Wall clock time and date at job start Mon Mar 30 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 115.55411 * 2 1 4 4 C 1.53001 * 117.49554 * 214.28771 * 2 1 3 5 5 C 1.52995 * 59.99992 * 252.51726 * 4 2 1 6 6 H 1.09003 * 117.51680 * 252.51629 * 5 4 2 7 7 C 1.52998 * 117.49948 * 107.49655 * 5 4 2 8 8 N 1.46898 * 109.47693 * 116.37197 * 7 5 4 9 9 C 1.46900 * 111.00486 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.46635 * 324.28869 * 9 8 7 11 11 C 1.50701 * 109.46965 * 84.28664 * 9 8 7 12 12 H 1.08002 * 119.99588 * 60.77730 * 11 9 8 13 13 C 1.37877 * 119.99951 * 240.77090 * 11 9 8 14 14 N 1.31513 * 119.99941 * 174.87312 * 13 11 9 15 15 Si 1.86803 * 119.99906 * 354.87776 * 13 11 9 16 16 H 1.48495 * 109.47224 * 84.74780 * 15 13 11 17 17 H 1.48504 * 109.46726 * 204.74975 * 15 13 11 18 18 H 1.48503 * 109.47060 * 324.74706 * 15 13 11 19 19 C 1.50698 * 109.47257 * 204.28894 * 9 8 7 20 20 C 1.38234 * 120.00291 * 133.71816 * 19 9 8 21 21 C 1.38233 * 120.00469 * 179.97438 * 20 19 9 22 22 C 1.38233 * 119.99670 * 0.02562 * 21 20 19 23 23 C 1.38236 * 120.00202 * 0.24974 * 22 21 20 24 24 C 1.38233 * 119.99621 * 359.49471 * 23 22 21 25 25 H 1.08999 * 109.47547 * 274.33394 * 1 2 3 26 26 H 1.09005 * 109.47047 * 34.33028 * 1 2 3 27 27 H 1.09002 * 109.47396 * 154.32675 * 1 2 3 28 28 H 1.08992 * 109.47618 * 205.66672 * 3 2 1 29 29 H 1.08997 * 109.47101 * 325.67150 * 3 2 1 30 30 H 1.09008 * 109.47080 * 85.66954 * 3 2 1 31 31 H 1.09000 * 117.49656 * 145.02111 * 4 2 1 32 32 H 1.08997 * 117.50095 * 0.02562 * 4 2 1 33 33 H 1.09003 * 109.46972 * 356.37675 * 7 5 4 34 34 H 1.09001 * 109.47165 * 236.37681 * 7 5 4 35 35 H 1.00901 * 111.00030 * 303.96052 * 8 7 5 36 36 H 0.97000 * 119.99742 * 180.02562 * 14 13 11 37 37 H 1.08009 * 119.99751 * 359.97438 * 20 19 9 38 38 H 1.07998 * 120.00163 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99896 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00041 * 179.72773 * 23 22 21 41 41 H 1.08010 * 119.99838 * 180.24771 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2363 -1.1208 0.7654 6 1 3.1712 -0.8748 1.2690 7 6 1.3586 -2.1557 1.4722 8 7 2.2078 -3.0726 2.2444 9 6 1.3974 -4.0828 2.9377 10 1 0.4606 -3.6335 3.2671 11 6 1.1042 -5.2233 1.9973 12 1 1.9157 -5.7986 1.5766 13 6 -0.2000 -5.5324 1.6741 14 7 -0.4530 -6.4603 0.7771 15 14 -1.6077 -4.6331 2.5102 16 1 -1.8764 -3.3600 1.7945 17 1 -2.8248 -5.4835 2.4816 18 1 -1.2410 -4.3409 3.9193 19 6 2.1546 -4.5998 4.1337 20 6 1.5185 -4.7207 5.3550 21 6 2.2128 -5.1954 6.4520 22 6 3.5434 -5.5487 6.3278 23 6 4.1811 -5.4225 5.1078 24 6 3.4853 -4.9528 4.0096 25 1 -0.3634 0.0777 1.0247 26 1 -0.3633 0.8487 -0.5796 27 1 -0.3634 -0.9262 -0.4452 28 1 3.1823 1.3086 -0.4451 29 1 1.5810 2.0741 -0.5795 30 1 2.2767 1.7416 1.0248 31 1 3.1714 -0.8757 -1.2680 32 1 1.6111 -1.8588 -1.2679 33 1 0.7945 -2.7210 0.7303 34 1 0.6674 -1.6475 2.1445 35 1 2.9003 -3.5080 1.6537 36 1 -1.3706 -6.6775 0.5495 37 1 0.4789 -4.4442 5.4522 38 1 1.7159 -5.2894 7.4063 39 1 4.0860 -5.9193 7.1849 40 1 5.2219 -5.6944 5.0118 41 1 3.9825 -4.8579 3.0554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232956790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:36 Heat of formation + Delta-G solvation = 34.530507 kcal Electronic energy + Delta-G solvation = -19278.116226 eV Core-core repulsion = 16543.822004 eV Total energy + Delta-G solvation = -2734.294221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.74532 -38.30076 -35.29710 -32.30299 -30.87840 -30.16006 -28.93013 -27.52544 -26.84896 -24.47785 -22.53970 -21.77506 -20.48410 -19.75792 -18.40803 -17.19144 -16.18666 -15.20475 -14.89771 -14.61121 -14.20643 -13.95188 -13.62898 -13.33708 -13.08346 -12.86812 -12.72180 -12.41426 -12.20946 -12.06497 -11.94601 -11.77310 -11.55953 -11.19935 -11.01561 -10.99099 -10.70363 -10.48088 -10.17303 -9.88139 -9.49343 -9.40275 -9.22982 -8.74205 -8.19482 -7.91364 -7.30145 -6.26137 -4.27831 2.13674 2.20291 3.15123 3.23884 3.24869 3.98122 4.24250 4.55608 4.82323 5.00227 5.09893 5.15763 5.23989 5.49545 5.55263 5.60394 5.73203 5.74419 5.77887 5.90348 5.99232 6.06305 6.11113 6.11415 6.13786 6.23583 6.27124 6.30307 6.37771 6.45335 6.52545 6.58151 6.76075 6.82232 6.86705 7.16733 7.25720 7.39779 7.56080 7.78847 8.00395 8.26408 8.51793 8.79267 9.36040 10.86344 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.007076 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.204168 B = 3956.227178 C = 5029.142177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.135 4.135 3 C -0.110 4.110 4 C -0.175 4.175 5 C -0.131 4.131 6 H 0.106 0.894 7 C 0.095 3.905 8 N -0.684 5.684 9 C 0.204 3.796 10 H 0.050 0.950 11 C -0.534 4.534 12 H 0.078 0.922 13 C 0.080 3.920 14 N -0.888 5.888 15 Si 0.869 3.131 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.015 4.015 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.151 4.151 23 C -0.126 4.126 24 C -0.104 4.104 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.334 0.666 36 H 0.266 0.734 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 10.014 2.608 11.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.135 4.135 3 C -0.167 4.167 4 C -0.212 4.212 5 C -0.150 4.150 6 H 0.124 0.876 7 C -0.035 4.035 8 N -0.314 5.314 9 C 0.096 3.904 10 H 0.068 0.932 11 C -0.573 4.573 12 H 0.096 0.904 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.696 3.304 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.016 4.016 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.169 4.169 23 C -0.144 4.144 24 C -0.122 4.122 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.199 10.332 3.049 11.562 hybrid contribution -1.158 -0.428 -0.384 1.293 sum 3.041 9.904 2.665 10.698 Atomic orbital electron populations 1.21320 0.92456 1.01710 1.01706 1.21547 0.94727 0.91154 1.06114 1.21307 0.99618 0.94291 1.01509 1.23308 1.01821 1.01025 0.95006 1.22530 1.01031 0.98466 0.92931 0.87569 1.21290 0.94172 0.92360 0.95637 1.61053 1.16654 1.21433 1.32243 1.18625 0.91432 0.90408 0.89906 0.93244 1.21515 0.94018 1.16180 1.25543 0.90431 1.25097 0.98640 0.94565 0.94151 1.69896 1.20394 1.31134 1.30993 0.86999 0.82231 0.80096 0.81036 1.19769 1.21212 1.18776 1.20264 0.93459 0.93718 0.94141 1.20997 0.99538 1.01824 0.92843 1.20929 0.94733 1.00461 0.98021 1.20839 0.95149 1.03628 0.97311 1.21017 0.99176 1.00733 0.93452 1.20836 0.94405 0.99025 0.97931 0.92358 0.92718 0.92256 0.92751 0.92610 0.92449 0.89414 0.88834 0.94316 0.92390 0.84883 0.92383 0.87188 0.87318 0.87437 0.87269 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.86 37.16 0.33 -1.25 16 2 C -0.13 -1.85 2.70 -154.51 -0.42 -2.27 16 3 C -0.11 -1.25 9.85 37.15 0.37 -0.88 16 4 C -0.17 -2.53 9.47 -26.73 -0.25 -2.78 16 5 C -0.13 -2.06 5.67 -90.62 -0.51 -2.57 16 6 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 7 C 0.10 1.81 4.84 -3.83 -0.02 1.79 16 8 N -0.68 -13.90 5.85 -109.19 -0.64 -14.54 16 9 C 0.20 4.67 2.15 -70.02 -0.15 4.52 16 10 H 0.05 1.17 4.15 -51.93 -0.22 0.96 16 11 C -0.53 -14.21 8.55 -34.44 -0.29 -14.51 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 15 Si 0.87 20.80 27.02 -169.99 -4.59 16.21 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.04 6.34 56.52 0.36 -5.68 16 19 C -0.01 -0.32 4.93 -104.63 -0.52 -0.83 16 20 C -0.13 -2.71 9.67 -39.58 -0.38 -3.09 16 21 C -0.12 -2.16 10.05 -39.59 -0.40 -2.56 16 22 C -0.15 -2.51 10.05 -39.58 -0.40 -2.90 16 23 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 24 C -0.10 -2.04 9.27 -39.58 -0.37 -2.41 16 25 H 0.06 0.81 7.83 -51.93 -0.41 0.40 16 26 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 27 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 28 H 0.05 0.58 7.90 -51.93 -0.41 0.16 16 29 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.09 1.46 7.94 -51.93 -0.41 1.05 16 33 H 0.04 0.83 7.71 -51.93 -0.40 0.43 16 34 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 35 H 0.33 6.75 7.90 -39.29 -0.31 6.44 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.11 2.20 7.64 -52.48 -0.40 1.80 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 2.19 7.45 -52.48 -0.39 1.80 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -28.26 333.76 -9.65 -37.91 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.71 Total: 10.97 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -3.51 Total: -30.22 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.13 Total: -39.90 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.59 Total: 16.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.26 -9.65 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232956790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.440 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds