Wall clock time and date at job start Mon Mar 30 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 115.55149 * 2 1 4 4 C 1.52998 * 117.49435 * 214.29167 * 2 1 3 5 5 C 1.52993 * 60.00215 * 252.50925 * 4 2 1 6 6 H 1.08993 * 117.52088 * 252.52076 * 5 4 2 7 7 C 1.53007 * 117.49614 * 107.49044 * 5 4 2 8 8 N 1.46892 * 109.47145 * 116.38089 * 7 5 4 9 9 C 1.46899 * 111.00169 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.46914 * 34.99968 * 9 8 7 11 11 C 1.50699 * 109.47473 * 274.99866 * 9 8 7 12 12 H 1.07996 * 120.00190 * 116.47028 * 11 9 8 13 13 C 1.37875 * 119.99876 * 296.47879 * 11 9 8 14 14 N 1.31511 * 120.00228 * 9.44148 * 13 11 9 15 15 Si 1.86801 * 119.99820 * 189.44171 * 13 11 9 16 16 H 1.48498 * 109.47031 * 89.99941 * 15 13 11 17 17 H 1.48505 * 109.47036 * 209.99854 * 15 13 11 18 18 H 1.48495 * 109.47238 * 329.99642 * 15 13 11 19 19 C 1.50700 * 109.47057 * 154.99803 * 9 8 7 20 20 C 1.38230 * 120.00458 * 28.28321 * 19 9 8 21 21 C 1.38232 * 120.00401 * 179.80603 * 20 19 9 22 22 C 1.38240 * 120.00043 * 0.42356 * 21 20 19 23 23 C 1.38231 * 119.99787 * 359.80780 * 22 21 20 24 24 C 1.38237 * 119.99820 * 208.55601 * 19 9 8 25 25 H 1.09005 * 109.46750 * 274.32937 * 1 2 3 26 26 H 1.09002 * 109.47304 * 34.32545 * 1 2 3 27 27 H 1.08998 * 109.47907 * 154.33035 * 1 2 3 28 28 H 1.09000 * 109.46779 * 205.67224 * 3 2 1 29 29 H 1.08996 * 109.47140 * 325.67008 * 3 2 1 30 30 H 1.09004 * 109.47221 * 85.67444 * 3 2 1 31 31 H 1.09001 * 117.49656 * 145.01840 * 4 2 1 32 32 H 1.09003 * 117.49974 * 0.02562 * 4 2 1 33 33 H 1.08993 * 109.47212 * 356.37877 * 7 5 4 34 34 H 1.09001 * 109.46846 * 236.37713 * 7 5 4 35 35 H 1.00907 * 111.00411 * 56.04160 * 8 7 5 36 36 H 0.97004 * 120.00192 * 180.02562 * 14 13 11 37 37 H 1.08007 * 119.99717 * 359.97438 * 20 19 9 38 38 H 1.08008 * 120.00003 * 180.20574 * 21 20 19 39 39 H 1.07995 * 119.99912 * 179.78455 * 22 21 20 40 40 H 1.07997 * 119.99944 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00132 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2363 -1.1213 -0.7646 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8748 1.2688 7 6 1.3588 -2.1558 1.4721 8 7 2.2080 -3.0725 2.2442 9 6 1.3976 -4.0820 2.9385 10 1 0.5395 -4.3467 2.3208 11 6 0.9171 -3.5233 4.2530 12 1 -0.1400 -3.3882 4.4283 13 6 1.8270 -3.1845 5.2320 14 7 3.1132 -3.1715 4.9581 15 14 1.2327 -2.7440 6.9473 16 1 1.1694 -3.9721 7.7797 17 1 2.1749 -1.7759 7.5641 18 1 -0.1183 -2.1338 6.8616 19 6 2.2333 -5.3106 3.1903 20 6 3.6028 -5.1964 3.3395 21 6 4.3688 -6.3228 3.5744 22 6 3.7664 -7.5647 3.6515 23 6 2.3975 -7.6795 3.4977 24 6 1.6309 -6.5525 3.2666 25 1 -0.3633 0.0776 1.0248 26 1 -0.3634 0.8487 -0.5795 27 1 -0.3635 -0.9262 -0.4451 28 1 3.1822 1.3086 -0.4452 29 1 1.5810 2.0742 -0.5795 30 1 2.2767 1.7416 1.0248 31 1 3.1714 -0.8756 -1.2681 32 1 1.6110 -1.8587 -1.2680 33 1 0.7946 -2.7210 0.7304 34 1 0.6676 -1.6476 2.1445 35 1 2.7890 -2.5656 2.8951 36 1 3.7534 -2.9335 5.6469 37 1 4.0740 -4.2267 3.2751 38 1 5.4385 -6.2331 3.6942 39 1 4.3653 -8.4451 3.8316 40 1 1.9269 -8.6497 3.5575 41 1 0.5614 -6.6422 3.1461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232961205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:38 Heat of formation + Delta-G solvation = 39.958641 kcal Electronic energy + Delta-G solvation = -19447.754448 eV Core-core repulsion = 16713.695608 eV Total energy + Delta-G solvation = -2734.058840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.50182 -38.01646 -35.12240 -32.00776 -30.38449 -29.65152 -28.74567 -27.43009 -26.57025 -24.31510 -22.31873 -21.28264 -20.39660 -19.78775 -18.27369 -16.53576 -15.79724 -15.08252 -14.67339 -14.33396 -13.97188 -13.75402 -13.64167 -13.41258 -12.57248 -12.51060 -12.39109 -12.22463 -12.03288 -11.75563 -11.63388 -11.55536 -11.21183 -11.01974 -10.98240 -10.73342 -10.54737 -10.30322 -9.99398 -9.69064 -9.49631 -9.30336 -9.14142 -8.67672 -7.75248 -7.38135 -6.96609 -6.05447 -4.28841 2.57052 2.68746 3.22446 3.29857 3.32196 4.10220 4.31079 4.92169 5.05880 5.09013 5.13427 5.28174 5.33254 5.78059 5.81223 5.86831 5.89495 5.99925 6.01954 6.07535 6.11020 6.14446 6.22359 6.26819 6.36006 6.39317 6.49651 6.57903 6.69108 6.78196 6.86498 6.92758 6.96878 7.20128 7.34805 7.58583 7.66548 7.83101 8.02415 8.09366 8.29363 8.48059 8.85330 9.09650 9.43353 10.80993 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.006740 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.502123 B = 4153.579113 C = 5155.904922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.141 4.141 3 C -0.111 4.111 4 C -0.171 4.171 5 C -0.123 4.123 6 H 0.101 0.899 7 C 0.100 3.900 8 N -0.688 5.688 9 C 0.238 3.762 10 H 0.034 0.966 11 C -0.544 4.544 12 H 0.056 0.944 13 C 0.076 3.924 14 N -0.873 5.873 15 Si 0.889 3.111 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.018 4.018 20 C -0.047 4.047 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.134 4.134 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.363 0.637 36 H 0.266 0.734 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 2.747 -7.006 7.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C -0.168 4.168 4 C -0.208 4.208 5 C -0.141 4.141 6 H 0.119 0.881 7 C -0.030 4.030 8 N -0.323 5.323 9 C 0.130 3.870 10 H 0.052 0.948 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.128 4.128 14 N -0.510 5.510 15 Si 0.717 3.283 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.019 4.019 20 C -0.066 4.066 21 C -0.168 4.168 22 C -0.171 4.171 23 C -0.164 4.164 24 C -0.152 4.152 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.187 0.813 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.069 2.402 -7.450 7.828 hybrid contribution -0.624 0.576 1.964 2.140 sum -0.693 2.978 -5.485 6.280 Atomic orbital electron populations 1.21281 0.92516 1.01228 1.01786 1.21588 0.94704 0.91229 1.06591 1.21309 0.99566 0.94392 1.01550 1.23208 1.01534 1.00739 0.95277 1.22495 1.00711 0.97877 0.93045 0.88133 1.21221 0.93958 0.92100 0.95723 1.60916 1.22954 1.16986 1.31480 1.18063 0.89617 0.87522 0.91812 0.94818 1.21647 0.93506 1.42644 1.00513 0.92527 1.24955 0.94810 0.94350 0.98639 1.69666 1.00814 1.46774 1.33719 0.86639 0.78690 0.78268 0.84725 1.20511 1.21154 1.20003 1.20107 0.94229 0.93766 0.93769 1.21255 0.93621 0.97954 0.93737 1.21078 0.98797 0.93405 1.03508 1.20752 0.94744 0.96822 1.04753 1.20736 0.94106 0.97438 1.04124 1.20839 0.98663 0.92798 1.02935 0.92158 0.92971 0.92572 0.92809 0.92737 0.92441 0.89665 0.89274 0.93189 0.95347 0.81329 0.92330 0.84074 0.88184 0.88399 0.88194 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 8.86 37.16 0.33 -1.14 16 2 C -0.14 -1.99 2.70 -154.51 -0.42 -2.41 16 3 C -0.11 -1.36 9.85 37.16 0.37 -1.00 16 4 C -0.17 -2.47 9.47 -26.74 -0.25 -2.72 16 5 C -0.12 -2.07 5.67 -90.62 -0.51 -2.58 16 6 H 0.10 1.79 8.13 -51.93 -0.42 1.37 16 7 C 0.10 1.96 4.84 -3.82 -0.02 1.94 16 8 N -0.69 -15.47 5.35 -109.19 -0.58 -16.06 16 9 C 0.24 5.74 2.50 -70.02 -0.17 5.56 16 10 H 0.03 0.80 7.75 -51.93 -0.40 0.40 16 11 C -0.54 -14.12 8.61 -34.44 -0.30 -14.42 16 12 H 0.06 1.49 7.83 -52.49 -0.41 1.08 16 13 C 0.08 1.97 5.04 -17.82 -0.09 1.88 16 14 N -0.87 -22.24 8.09 55.43 0.45 -21.80 16 15 Si 0.89 20.58 29.55 -169.99 -5.02 15.56 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 C -0.02 -0.42 4.66 -104.63 -0.49 -0.91 16 20 C -0.05 -1.09 7.48 -39.59 -0.30 -1.39 16 21 C -0.15 -3.15 10.05 -39.58 -0.40 -3.54 16 22 C -0.15 -3.01 10.05 -39.58 -0.40 -3.40 16 23 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 24 C -0.13 -2.94 9.71 -39.58 -0.38 -3.32 16 25 H 0.06 0.84 7.83 -51.93 -0.41 0.44 16 26 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 27 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 28 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 29 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 32 H 0.09 1.27 7.94 -51.93 -0.41 0.86 16 33 H 0.05 0.96 7.79 -51.93 -0.40 0.55 16 34 H 0.03 0.60 7.62 -51.93 -0.40 0.21 16 35 H 0.36 8.76 5.84 -39.29 -0.23 8.53 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.14 3.44 5.71 -52.48 -0.30 3.14 16 38 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -25.71 328.66 -10.33 -36.04 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.69 Total: 12.06 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -3.43 Total: -30.76 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.14 Total: -37.85 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -25.71 -10.33 -36.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232961205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.003 kcal (2) G-P(sol) polarization free energy of solvation -25.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds