Wall clock time and date at job start Mon Mar 30 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 115.55149 * 2 1 4 4 C 1.52998 * 117.49435 * 214.29167 * 2 1 3 5 5 C 1.52993 * 60.00215 * 252.50925 * 4 2 1 6 6 H 1.08993 * 117.52088 * 252.52076 * 5 4 2 7 7 C 1.53007 * 117.49614 * 107.49044 * 5 4 2 8 8 N 1.46892 * 109.47145 * 116.38089 * 7 5 4 9 9 C 1.46899 * 111.00169 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.46914 * 34.99968 * 9 8 7 11 11 C 1.50699 * 109.47473 * 274.99866 * 9 8 7 12 12 H 1.07996 * 120.00190 * 116.47028 * 11 9 8 13 13 C 1.37875 * 119.99876 * 296.47879 * 11 9 8 14 14 N 1.31511 * 120.00228 * 9.44148 * 13 11 9 15 15 Si 1.86801 * 119.99820 * 189.44171 * 13 11 9 16 16 H 1.48498 * 109.47031 * 89.99941 * 15 13 11 17 17 H 1.48505 * 109.47036 * 209.99854 * 15 13 11 18 18 H 1.48495 * 109.47238 * 329.99642 * 15 13 11 19 19 C 1.50700 * 109.47057 * 154.99803 * 9 8 7 20 20 C 1.38230 * 120.00458 * 28.28321 * 19 9 8 21 21 C 1.38232 * 120.00401 * 179.80603 * 20 19 9 22 22 C 1.38240 * 120.00043 * 0.42356 * 21 20 19 23 23 C 1.38231 * 119.99787 * 359.80780 * 22 21 20 24 24 C 1.38237 * 119.99820 * 208.55601 * 19 9 8 25 25 H 1.09005 * 109.46750 * 274.32937 * 1 2 3 26 26 H 1.09002 * 109.47304 * 34.32545 * 1 2 3 27 27 H 1.08998 * 109.47907 * 154.33035 * 1 2 3 28 28 H 1.09000 * 109.46779 * 205.67224 * 3 2 1 29 29 H 1.08996 * 109.47140 * 325.67008 * 3 2 1 30 30 H 1.09004 * 109.47221 * 85.67444 * 3 2 1 31 31 H 1.09001 * 117.49656 * 145.01840 * 4 2 1 32 32 H 1.09003 * 117.49974 * 0.02562 * 4 2 1 33 33 H 1.08993 * 109.47212 * 356.37877 * 7 5 4 34 34 H 1.09001 * 109.46846 * 236.37713 * 7 5 4 35 35 H 1.00907 * 111.00411 * 56.04160 * 8 7 5 36 36 H 0.97004 * 120.00192 * 180.02562 * 14 13 11 37 37 H 1.08007 * 119.99717 * 359.97438 * 20 19 9 38 38 H 1.08008 * 120.00003 * 180.20574 * 21 20 19 39 39 H 1.07995 * 119.99912 * 179.78455 * 22 21 20 40 40 H 1.07997 * 119.99944 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00132 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2363 -1.1213 -0.7646 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8748 1.2688 7 6 1.3588 -2.1558 1.4721 8 7 2.2080 -3.0725 2.2442 9 6 1.3976 -4.0820 2.9385 10 1 0.5395 -4.3467 2.3208 11 6 0.9171 -3.5233 4.2530 12 1 -0.1400 -3.3882 4.4283 13 6 1.8270 -3.1845 5.2320 14 7 3.1132 -3.1715 4.9581 15 14 1.2327 -2.7440 6.9473 16 1 1.1694 -3.9721 7.7797 17 1 2.1749 -1.7759 7.5641 18 1 -0.1183 -2.1338 6.8616 19 6 2.2333 -5.3106 3.1903 20 6 3.6028 -5.1964 3.3395 21 6 4.3688 -6.3228 3.5744 22 6 3.7664 -7.5647 3.6515 23 6 2.3975 -7.6795 3.4977 24 6 1.6309 -6.5525 3.2666 25 1 -0.3633 0.0776 1.0248 26 1 -0.3634 0.8487 -0.5795 27 1 -0.3635 -0.9262 -0.4451 28 1 3.1822 1.3086 -0.4452 29 1 1.5810 2.0742 -0.5795 30 1 2.2767 1.7416 1.0248 31 1 3.1714 -0.8756 -1.2681 32 1 1.6110 -1.8587 -1.2680 33 1 0.7946 -2.7210 0.7304 34 1 0.6676 -1.6476 2.1445 35 1 2.7890 -2.5656 2.8951 36 1 3.7534 -2.9335 5.6469 37 1 4.0740 -4.2267 3.2751 38 1 5.4385 -6.2331 3.6942 39 1 4.3653 -8.4451 3.8316 40 1 1.9269 -8.6497 3.5575 41 1 0.5614 -6.6422 3.1461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232961205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:37 Heat of formation + Delta-G solvation = 28.929725 kcal Electronic energy + Delta-G solvation = -19448.232698 eV Core-core repulsion = 16713.695608 eV Total energy + Delta-G solvation = -2734.537090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01430 -39.45336 -36.85787 -33.86322 -32.02783 -31.29566 -30.02693 -28.60586 -28.22915 -25.97705 -24.06176 -22.89779 -21.78151 -21.51959 -19.51744 -18.44872 -17.44510 -16.88035 -16.09747 -15.81581 -15.60827 -15.35505 -15.10326 -14.69285 -14.22444 -14.10188 -13.87028 -13.66539 -13.38846 -13.28545 -13.05711 -12.92515 -12.80595 -12.70943 -12.55827 -12.27562 -12.14508 -11.83596 -11.73124 -11.36275 -11.27399 -10.72703 -10.63308 -10.28906 -9.42361 -9.10732 -8.79390 -7.97979 -6.29962 0.88812 1.03362 1.35469 1.39507 1.45421 2.38009 2.86414 3.09109 3.38963 3.67800 3.91124 4.03649 4.20403 4.30935 4.39330 4.41088 4.58816 4.61136 4.72140 4.79447 4.81196 4.88635 4.96986 4.99722 5.06350 5.08406 5.08754 5.14340 5.23032 5.23618 5.31540 5.42252 5.52016 5.54740 5.65309 5.69432 5.92562 6.08573 6.09860 6.37217 6.53260 6.62025 6.97620 7.18747 7.44184 8.82949 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.006740 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.502123 B = 4153.579113 C = 5155.904922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.157 4.157 5 C -0.151 4.151 6 H 0.087 0.913 7 C 0.109 3.891 8 N -0.687 5.687 9 C 0.239 3.761 10 H 0.023 0.977 11 C -0.565 4.565 12 H 0.041 0.959 13 C 0.044 3.956 14 N -0.876 5.876 15 Si 0.939 3.061 16 H -0.283 1.283 17 H -0.279 1.279 18 H -0.277 1.277 19 C -0.044 4.044 20 C -0.065 4.065 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.151 4.151 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.005 0.995 35 H 0.353 0.647 36 H 0.266 0.734 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 2.300 -7.488 7.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.128 4.128 3 C -0.167 4.167 4 C -0.194 4.194 5 C -0.169 4.169 6 H 0.105 0.895 7 C -0.021 4.021 8 N -0.321 5.321 9 C 0.130 3.870 10 H 0.041 0.959 11 C -0.604 4.604 12 H 0.059 0.941 13 C -0.159 4.159 14 N -0.513 5.513 15 Si 0.766 3.234 16 H -0.209 1.209 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.045 4.045 20 C -0.084 4.084 21 C -0.174 4.174 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.170 4.170 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.175 0.825 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.442 1.957 -7.946 8.196 hybrid contribution -0.781 0.662 2.082 2.320 sum -0.339 2.620 -5.865 6.432 Atomic orbital electron populations 1.21314 0.91915 1.02287 1.01404 1.21757 0.95238 0.91703 1.04058 1.21341 1.00286 0.93364 1.01745 1.23266 1.02307 1.00716 0.93121 1.22304 1.00481 0.99520 0.94612 0.89476 1.21151 0.93802 0.92139 0.95035 1.60936 1.23050 1.17214 1.30858 1.18005 0.89653 0.88377 0.90982 0.95927 1.21749 0.92863 1.43846 1.01910 0.94074 1.25440 0.95083 0.94463 1.00916 1.69784 1.01016 1.46429 1.34039 0.85868 0.78223 0.77788 0.81552 1.20909 1.20480 1.20187 1.20186 0.94648 0.94246 0.95445 1.21154 0.93720 0.98168 0.95388 1.21363 0.99869 0.93351 1.02846 1.21179 0.95023 0.97487 1.02898 1.21139 0.94377 0.98163 1.02382 1.21067 0.99384 0.93042 1.03473 0.93502 0.90425 0.92793 0.91992 0.90585 0.92999 0.88061 0.89063 0.93177 0.97672 0.82526 0.92410 0.85976 0.86093 0.84644 0.84754 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.87 8.86 71.98 0.64 -2.23 16 2 C -0.13 -3.47 2.70 -52.18 -0.14 -3.61 16 3 C -0.11 -2.50 9.85 71.98 0.71 -1.79 16 4 C -0.16 -4.38 9.47 30.59 0.29 -4.09 16 5 C -0.15 -5.17 5.67 -10.79 -0.06 -5.23 16 6 H 0.09 3.21 8.13 -2.39 -0.02 3.19 16 7 C 0.11 4.46 4.84 86.31 0.42 4.87 16 8 N -0.69 -32.30 5.35 -499.37 -2.67 -34.98 16 9 C 0.24 11.97 2.50 43.42 0.11 12.08 16 10 H 0.02 1.13 7.75 -2.39 -0.02 1.12 16 11 C -0.56 -30.39 8.61 25.60 0.22 -30.17 16 12 H 0.04 2.26 7.83 -2.91 -0.02 2.24 16 13 C 0.04 2.32 5.04 84.65 0.43 2.75 16 14 N -0.88 -45.55 8.09 21.45 0.17 -45.38 16 15 Si 0.94 42.77 29.55 68.60 2.03 44.79 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 C -0.04 -2.14 4.66 -19.87 -0.09 -2.23 16 20 C -0.07 -3.08 7.48 22.27 0.17 -2.91 16 21 C -0.16 -6.34 10.05 22.27 0.22 -6.11 16 22 C -0.15 -5.39 10.05 22.27 0.22 -5.16 16 23 C -0.14 -5.34 10.05 22.27 0.22 -5.12 16 24 C -0.15 -6.58 9.71 22.27 0.22 -6.37 16 25 H 0.05 1.32 7.83 -2.38 -0.02 1.30 16 26 H 0.08 1.58 7.92 -2.39 -0.02 1.57 16 27 H 0.05 1.38 7.90 -2.39 -0.02 1.36 16 28 H 0.06 1.30 7.90 -2.39 -0.02 1.28 16 29 H 0.08 1.41 7.92 -2.39 -0.02 1.39 16 30 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.10 2.50 8.05 -2.39 -0.02 2.48 16 32 H 0.09 2.51 7.94 -2.39 -0.02 2.49 16 33 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 34 H 0.01 0.23 7.62 -2.39 -0.02 0.21 16 35 H 0.35 17.83 5.84 -89.69 -0.52 17.31 16 36 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 37 H 0.12 6.15 5.71 -2.91 -0.02 6.13 16 38 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 41 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -55.80 328.66 3.56 -52.24 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.47 Total: 38.65 kcal Atomic # 6 Polarization: -58.90 SS G_CDS: 3.57 Total: -55.33 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.50 Total: -80.36 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -55.80 3.56 -52.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232961205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.169 kcal (2) G-P(sol) polarization free energy of solvation -55.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds