Wall clock time and date at job start Mon Mar 30 2020 06:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 115.55899 * 2 1 4 4 C 1.52997 * 117.50031 * 214.31219 * 2 1 3 5 5 C 1.52997 * 117.50322 * 145.68594 * 2 1 3 6 6 H 1.08998 * 117.51522 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.50273 * 214.98223 * 5 2 1 8 8 N 1.46894 * 109.47238 * 174.98808 * 7 5 2 9 9 C 1.46901 * 111.00398 * 180.02562 * 8 7 5 10 10 H 1.09007 * 109.46260 * 325.00022 * 9 8 7 11 11 C 1.50696 * 109.47253 * 84.99602 * 9 8 7 12 12 H 1.08002 * 120.00191 * 234.80212 * 11 9 8 13 13 C 1.37870 * 119.99983 * 54.79945 * 11 9 8 14 14 N 1.31519 * 120.00096 * 2.53069 * 13 11 9 15 15 Si 1.86806 * 120.00316 * 182.52800 * 13 11 9 16 16 H 1.48500 * 109.46697 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47236 * 120.00002 * 15 13 11 18 18 H 1.48491 * 109.47486 * 240.00376 * 15 13 11 19 19 C 1.50694 * 109.47367 * 204.99786 * 9 8 7 20 20 C 1.38243 * 119.99993 * 150.29452 * 19 9 8 21 21 C 1.38228 * 119.99883 * 180.34622 * 20 19 9 22 22 C 1.38233 * 120.00290 * 359.88898 * 21 20 19 23 23 C 1.38232 * 119.99743 * 0.08771 * 22 21 20 24 24 C 1.38230 * 120.00097 * 330.57409 * 19 9 8 25 25 H 1.08997 * 109.47197 * 274.30758 * 1 2 3 26 26 H 1.09002 * 109.47588 * 34.31116 * 1 2 3 27 27 H 1.09008 * 109.46783 * 154.30993 * 1 2 3 28 28 H 1.08998 * 109.47277 * 205.68732 * 3 2 1 29 29 H 1.09005 * 109.47227 * 325.68944 * 3 2 1 30 30 H 1.09005 * 109.46834 * 85.68649 * 3 2 1 31 31 H 1.09006 * 117.49835 * 145.01937 * 4 2 1 32 32 H 1.08998 * 117.52317 * 359.97438 * 4 2 1 33 33 H 1.08997 * 109.46762 * 54.98573 * 7 5 2 34 34 H 1.09006 * 109.46837 * 294.98801 * 7 5 2 35 35 H 1.00902 * 111.00010 * 303.95494 * 8 7 5 36 36 H 0.96998 * 119.99937 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.99543 * 0.27887 * 20 19 9 38 38 H 1.08004 * 119.99805 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00002 * 180.11209 * 22 21 20 40 40 H 1.08004 * 119.99612 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.00235 * 359.70110 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6116 -1.8588 1.2681 7 6 3.5490 -0.7758 1.4715 8 7 4.0097 -1.9374 2.2436 9 6 5.2703 -1.6421 2.9376 10 1 5.8792 -0.9821 2.3196 11 6 4.9739 -0.9673 4.2521 12 1 5.4252 -0.0138 4.4835 13 6 4.1266 -1.5672 5.1593 14 7 3.6162 -2.7511 4.8992 15 14 3.7034 -0.6985 6.7580 16 1 4.4012 0.6113 6.8093 17 1 2.2362 -0.4803 6.8295 18 1 4.1358 -1.5356 7.9057 19 6 6.0179 -2.9260 3.1894 20 6 7.3993 -2.9226 3.2417 21 6 8.0854 -4.1016 3.4656 22 6 7.3901 -5.2836 3.6394 23 6 6.0087 -5.2869 3.5876 24 6 5.3226 -4.1082 3.3623 25 1 -0.3633 0.0772 1.0247 26 1 -0.3634 0.8488 -0.5793 27 1 -0.3633 -0.9262 -0.4455 28 1 3.1823 1.3086 -0.4454 29 1 1.5811 2.0744 -0.5793 30 1 2.2771 1.7414 1.0248 31 1 3.1716 -0.8750 -1.2683 32 1 1.6116 -1.8589 -1.2681 33 1 3.3890 0.0671 2.1438 34 1 4.3023 -0.5108 0.7294 35 1 3.3018 -2.2427 2.8946 36 1 3.0198 -3.1730 5.5373 37 1 7.9425 -1.9990 3.1066 38 1 9.1646 -4.0988 3.5068 39 1 7.9261 -6.2044 3.8161 40 1 5.4655 -6.2104 3.7238 41 1 4.2434 -4.1108 3.3218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232913401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:31 Heat of formation + Delta-G solvation = 29.113613 kcal Electronic energy + Delta-G solvation = -19460.637070 eV Core-core repulsion = 16726.107954 eV Total energy + Delta-G solvation = -2734.529116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.01299 -39.45258 -36.90735 -33.80819 -32.05213 -31.29272 -30.02562 -28.60973 -28.24017 -25.98630 -24.07931 -22.89462 -21.78444 -21.50502 -19.52824 -18.44459 -17.44532 -16.89787 -16.09839 -15.81358 -15.61464 -15.36336 -15.10307 -14.70147 -14.22541 -14.09637 -13.86478 -13.66564 -13.36669 -13.25380 -13.06387 -12.94225 -12.81338 -12.72031 -12.56591 -12.25897 -12.14176 -11.85352 -11.72762 -11.45599 -11.24942 -10.67758 -10.65115 -10.30133 -9.41830 -9.10445 -8.79947 -7.95873 -6.32388 0.89253 1.03729 1.34182 1.38758 1.46742 2.37035 2.85876 3.08087 3.39884 3.66926 3.90595 4.03116 4.20083 4.30744 4.39786 4.41422 4.58829 4.61343 4.71689 4.79097 4.80651 4.89688 4.97123 4.99247 5.05970 5.08023 5.08392 5.13803 5.23173 5.24533 5.31054 5.41487 5.53332 5.54220 5.63907 5.71106 5.93004 6.07184 6.10514 6.38366 6.52047 6.61619 6.98285 7.21672 7.42897 8.83216 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.006905 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.793440 B = 4054.030166 C = 5104.666724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.157 4.157 5 C -0.151 4.151 6 H 0.086 0.914 7 C 0.108 3.892 8 N -0.687 5.687 9 C 0.238 3.762 10 H 0.023 0.977 11 C -0.559 4.559 12 H 0.042 0.958 13 C 0.039 3.961 14 N -0.882 5.882 15 Si 0.943 3.057 16 H -0.277 1.277 17 H -0.277 1.277 18 H -0.283 1.283 19 C -0.044 4.044 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.071 4.071 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.006 0.994 34 H 0.050 0.950 35 H 0.355 0.645 36 H 0.266 0.734 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 1.039 -7.468 7.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C -0.169 4.169 4 C -0.194 4.194 5 C -0.170 4.170 6 H 0.104 0.896 7 C -0.022 4.022 8 N -0.322 5.322 9 C 0.129 3.871 10 H 0.041 0.959 11 C -0.598 4.598 12 H 0.060 0.940 13 C -0.163 4.163 14 N -0.519 5.519 15 Si 0.770 3.230 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.209 1.209 19 C -0.045 4.045 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.167 4.167 23 C -0.173 4.173 24 C -0.089 4.089 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.178 0.822 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.045 0.611 -7.925 8.207 hybrid contribution -0.414 1.033 2.016 2.303 sum -2.458 1.644 -5.909 6.608 Atomic orbital electron populations 1.21343 0.90979 1.02702 1.01723 1.21760 0.95508 0.91446 1.04014 1.21317 1.00115 0.94071 1.01424 1.23269 1.02163 1.00864 0.93081 1.22302 0.98203 1.01830 0.94665 0.89579 1.21165 0.93775 0.92169 0.95088 1.60941 1.08054 1.32302 1.30916 1.18016 0.88485 0.89593 0.91056 0.95911 1.21850 1.28499 1.05435 1.04058 0.94009 1.25488 0.95608 0.95054 1.00125 1.69744 1.31472 1.14100 1.36626 0.85743 0.77981 0.78689 0.80605 1.20231 1.20252 1.20921 1.20261 0.93132 0.95908 0.95243 1.21062 0.94135 0.98238 1.03677 1.21138 0.99988 0.92527 1.02231 1.21179 0.94118 0.98412 1.02970 1.21370 0.95077 0.98139 1.02738 1.21230 1.00849 0.91403 0.95462 0.93046 0.90543 0.91994 0.92753 0.90402 0.93486 0.89023 0.88062 0.97618 0.93136 0.82158 0.92398 0.87382 0.84714 0.84623 0.86121 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 9.85 71.98 0.71 -1.81 16 2 C -0.13 -3.48 2.70 -52.18 -0.14 -3.62 16 3 C -0.11 -2.87 8.86 71.98 0.64 -2.24 16 4 C -0.16 -4.40 9.47 30.59 0.29 -4.11 16 5 C -0.15 -5.23 5.67 -10.79 -0.06 -5.30 16 6 H 0.09 3.21 8.13 -2.39 -0.02 3.19 16 7 C 0.11 4.45 4.84 86.30 0.42 4.87 16 8 N -0.69 -32.49 5.39 -499.38 -2.69 -35.18 16 9 C 0.24 11.96 2.50 43.42 0.11 12.07 16 10 H 0.02 1.14 7.75 -2.38 -0.02 1.13 16 11 C -0.56 -30.14 8.62 25.60 0.22 -29.92 16 12 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 13 C 0.04 2.06 5.05 84.65 0.43 2.49 16 14 N -0.88 -45.86 7.97 21.45 0.17 -45.69 16 15 Si 0.94 42.65 29.54 68.60 2.03 44.68 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 C -0.04 -2.15 4.79 -19.87 -0.10 -2.25 16 20 C -0.15 -6.65 9.70 22.27 0.22 -6.43 16 21 C -0.14 -5.27 10.05 22.27 0.22 -5.04 16 22 C -0.15 -5.42 10.05 22.27 0.22 -5.20 16 23 C -0.16 -6.32 10.05 22.27 0.22 -6.10 16 24 C -0.07 -3.35 7.67 22.27 0.17 -3.18 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.42 7.92 -2.39 -0.02 1.40 16 27 H 0.06 1.31 7.90 -2.38 -0.02 1.29 16 28 H 0.05 1.39 7.90 -2.39 -0.02 1.37 16 29 H 0.08 1.59 7.92 -2.38 -0.02 1.57 16 30 H 0.05 1.32 7.83 -2.38 -0.02 1.31 16 31 H 0.09 2.53 7.94 -2.38 -0.02 2.51 16 32 H 0.10 2.52 8.05 -2.39 -0.02 2.50 16 33 H 0.01 0.26 7.62 -2.39 -0.02 0.24 16 34 H 0.05 2.02 7.79 -2.38 -0.02 2.00 16 35 H 0.35 17.96 5.51 -89.69 -0.49 17.46 16 36 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 37 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 41 H 0.12 6.32 5.59 -2.91 -0.02 6.30 16 Total: -1.00 -56.09 328.45 3.57 -52.52 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: 0.50 Total: 39.44 kcal Atomic # 6 Polarization: -59.33 SS G_CDS: 3.57 Total: -55.76 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.52 Total: -80.88 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -56.09 3.57 -52.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232913401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.631 kcal (2) G-P(sol) polarization free energy of solvation -56.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds