1.38243 * 119.99993 * 150.29452 * 19 9 8 21 21 C 1.38228 * 119.99883 * 180.34622 * 20 19 9 22 22 C 1.38233 * 120.00290 * 359.88898 * 21 20 19 23 23 C 1.38232 * 119.99743 * 0.08771 * 22 21 20 24 24 C 1.38230 * 120.00097 * 330.57409 * 19 9 8 25 25 H 1.08997 * 109.47197 * 274.30758 * 1 2 3 26 26 H 1.09002 * 109.47588 * 34.31116 * 1 2 3 27 27 H 1.09008 * 109.46783 * 154.30993 * 1 2 3 28 28 H 1.08998 * 109.47277 * 205.68732 * 3 2 1 29 29 H 1.09005 * 109.47227 * 325.68944 * 3 2 1 30 30 H 1.09005 * 109.46834 * 85.68649 * 3 2 1 31 31 H 1.09006 * 117.49835 * 145.01937 * 4 2 1 32 32 H 1.08998 * 117.52317 * 359.97438 * 4 2 1 33 33 H 1.08997 * 109.46762 * 54.98573 * 7 5 2 34 34 H 1.09006 * 109.46837 * 294.98801 * 7 5 2 35 35 H 1.00902 * 111.00010 * 303.95494 * 8 7 5 36 36 H 0.96998 * 119.99937 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.99543 * 0.27887 * 20 19 9 38 38 H 1.08004 * 119.99805 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00002 * 180.11209 * 22 21 20 40 40 H 1.08004 * 119.99612 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.00235 * 359.70110 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6116 -1.8588 1.2681 7 6 3.5490 -0.7758 1.4715 8 7 4.0097 -1.9374 2.2436 9 6 5.2703 -1.6421 2.9376 10 1 5.8792 -0.9821 2.3196 11 6 4.9739 -0.9673 4.2521 12 1 5.4252 -0.0138 4.4835 13 6 4.1266 -1.5672 5.1593 14 7 3.6162 -2.7511 4.8992 15 14 3.7034 -0.6985 6.7580 16 1 4.4012 0.6113 6.8093 17 1 2.2362 -0.4803 6.8295 18 1 4.1358 -1.5356 7.9057 19 6 6.0179 -2.9260 3.1894 20 6 7.3993 -2.9226 3.2417 21 6 8.0854 -4.1016 3.4656 22 6 7.3901 -5.2836 3.6394 23 6 6.0087 -5.2869 3.5876 24 6 5.3226 -4.1082 3.3623 25 1 -0.3633 0.0772 1.0247 26 1 -0.3634 0.8488 -0.5793 27 1 -0.3633 -0.9262 -0.4455 28 1 3.1823 1.3086 -0.4454 29 1 1.5811 2.0744 -0.5793 30 1 2.2771 1.7414 1.0248 31 1 3.1716 -0.8750 -1.2683 32 1 1.6116 -1.8589 -1.2681 33 1 3.3890 0.0671 2.1438 34 1 4.3023 -0.5108 0.7294 35 1 3.3018 -2.2427 2.8946 36 1 3.0198 -3.1730 5.5373 37 1 7.9425 -1.9990 3.1066 38 1 9.1646 -4.0988 3.5068 39 1 7.9261 -6.2044 3.8161 40 1 5.4655 -6.2104 3.7238 41 1 4.2434 -4.1108 3.3218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232913401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:31 Heat of formation + Delta-G solvation = 40.216619 kcal Electronic energy + Delta-G solvation = -19460.155608 eV Core-core repulsion = 16726.107954 eV Total energy + Delta-G solvation = -2734.047653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.50265 -38.00602 -35.16979 -31.95379 -30.41022 -29.64597 -28.74082 -27.42965 -26.57830 -24.32260 -22.33545 -21.27709 -20.39549 -19.77175 -18.27767 -16.53224 -15.79718 -15.10039 -14.67629 -14.33214 -13.97177 -13.75550 -13.64140 -13.41869 -12.57588 -12.51579 -12.38161 -12.22353 -12.03406 -11.74348 -11.62862 -11.52962 -11.21803 -11.02518 -11.00647 -10.73793 -10.53378 -10.28188 -9.99280 -9.76416 -9.50259 -9.31244 -9.11839 -8.67521 -7.74630 -7.37850 -6.97034 -6.03879 -4.31314 2.57672 2.69319 3.19248 3.28657 3.31805 4.10144 4.29033 4.92216 5.04899 5.08818 5.14255 5.28118 5.33046 5.77862 5.81141 5.87043 5.89841 5.99943 6.02365 6.07506 6.11287 6.14505 6.22442 6.26990 6.36013 6.39557 6.50009 6.57886 6.69873 6.78059 6.86721 6.93211 6.97872 7.21579 7.35642 7.58972 7.66897 7.83617 8.00800 8.10843 8.30889 8.45168 8.85908 9.12486 9.41554 10.80569 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.006905 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.793440 B = 4054.030166 C = 5104.666724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C -0.111 4.111 4 C -0.170 4.170 5 C -0.123 4.123 6 H 0.100 0.900 7 C 0.100 3.900 8 N -0.687 5.687 9 C 0.237 3.763 10 H 0.034 0.966 11 C -0.538 4.538 12 H 0.057 0.943 13 C 0.072 3.928 14 N -0.877 5.877 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.017 4.017 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.051 4.051 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.365 0.635 36 H 0.266 0.734 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 1.621 -6.952 7.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C -0.168 4.168 4 C -0.207 4.207 5 C -0.142 4.142 6 H 0.118 0.882 7 C -0.030 4.030 8 N -0.324 5.324 9 C 0.129 3.871 10 H 0.052 0.948 11 C -0.577 4.577 12 H 0.075 0.925 13 C -0.131 4.131 14 N -0.516 5.516 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.018 4.018 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.172 4.172 23 C -0.167 4.167 24 C -0.069 4.069 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.190 0.810 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.172 1.194 -7.393 7.797 hybrid contribution -0.426 0.883 1.884 2.124 sum -2.598 2.077 -5.509 6.435 Atomic orbital electron populations 1.21310 0.92719 1.01250 1.01543 1.21588 0.94228 0.91711 1.06571 1.21283 0.99673 0.94068 1.01791 1.23210 1.01733 1.00539 0.95261 1.22491 0.99096 0.99503 0.93075 0.88161 1.21232 0.92230 0.93822 0.95764 1.60916 1.08765 1.31206 1.31497 1.18071 0.87941 0.89249 0.91868 0.94817 1.21750 1.27623 1.05590 1.02751 0.92455 1.24988 0.95678 0.94416 0.98013 1.69618 1.31805 1.13852 1.36310 0.86531 0.78138 0.79842 0.83528 1.19840 1.20860 1.20848 1.20178 0.92072 0.96025 0.93555 1.20835 0.94630 0.96794 1.03178 1.20734 0.98151 0.93377 1.04015 1.20752 0.94626 0.96963 1.04849 1.21089 0.93960 0.98247 1.03371 1.21330 1.01553 0.90340 0.93715 0.92459 0.92724 0.92805 0.92553 0.92964 0.92155 0.89260 0.89657 0.95333 0.93170 0.81023 0.92384 0.87963 0.88207 0.88401 0.88187 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.85 37.16 0.37 -1.01 16 2 C -0.14 -2.00 2.70 -154.51 -0.42 -2.42 16 3 C -0.11 -1.48 8.86 37.16 0.33 -1.15 16 4 C -0.17 -2.48 9.47 -26.73 -0.25 -2.73 16 5 C -0.12 -2.09 5.67 -90.62 -0.51 -2.61 16 6 H 0.10 1.80 8.13 -51.93 -0.42 1.38 16 7 C 0.10 1.97 4.84 -3.83 -0.02 1.95 16 8 N -0.69 -15.54 5.39 -109.19 -0.59 -16.13 16 9 C 0.24 5.73 2.50 -70.02 -0.18 5.56 16 10 H 0.03 0.80 7.75 -51.92 -0.40 0.40 16 11 C -0.54 -13.97 8.62 -34.44 -0.30 -14.27 16 12 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 13 C 0.07 1.84 5.05 -17.82 -0.09 1.75 16 14 N -0.88 -22.34 7.97 55.43 0.44 -21.90 16 15 Si 0.89 20.48 29.54 -169.99 -5.02 15.45 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.02 -0.41 4.79 -104.63 -0.50 -0.91 16 20 C -0.14 -2.98 9.70 -39.58 -0.38 -3.36 16 21 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 22 C -0.15 -3.03 10.05 -39.59 -0.40 -3.43 16 23 C -0.15 -3.13 10.05 -39.59 -0.40 -3.53 16 24 C -0.05 -1.19 7.67 -39.59 -0.30 -1.49 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 27 H 0.05 0.63 7.90 -51.92 -0.41 0.22 16 28 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 29 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 30 H 0.06 0.85 7.83 -51.93 -0.41 0.44 16 31 H 0.09 1.28 7.94 -51.93 -0.41 0.87 16 32 H 0.08 1.14 8.05 -51.93 -0.42 0.73 16 33 H 0.03 0.61 7.62 -51.93 -0.40 0.21 16 34 H 0.05 0.96 7.79 -51.93 -0.40 0.56 16 35 H 0.36 8.81 5.51 -39.29 -0.22 8.59 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.14 3.54 5.59 -52.49 -0.29 3.24 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -25.79 328.45 -10.34 -36.13 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.67 Total: 12.41 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -3.45 Total: -30.92 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.15 Total: -38.03 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -25.79 -10.34 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232913401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.350 kcal (2) G-P(sol) polarization free energy of solvation -25.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds