Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 115.55411 * 2 1 4 4 C 1.53001 * 117.49554 * 214.28771 * 2 1 3 5 5 C 1.52995 * 59.99992 * 252.51726 * 4 2 1 6 6 H 1.09003 * 117.51680 * 252.51629 * 5 4 2 7 7 C 1.52998 * 117.49948 * 107.49655 * 5 4 2 8 8 N 1.46898 * 109.47693 * 116.37197 * 7 5 4 9 9 C 1.46900 * 111.00486 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.46635 * 324.28869 * 9 8 7 11 11 C 1.50701 * 109.46965 * 84.28664 * 9 8 7 12 12 H 1.08002 * 119.99588 * 60.77730 * 11 9 8 13 13 C 1.37877 * 119.99951 * 240.77090 * 11 9 8 14 14 N 1.31513 * 119.99941 * 174.87312 * 13 11 9 15 15 Si 1.86803 * 119.99906 * 354.87776 * 13 11 9 16 16 H 1.48495 * 109.47224 * 84.74780 * 15 13 11 17 17 H 1.48504 * 109.46726 * 204.74975 * 15 13 11 18 18 H 1.48503 * 109.47060 * 324.74706 * 15 13 11 19 19 C 1.50698 * 109.47257 * 204.28894 * 9 8 7 20 20 C 1.38234 * 120.00291 * 133.71816 * 19 9 8 21 21 C 1.38233 * 120.00469 * 179.97438 * 20 19 9 22 22 C 1.38233 * 119.99670 * 0.02562 * 21 20 19 23 23 C 1.38236 * 120.00202 * 0.24974 * 22 21 20 24 24 C 1.38233 * 119.99621 * 359.49471 * 23 22 21 25 25 H 1.08999 * 109.47547 * 274.33394 * 1 2 3 26 26 H 1.09005 * 109.47047 * 34.33028 * 1 2 3 27 27 H 1.09002 * 109.47396 * 154.32675 * 1 2 3 28 28 H 1.08992 * 109.47618 * 205.66672 * 3 2 1 29 29 H 1.08997 * 109.47101 * 325.67150 * 3 2 1 30 30 H 1.09008 * 109.47080 * 85.66954 * 3 2 1 31 31 H 1.09000 * 117.49656 * 145.02111 * 4 2 1 32 32 H 1.08997 * 117.50095 * 0.02562 * 4 2 1 33 33 H 1.09003 * 109.46972 * 356.37675 * 7 5 4 34 34 H 1.09001 * 109.47165 * 236.37681 * 7 5 4 35 35 H 1.00901 * 111.00030 * 303.96052 * 8 7 5 36 36 H 0.97000 * 119.99742 * 180.02562 * 14 13 11 37 37 H 1.08009 * 119.99751 * 359.97438 * 20 19 9 38 38 H 1.07998 * 120.00163 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99896 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00041 * 179.72773 * 23 22 21 41 41 H 1.08010 * 119.99838 * 180.24771 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2363 -1.1208 0.7654 6 1 3.1712 -0.8748 1.2690 7 6 1.3586 -2.1557 1.4722 8 7 2.2078 -3.0726 2.2444 9 6 1.3974 -4.0828 2.9377 10 1 0.4606 -3.6335 3.2671 11 6 1.1042 -5.2233 1.9973 12 1 1.9157 -5.7986 1.5766 13 6 -0.2000 -5.5324 1.6741 14 7 -0.4530 -6.4603 0.7771 15 14 -1.6077 -4.6331 2.5102 16 1 -1.8764 -3.3600 1.7945 17 1 -2.8248 -5.4835 2.4816 18 1 -1.2410 -4.3409 3.9193 19 6 2.1546 -4.5998 4.1337 20 6 1.5185 -4.7207 5.3550 21 6 2.2128 -5.1954 6.4520 22 6 3.5434 -5.5487 6.3278 23 6 4.1811 -5.4225 5.1078 24 6 3.4853 -4.9528 4.0096 25 1 -0.3634 0.0777 1.0247 26 1 -0.3633 0.8487 -0.5796 27 1 -0.3634 -0.9262 -0.4452 28 1 3.1823 1.3086 -0.4451 29 1 1.5810 2.0741 -0.5795 30 1 2.2767 1.7416 1.0248 31 1 3.1714 -0.8757 -1.2680 32 1 1.6111 -1.8588 -1.2679 33 1 0.7945 -2.7210 0.7303 34 1 0.6674 -1.6475 2.1445 35 1 2.9003 -3.5080 1.6537 36 1 -1.3706 -6.6775 0.5495 37 1 0.4789 -4.4442 5.4522 38 1 1.7159 -5.2894 7.4063 39 1 4.0860 -5.9193 7.1849 40 1 5.2219 -5.6944 5.0118 41 1 3.9825 -4.8579 3.0554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232956790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = 19.258457 kcal Electronic energy + Delta-G solvation = -19278.778471 eV Core-core repulsion = 16543.822004 eV Total energy + Delta-G solvation = -2734.956467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19961 -39.57818 -36.95551 -34.34282 -32.38466 -31.59281 -30.14311 -28.80245 -28.35875 -26.13050 -24.18006 -23.21501 -21.79924 -21.40100 -19.68365 -19.16270 -17.63102 -16.81477 -16.60515 -16.01287 -15.72130 -15.21200 -14.97372 -14.84590 -14.70202 -14.36163 -14.17741 -13.91630 -13.71468 -13.41787 -13.33342 -13.05772 -12.88259 -12.81949 -12.69532 -12.23901 -12.12064 -11.94146 -11.85085 -11.65883 -11.30783 -10.85954 -10.69886 -10.39900 -9.63859 -9.44814 -9.03738 -8.41232 -6.45531 0.68236 0.74413 1.21959 1.24466 1.32805 2.21098 2.77630 2.91733 3.16730 3.47629 3.85224 3.90435 4.07176 4.15028 4.22252 4.29439 4.38625 4.48622 4.54274 4.57914 4.68144 4.75994 4.82530 4.91614 4.91685 4.93630 4.98364 5.05084 5.06397 5.11549 5.26826 5.29247 5.36765 5.38803 5.42110 5.51162 5.75161 5.79564 5.97273 6.04684 6.31618 6.41269 6.60830 6.73664 7.21816 8.75012 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.007076 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.204168 B = 3956.227178 C = 5029.142177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C -0.107 4.107 4 C -0.175 4.175 5 C -0.145 4.145 6 H 0.114 0.886 7 C 0.101 3.899 8 N -0.673 5.673 9 C 0.212 3.788 10 H 0.041 0.959 11 C -0.528 4.528 12 H 0.037 0.963 13 C 0.026 3.974 14 N -0.937 5.937 15 Si 0.923 3.077 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.247 1.247 19 C -0.049 4.049 20 C -0.155 4.155 21 C -0.121 4.121 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.121 4.121 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.005 0.995 34 H 0.054 0.946 35 H 0.333 0.667 36 H 0.267 0.733 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 11.790 4.598 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.120 4.120 3 C -0.164 4.164 4 C -0.212 4.212 5 C -0.163 4.163 6 H 0.132 0.868 7 C -0.029 4.029 8 N -0.301 5.301 9 C 0.103 3.897 10 H 0.059 0.941 11 C -0.567 4.567 12 H 0.055 0.945 13 C -0.173 4.173 14 N -0.576 5.576 15 Si 0.748 3.252 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.171 1.171 19 C -0.050 4.050 20 C -0.173 4.173 21 C -0.139 4.139 22 C -0.160 4.160 23 C -0.142 4.142 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.210 12.127 5.051 14.132 hybrid contribution -1.341 -1.022 -0.972 1.946 sum 3.868 11.105 4.079 12.447 Atomic orbital electron populations 1.21369 0.92650 1.01757 1.01784 1.21716 0.94720 0.92049 1.03552 1.21328 1.00190 0.92526 1.02340 1.23324 1.02671 1.01230 0.93949 1.22383 1.01238 0.99181 0.93510 0.86818 1.21240 0.94426 0.92511 0.94699 1.61066 1.16205 1.20567 1.32287 1.18465 0.91885 0.89248 0.90082 0.94091 1.21673 0.92820 1.16327 1.25864 0.94455 1.25847 1.01263 0.95455 0.94767 1.70033 1.20908 1.33523 1.33144 0.86112 0.79040 0.79195 0.80899 1.18808 1.21012 1.17117 1.20227 0.94577 0.95930 0.94251 1.21139 0.99710 1.03045 0.93453 1.21310 0.95277 0.98966 0.98361 1.21337 0.94864 1.01614 0.98160 1.21392 1.00593 0.99319 0.92878 1.20932 0.94088 1.00013 0.98909 0.92663 0.90179 0.94330 0.91735 0.90930 0.91912 0.87307 0.90796 0.97630 0.92751 0.85063 0.92411 0.87672 0.84078 0.83402 0.84151 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 8.86 71.98 0.64 -2.51 16 2 C -0.12 -3.13 2.70 -52.18 -0.14 -3.27 16 3 C -0.11 -2.10 9.85 71.98 0.71 -1.39 16 4 C -0.17 -4.99 9.47 30.59 0.29 -4.70 16 5 C -0.14 -4.51 5.67 -10.80 -0.06 -4.57 16 6 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 7 C 0.10 3.96 4.84 86.30 0.42 4.38 16 8 N -0.67 -28.18 5.85 -499.37 -2.92 -31.10 16 9 C 0.21 9.99 2.15 43.42 0.09 10.08 16 10 H 0.04 1.98 4.15 -2.39 -0.01 1.97 16 11 C -0.53 -29.56 8.55 25.60 0.22 -29.34 16 12 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 13 C 0.03 1.51 5.47 84.65 0.46 1.98 16 14 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 15 Si 0.92 44.01 27.02 68.60 1.85 45.86 16 16 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.25 -11.06 6.34 99.48 0.63 -10.42 16 19 C -0.05 -2.13 4.93 -19.87 -0.10 -2.22 16 20 C -0.15 -6.14 9.67 22.27 0.22 -5.93 16 21 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 22 C -0.14 -4.15 10.05 22.27 0.22 -3.92 16 23 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 24 C -0.12 -4.75 9.27 22.27 0.21 -4.54 16 25 H 0.05 1.49 7.83 -2.39 -0.02 1.47 16 26 H 0.08 1.70 7.92 -2.38 -0.02 1.69 16 27 H 0.04 1.16 7.90 -2.39 -0.02 1.15 16 28 H 0.06 1.15 7.90 -2.39 -0.02 1.14 16 29 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.11 2.63 8.05 -2.39 -0.02 2.61 16 32 H 0.07 2.40 7.94 -2.39 -0.02 2.38 16 33 H 0.01 0.25 7.71 -2.39 -0.02 0.23 16 34 H 0.05 2.14 7.68 -2.39 -0.02 2.12 16 35 H 0.33 14.08 7.90 -89.69 -0.71 13.37 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.11 4.15 7.64 -2.91 -0.02 4.13 16 38 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.11 4.25 7.45 -2.91 -0.02 4.23 16 Total: -1.00 -64.16 333.76 3.06 -61.10 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.21 Total: 35.05 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 3.62 Total: -53.38 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.62 Total: -88.64 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.85 Total: 45.86 kcal Total: -64.16 3.06 -61.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232956790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.360 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds